Wall clock time and date at job start Sat Apr 11 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47134 * 2 1 4 4 C 1.52992 * 109.47190 * 184.76018 * 3 2 1 5 5 C 1.50703 * 115.55145 * 301.53588 * 4 3 2 6 6 O 1.21277 * 120.00109 * 99.44253 * 5 4 3 7 7 N 1.34786 * 119.99827 * 279.44808 * 5 4 3 8 8 C 1.46497 * 119.99614 * 174.41256 * 7 5 4 9 9 C 1.53000 * 115.56397 * 319.44557 * 8 7 5 10 10 N 1.46491 * 109.47285 * 279.99307 * 9 8 7 11 11 C 1.34777 * 120.00017 * 184.99640 * 10 9 8 12 12 O 1.21277 * 119.99912 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00245 * 180.02562 * 11 10 9 14 14 S 1.81002 * 109.47383 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99971 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99848 * 359.97438 * 15 14 13 17 17 C 1.38796 * 119.99754 * 179.97438 * 15 14 13 18 18 N 1.31634 * 120.00114 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47343 * 119.99953 * 19 17 15 22 22 H 1.48496 * 109.47448 * 240.00226 * 19 17 15 23 23 C 1.53001 * 117.49291 * 173.76133 * 8 7 5 24 24 C 1.52999 * 117.49800 * 105.14074 * 8 7 5 25 25 C 1.53001 * 117.51945 * 87.23659 * 4 3 2 26 26 C 1.52997 * 60.00237 * 107.48204 * 25 4 3 27 27 H 1.08997 * 109.47168 * 299.99874 * 1 2 3 28 28 H 1.09006 * 109.46953 * 60.00101 * 1 2 3 29 29 H 1.08994 * 109.47259 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47168 * 240.00126 * 2 1 3 31 31 H 1.08999 * 109.47124 * 119.99560 * 2 1 3 32 32 H 1.09006 * 109.47147 * 64.75846 * 3 2 1 33 33 H 1.08996 * 109.47116 * 304.75995 * 3 2 1 34 34 H 0.96996 * 119.99432 * 354.40703 * 7 5 4 35 35 H 1.08999 * 109.46916 * 39.99546 * 9 8 7 36 36 H 1.09000 * 109.47177 * 159.99040 * 9 8 7 37 37 H 0.97002 * 120.00593 * 5.00256 * 10 9 8 38 38 H 1.09008 * 109.47103 * 299.99906 * 13 11 10 39 39 H 1.09003 * 109.47535 * 59.99651 * 13 11 10 40 40 H 0.97004 * 119.99717 * 179.97438 * 18 17 15 41 41 H 1.09004 * 117.49991 * 145.01927 * 23 8 7 42 42 H 1.08996 * 117.50286 * 359.97438 * 23 8 7 43 43 H 1.08998 * 117.50465 * 359.97438 * 24 8 7 44 44 H 1.08997 * 117.51882 * 214.96679 * 24 8 7 45 45 H 1.09007 * 117.49623 * 214.97018 * 25 4 3 46 46 H 1.08997 * 117.49996 * 359.97438 * 25 4 3 47 47 H 1.08998 * 117.50092 * 252.51624 * 26 25 4 48 48 H 1.08996 * 117.50143 * 107.48673 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4442 -0.1197 5 6 4.3031 0.7020 0.9646 6 8 4.7068 -0.4236 0.7623 7 7 4.5144 1.2891 2.1593 8 6 5.1219 0.5267 3.2529 9 6 4.6420 -0.9190 3.3960 10 7 3.3527 -0.9390 4.0910 11 6 2.7828 -2.1152 4.4202 12 8 3.3376 -3.1569 4.1415 13 6 1.4561 -2.1359 5.1347 14 16 0.9594 -3.8502 5.4356 15 6 -0.5762 -3.5841 6.2578 16 1 -0.9297 -2.5780 6.4291 17 6 -1.3314 -4.6673 6.6851 18 7 -0.9007 -5.8935 6.4758 19 14 -2.9596 -4.3853 7.5561 20 1 -3.2163 -2.9267 7.6654 21 1 -4.0532 -5.0230 6.7798 22 1 -2.9041 -4.9818 8.9148 23 6 5.4700 1.2857 4.5349 24 6 6.5838 0.8229 3.5936 25 6 4.1639 1.4171 -1.5275 26 6 4.2275 2.6984 -0.6938 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7479 1.9312 0.9296 33 1 1.6087 1.9804 -0.8442 34 1 4.2643 2.2164 2.2949 35 1 4.5289 -1.3638 2.4073 36 1 5.3728 -1.4893 3.9694 37 1 2.9089 -0.1059 4.3142 38 1 1.5476 -1.6121 6.0863 39 1 0.7041 -1.6421 4.5191 40 1 -1.4283 -6.6505 6.7748 41 1 5.3571 0.7551 5.4804 42 1 5.2474 2.3523 4.5646 43 1 7.0937 1.5846 3.0039 44 1 7.2040 -0.0120 3.9199 45 1 5.0915 0.8624 -1.6693 46 1 3.4711 1.3976 -2.3687 47 1 3.5764 3.5221 -0.9864 48 1 5.1968 2.9866 -0.2871 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738730308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:25 Heat of formation + Delta-G solvation = -34.024417 kcal Electronic energy + Delta-G solvation = -27670.422814 eV Core-core repulsion = 23852.904922 eV Total energy + Delta-G solvation = -3817.517892 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81111 -39.20501 -38.16954 -36.86192 -34.05468 -33.85175 -33.01356 -32.40287 -29.68661 -27.80468 -26.45143 -25.40262 -24.24248 -22.94916 -22.88943 -21.73086 -20.50054 -20.19529 -19.69970 -17.84959 -17.30278 -16.79819 -16.19597 -15.82166 -15.74278 -15.36161 -14.94485 -14.78527 -14.70838 -14.65430 -13.97504 -13.87077 -13.58100 -13.31981 -13.06016 -12.94576 -12.63277 -12.48213 -12.45761 -12.02838 -11.95741 -11.92024 -11.69252 -11.42319 -11.38305 -11.05675 -10.99372 -10.94738 -10.89272 -10.74027 -10.64578 -10.29744 -9.80642 -9.77994 -9.42562 -9.10218 -9.05200 -8.65224 -8.18683 -6.46256 -6.19173 -3.89160 2.30284 2.63385 2.99652 3.19686 3.22893 3.23534 3.26729 3.31857 3.48039 3.86524 4.14610 4.22543 4.24332 4.29969 4.42897 4.46680 4.60913 4.64046 4.96631 5.01253 5.12122 5.15840 5.16320 5.20048 5.23950 5.30751 5.46236 5.48713 5.51651 5.55475 5.57104 5.59115 5.69732 5.71355 5.72606 5.73775 5.92937 6.05169 6.05810 6.11825 6.17091 6.24733 6.32384 6.69487 7.19728 7.62027 7.79581 7.98926 8.37787 8.71060 9.26067 10.88277 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.002811 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.587484 B = 9957.797843 C =11309.310879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.072 4.072 4 C -0.155 4.155 5 C 0.556 3.444 6 O -0.514 6.514 7 N -0.696 5.696 8 C 0.091 3.909 9 C 0.137 3.863 10 N -0.734 5.734 11 C 0.531 3.469 12 O -0.516 6.516 13 C -0.151 4.151 14 S -0.059 6.059 15 C -0.534 4.534 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.169 4.169 24 C -0.171 4.171 25 C -0.143 4.143 26 C -0.166 4.166 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.402 0.598 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.395 0.605 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.267 0.733 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.991 23.778 -12.205 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.110 4.110 4 C -0.158 4.158 5 C 0.342 3.658 6 O -0.389 6.389 7 N -0.347 5.347 8 C 0.004 3.996 9 C 0.013 3.987 10 N -0.389 5.389 11 C 0.316 3.684 12 O -0.390 6.390 13 C -0.302 4.302 14 S 0.167 5.833 15 C -0.682 4.682 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.207 4.207 24 C -0.211 4.211 25 C -0.180 4.180 26 C -0.204 4.204 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.228 0.772 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.159 20.987 -12.814 27.432 hybrid contribution -1.982 2.364 1.137 3.288 sum 10.177 23.352 -11.677 28.022 Atomic orbital electron populations 1.21757 0.95395 1.02346 1.01398 1.21486 0.95964 0.95663 1.03041 1.21111 0.89012 0.98228 1.02602 1.21513 0.96287 1.02573 0.95411 1.19525 0.78292 0.86132 0.81868 1.90668 1.49546 1.18625 1.80033 1.45289 1.63698 1.15009 1.10709 1.20896 0.96463 0.93058 0.89218 1.21253 0.85592 0.91525 1.00329 1.45938 1.22513 1.08636 1.61772 1.20267 0.86481 0.83098 0.78506 1.90710 1.63718 1.31832 1.52746 1.23516 0.96102 1.08394 1.02202 1.85435 1.25110 0.97046 1.75685 1.22907 1.06372 0.95484 1.43474 0.90951 1.24993 0.98454 0.94448 0.95742 1.70035 1.38028 0.97923 1.44272 0.86124 0.81977 0.78382 0.79044 1.19647 1.20584 1.20586 1.23368 1.02431 1.00653 0.94222 1.23456 0.91314 1.03923 1.02378 1.22995 1.03030 0.99596 0.92398 1.23128 1.02121 0.91555 1.03556 0.92715 0.93011 0.92176 0.91604 0.91703 0.91235 0.90839 0.76254 0.87558 0.90629 0.77229 0.89384 0.89436 0.92264 0.87133 0.88071 0.88240 0.87623 0.88072 0.87748 0.87807 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.33 5.65 -26.73 -0.15 -1.48 16 3 C -0.07 -0.57 5.13 -26.73 -0.14 -0.70 16 4 C -0.15 -1.26 1.95 -155.66 -0.30 -1.56 16 5 C 0.56 6.01 5.95 -10.98 -0.07 5.94 16 6 O -0.51 -7.83 14.39 5.56 0.08 -7.75 16 7 N -0.70 -5.75 5.57 -47.61 -0.27 -6.02 16 8 C 0.09 0.86 2.23 -131.82 -0.29 0.57 16 9 C 0.14 1.89 5.41 -4.05 -0.02 1.87 16 10 N -0.73 -10.55 5.52 -60.30 -0.33 -10.88 16 11 C 0.53 10.43 7.85 -10.99 -0.09 10.35 16 12 O -0.52 -12.43 15.86 5.56 0.09 -12.34 16 13 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 15 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 16 H 0.07 1.97 7.80 -52.48 -0.41 1.57 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 19 Si 0.92 21.57 29.55 -169.99 -5.02 16.54 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.17 -1.17 10.11 -26.73 -0.27 -1.44 16 24 C -0.17 -1.35 10.10 -26.73 -0.27 -1.62 16 25 C -0.14 -1.07 9.86 -26.73 -0.26 -1.33 16 26 C -0.17 -0.94 9.95 -26.73 -0.27 -1.20 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.88 7.69 -51.93 -0.40 0.48 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.48 8.11 -51.93 -0.42 0.05 16 34 H 0.40 2.18 8.78 -40.82 -0.36 1.82 16 35 H 0.11 1.82 5.23 -51.93 -0.27 1.55 16 36 H 0.08 1.10 7.94 -51.93 -0.41 0.68 16 37 H 0.39 4.51 8.48 -40.82 -0.35 4.17 16 38 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.11 0.85 8.09 -51.93 -0.42 0.43 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 415.67 15.07 6.26 6.26 Total: -1.00 -36.57 415.67 -10.10 -46.67 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.09 Total: 4.88 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.34 Total: -7.79 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.14 Total: -42.61 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.17 Total: -20.09 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.57 -10.10 -46.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738730308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.641 kcal (2) G-P(sol) polarization free energy of solvation -36.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds