Wall clock time and date at job start Sat Apr 11 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00268 * 2 1 4 4 C 1.52995 * 109.47066 * 119.99880 * 3 2 1 5 5 C 1.52995 * 109.47502 * 240.00409 * 3 2 1 6 6 C 1.53008 * 109.46979 * 299.99641 * 5 3 2 7 7 C 1.50708 * 109.46794 * 0.02562 * 3 2 1 8 8 O 1.21282 * 119.99884 * 240.00054 * 7 3 2 9 9 N 1.34772 * 120.00084 * 60.00015 * 7 3 2 10 10 C 1.46501 * 120.00051 * 180.02562 * 9 7 3 11 11 C 1.53002 * 109.47270 * 176.33861 * 10 9 7 12 12 H 1.08998 * 112.96259 * 309.32826 * 11 10 9 13 13 C 1.53943 * 113.76728 * 177.64402 * 11 10 9 14 14 C 1.53948 * 86.29103 * 222.08976 * 13 11 10 15 15 N 1.47577 * 113.76975 * 81.00081 * 11 10 9 16 16 C 1.34782 * 134.49346 * 318.93807 * 15 11 10 17 17 O 1.21283 * 119.99821 * 4.81260 * 16 15 11 18 18 C 1.50698 * 119.99611 * 184.81918 * 16 15 11 19 19 S 1.81009 * 109.46829 * 179.97438 * 18 16 15 20 20 C 1.76195 * 99.99878 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00646 * 0.02562 * 20 19 18 22 22 C 1.38809 * 119.99788 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99891 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99789 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47072 * 60.00177 * 24 22 20 26 26 H 1.48498 * 109.46809 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47070 * 299.99912 * 24 22 20 28 28 H 1.07999 * 119.99617 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99733 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.00140 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47726 * 300.00315 * 4 3 2 32 32 H 1.08998 * 109.47180 * 60.00469 * 4 3 2 33 33 H 1.09005 * 109.47080 * 180.02562 * 4 3 2 34 34 H 1.08994 * 109.47151 * 59.99603 * 5 3 2 35 35 H 1.09005 * 109.47285 * 179.97438 * 5 3 2 36 36 H 1.08995 * 109.46930 * 300.00471 * 6 5 3 37 37 H 1.08999 * 109.46516 * 60.00125 * 6 5 3 38 38 H 1.08991 * 109.47097 * 179.97438 * 6 5 3 39 39 H 0.97003 * 119.99765 * 359.97438 * 9 7 3 40 40 H 1.09009 * 109.46674 * 296.33668 * 10 9 7 41 41 H 1.08999 * 109.47193 * 56.33901 * 10 9 7 42 42 H 1.08993 * 113.74763 * 336.43910 * 13 11 10 43 43 H 1.09005 * 113.73712 * 107.74934 * 13 11 10 44 44 H 1.09000 * 113.76872 * 137.90521 * 14 13 11 45 45 H 1.09000 * 113.77103 * 269.19999 * 14 13 11 46 46 H 1.09000 * 109.47338 * 299.99222 * 18 16 15 47 47 H 1.08994 * 109.47329 * 60.00063 * 18 16 15 48 48 H 0.97001 * 120.00062 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9432 1.3861 1.2492 5 6 2.9431 1.3862 -1.2492 6 6 3.9375 0.2232 -1.2493 7 6 1.0842 2.4506 0.0006 8 8 1.0890 3.2529 -0.9088 9 7 0.2032 2.5833 1.0118 10 6 -0.7492 3.6965 1.0121 11 6 -1.6878 3.5644 2.2132 12 1 -2.1393 2.5755 2.2933 13 6 -2.6971 4.7196 2.3419 14 6 -2.3959 4.6819 3.8511 15 7 -1.1089 4.0581 3.4777 16 6 0.1051 3.9741 4.0570 17 8 1.0263 3.4559 3.4623 18 6 0.3177 4.5241 5.4439 19 16 2.0386 4.2613 5.9398 20 6 2.0061 4.9782 7.5490 21 1 1.0902 5.4026 7.9328 22 6 3.1577 4.9967 8.3239 23 7 4.2739 4.4790 7.8564 24 14 3.1234 5.7574 10.0296 25 1 2.1351 5.0380 10.8728 26 1 4.4704 5.6519 10.6458 27 1 2.7377 7.1877 9.9261 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 2.3165 1.3283 2.1393 32 1 3.6515 0.5576 1.2492 33 1 3.4879 2.3302 1.2494 34 1 2.3165 1.3285 -2.1391 35 1 3.4878 2.3304 -1.2494 36 1 4.5640 0.2810 -0.3593 37 1 3.3924 -0.7207 -1.2493 38 1 4.5637 0.2808 -2.1394 39 1 0.1991 1.9413 1.7390 40 1 -0.2060 4.6393 1.0775 41 1 -1.3323 3.6761 0.0914 42 1 -2.3761 5.6394 1.8532 43 1 -3.7201 4.4385 2.0915 44 1 -2.2925 5.6683 4.3033 45 1 -3.0563 4.0228 4.4146 46 1 0.0967 5.5914 5.4494 47 1 -0.3436 4.0124 6.1430 48 1 5.0785 4.4916 8.3980 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738711397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:16 Heat of formation + Delta-G solvation = -20.492608 kcal Electronic energy + Delta-G solvation = -28110.036377 eV Core-core repulsion = 24293.105268 eV Total energy + Delta-G solvation = -3816.931108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.70795 -39.95783 -37.44315 -36.47673 -34.70039 -32.45811 -32.13378 -30.77110 -29.62598 -28.20592 -28.11241 -25.50201 -25.27328 -23.57512 -22.03311 -21.89166 -21.13664 -19.35702 -18.53084 -17.68327 -16.75752 -16.65280 -16.42443 -15.76499 -15.56543 -15.45930 -14.83082 -14.58769 -14.38771 -14.22991 -13.99006 -13.78855 -13.52224 -13.20294 -12.86205 -12.60596 -12.49396 -12.43518 -12.20998 -12.15262 -12.00645 -11.91545 -11.66047 -11.61005 -11.53821 -11.20738 -11.06404 -11.05964 -10.82624 -10.79109 -10.49645 -9.85538 -9.58289 -9.51273 -9.31854 -9.08682 -8.85965 -8.64672 -8.27724 -6.52930 -6.24491 -3.95069 2.11485 2.62874 2.78248 3.01769 3.19664 3.21102 3.26001 3.28234 3.53360 4.16273 4.17960 4.56310 4.60494 4.63258 4.66930 4.78898 4.91701 5.03145 5.06675 5.10717 5.12122 5.19659 5.28160 5.34454 5.35306 5.48353 5.48812 5.55786 5.64891 5.69582 5.70740 5.82021 5.87207 5.94697 5.98289 6.03910 6.08627 6.10337 6.13228 6.26019 6.40175 6.48853 6.52824 6.56860 7.56331 7.61359 7.78265 8.31956 8.33691 8.52418 9.20852 10.82802 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011337 B = 0.003201 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.115716 B = 8745.657804 C =10665.492697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.135 4.135 3 C -0.051 4.051 4 C -0.137 4.137 5 C -0.095 4.095 6 C -0.155 4.155 7 C 0.532 3.468 8 O -0.549 6.549 9 N -0.709 5.709 10 C 0.121 3.879 11 C 0.121 3.879 12 H 0.096 0.904 13 C -0.142 4.142 14 C 0.103 3.897 15 N -0.649 5.649 16 C 0.554 3.446 17 O -0.505 6.505 18 C -0.146 4.146 19 S -0.057 6.057 20 C -0.537 4.537 21 H 0.071 0.929 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.407 0.593 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.607 -6.689 -14.621 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.153 4.153 3 C -0.054 4.054 4 C -0.195 4.195 5 C -0.132 4.132 6 C -0.212 4.212 7 C 0.318 3.682 8 O -0.427 6.427 9 N -0.361 5.361 10 C -0.004 4.004 11 C 0.017 3.983 12 H 0.114 0.886 13 C -0.180 4.180 14 C -0.020 4.020 15 N -0.389 5.389 16 C 0.343 3.657 17 O -0.379 6.379 18 C -0.296 4.296 19 S 0.170 5.830 20 C -0.685 4.685 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.243 0.757 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.811 -6.919 -15.999 21.055 hybrid contribution -1.161 0.799 2.404 2.787 sum -12.972 -6.120 -13.595 19.762 Atomic orbital electron populations 1.24271 0.96247 1.02780 1.01246 1.22780 0.95707 0.97166 0.99688 1.20012 0.95125 0.91369 0.98897 1.21854 0.99477 1.02957 0.95170 1.21308 0.96858 0.99451 0.95625 1.21898 0.99096 0.98169 1.02033 1.20337 0.80467 0.86013 0.81381 1.90660 1.70888 1.44461 1.36652 1.45994 1.35396 1.29592 1.25151 1.21457 0.90711 0.91319 0.96899 1.23024 0.91980 0.98765 0.84555 0.88614 1.23538 0.99198 0.98915 0.96395 1.23120 0.83633 0.98872 0.96415 1.50324 1.09640 1.57280 1.21675 1.20056 0.80341 0.78378 0.86901 1.90690 1.39869 1.43537 1.63774 1.23480 1.07798 1.03485 0.94855 1.85334 1.00551 1.78448 1.18713 1.22820 0.99281 1.45010 1.01421 0.91076 1.24978 0.94529 0.95146 0.98806 1.69999 1.00442 1.42363 1.37432 0.86239 0.77491 0.79571 0.82297 1.19939 1.20771 1.19936 0.88164 0.87523 0.86196 0.91070 0.91362 0.91555 0.91532 0.91038 0.92021 0.92635 0.92655 0.75686 0.91012 0.90437 0.88562 0.89462 0.89787 0.89751 0.89628 0.89544 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.06 13.17 29.01 0.38 -1.68 16 2 C -0.14 -1.42 8.00 -36.03 -0.29 -1.71 16 3 C -0.05 -0.65 0.62 -156.81 -0.10 -0.74 16 4 C -0.14 -1.87 8.00 37.15 0.30 -1.57 16 5 C -0.09 -1.14 4.27 -26.73 -0.11 -1.25 16 6 C -0.15 -1.47 9.30 37.16 0.35 -1.13 16 7 C 0.53 7.96 5.34 -10.98 -0.06 7.90 16 8 O -0.55 -9.86 15.98 5.56 0.09 -9.77 16 9 N -0.71 -9.50 2.57 -60.29 -0.15 -9.65 16 10 C 0.12 1.44 5.21 -4.04 -0.02 1.42 16 11 C 0.12 1.17 4.28 -66.87 -0.29 0.88 16 12 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 13 C -0.14 -0.97 7.86 -25.79 -0.20 -1.18 16 14 C 0.10 0.88 8.63 -2.84 -0.02 0.86 16 15 N -0.65 -8.29 3.50 -170.18 -0.60 -8.89 16 16 C 0.55 9.89 7.99 -10.98 -0.09 9.81 16 17 O -0.51 -10.37 14.19 5.55 0.08 -10.29 16 18 C -0.15 -2.90 5.92 36.00 0.21 -2.69 16 19 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 20 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 21 H 0.07 1.90 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -25.90 13.22 55.49 0.73 -25.16 16 24 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.10 0.81 8.06 -52.49 -0.42 0.38 16 29 H 0.11 1.14 5.18 -52.49 -0.27 0.87 16 30 H 0.12 1.07 7.00 -52.49 -0.37 0.70 16 31 H 0.07 1.08 7.56 -51.93 -0.39 0.68 16 32 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 37 H 0.05 0.47 6.62 -51.93 -0.34 0.13 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.41 5.44 6.48 -40.82 -0.26 5.18 16 40 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 47 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 400.08 15.07 6.03 6.03 Total: -1.00 -34.86 400.08 -8.56 -43.42 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.76 Total: 5.75 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 0.26 Total: -3.93 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.02 Total: -43.70 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.17 Total: -20.06 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.86 -8.56 -43.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738711397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.928 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds