Wall clock time and date at job start Sat Apr 11 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47134 * 2 1 4 4 C 1.52992 * 109.47190 * 184.76018 * 3 2 1 5 5 C 1.50703 * 115.55145 * 301.53588 * 4 3 2 6 6 O 1.21277 * 120.00109 * 99.44253 * 5 4 3 7 7 N 1.34786 * 119.99827 * 279.44808 * 5 4 3 8 8 C 1.46497 * 119.99614 * 174.41256 * 7 5 4 9 9 C 1.53000 * 115.56397 * 319.44557 * 8 7 5 10 10 N 1.46491 * 109.47285 * 279.99307 * 9 8 7 11 11 C 1.34777 * 120.00017 * 184.99640 * 10 9 8 12 12 O 1.21277 * 119.99912 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00245 * 180.02562 * 11 10 9 14 14 S 1.81002 * 109.47383 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99971 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99848 * 359.97438 * 15 14 13 17 17 C 1.38796 * 119.99754 * 179.97438 * 15 14 13 18 18 N 1.31634 * 120.00114 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47343 * 119.99953 * 19 17 15 22 22 H 1.48496 * 109.47448 * 240.00226 * 19 17 15 23 23 C 1.53001 * 117.49291 * 173.76133 * 8 7 5 24 24 C 1.52999 * 117.49800 * 105.14074 * 8 7 5 25 25 C 1.53001 * 117.51945 * 87.23659 * 4 3 2 26 26 C 1.52997 * 60.00237 * 107.48204 * 25 4 3 27 27 H 1.08997 * 109.47168 * 299.99874 * 1 2 3 28 28 H 1.09006 * 109.46953 * 60.00101 * 1 2 3 29 29 H 1.08994 * 109.47259 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47168 * 240.00126 * 2 1 3 31 31 H 1.08999 * 109.47124 * 119.99560 * 2 1 3 32 32 H 1.09006 * 109.47147 * 64.75846 * 3 2 1 33 33 H 1.08996 * 109.47116 * 304.75995 * 3 2 1 34 34 H 0.96996 * 119.99432 * 354.40703 * 7 5 4 35 35 H 1.08999 * 109.46916 * 39.99546 * 9 8 7 36 36 H 1.09000 * 109.47177 * 159.99040 * 9 8 7 37 37 H 0.97002 * 120.00593 * 5.00256 * 10 9 8 38 38 H 1.09008 * 109.47103 * 299.99906 * 13 11 10 39 39 H 1.09003 * 109.47535 * 59.99651 * 13 11 10 40 40 H 0.97004 * 119.99717 * 179.97438 * 18 17 15 41 41 H 1.09004 * 117.49991 * 145.01927 * 23 8 7 42 42 H 1.08996 * 117.50286 * 359.97438 * 23 8 7 43 43 H 1.08998 * 117.50465 * 359.97438 * 24 8 7 44 44 H 1.08997 * 117.51882 * 214.96679 * 24 8 7 45 45 H 1.09007 * 117.49623 * 214.97018 * 25 4 3 46 46 H 1.08997 * 117.49996 * 359.97438 * 25 4 3 47 47 H 1.08998 * 117.50092 * 252.51624 * 26 25 4 48 48 H 1.08996 * 117.50143 * 107.48673 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4442 -0.1197 5 6 4.3031 0.7020 0.9646 6 8 4.7068 -0.4236 0.7623 7 7 4.5144 1.2891 2.1593 8 6 5.1219 0.5267 3.2529 9 6 4.6420 -0.9190 3.3960 10 7 3.3527 -0.9390 4.0910 11 6 2.7828 -2.1152 4.4202 12 8 3.3376 -3.1569 4.1415 13 6 1.4561 -2.1359 5.1347 14 16 0.9594 -3.8502 5.4356 15 6 -0.5762 -3.5841 6.2578 16 1 -0.9297 -2.5780 6.4291 17 6 -1.3314 -4.6673 6.6851 18 7 -0.9007 -5.8935 6.4758 19 14 -2.9596 -4.3853 7.5561 20 1 -3.2163 -2.9267 7.6654 21 1 -4.0532 -5.0230 6.7798 22 1 -2.9041 -4.9818 8.9148 23 6 5.4700 1.2857 4.5349 24 6 6.5838 0.8229 3.5936 25 6 4.1639 1.4171 -1.5275 26 6 4.2275 2.6984 -0.6938 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7479 1.9312 0.9296 33 1 1.6087 1.9804 -0.8442 34 1 4.2643 2.2164 2.2949 35 1 4.5289 -1.3638 2.4073 36 1 5.3728 -1.4893 3.9694 37 1 2.9089 -0.1059 4.3142 38 1 1.5476 -1.6121 6.0863 39 1 0.7041 -1.6421 4.5191 40 1 -1.4283 -6.6505 6.7748 41 1 5.3571 0.7551 5.4804 42 1 5.2474 2.3523 4.5646 43 1 7.0937 1.5846 3.0039 44 1 7.2040 -0.0120 3.9199 45 1 5.0915 0.8624 -1.6693 46 1 3.4711 1.3976 -2.3687 47 1 3.5764 3.5221 -0.9864 48 1 5.1968 2.9866 -0.2871 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738730308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:24 Heat of formation + Delta-G solvation = -60.026074 kcal Electronic energy + Delta-G solvation = -27671.550330 eV Core-core repulsion = 23852.904922 eV Total energy + Delta-G solvation = -3818.645408 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.63833 -40.54953 -39.08792 -37.66908 -35.27922 -34.78563 -34.58896 -33.78327 -31.29842 -28.49399 -27.91296 -27.36699 -25.02915 -23.53175 -23.47625 -22.50000 -21.75152 -21.28541 -20.50185 -19.82207 -18.05440 -17.95089 -17.65832 -16.89767 -16.86431 -16.50735 -16.43505 -16.23080 -15.76189 -15.52941 -15.48531 -14.78862 -14.69431 -14.45226 -14.34479 -14.19110 -13.99484 -13.42159 -13.33752 -13.16877 -13.13229 -12.91557 -12.75382 -12.60715 -12.48870 -12.44422 -12.21971 -12.11853 -11.76442 -11.71977 -11.65423 -11.30121 -11.16498 -11.04408 -10.91026 -10.69416 -10.28256 -10.02937 -9.87990 -8.68482 -8.35078 -6.13887 1.24873 1.41410 1.45653 1.51055 1.57183 1.58672 1.94703 2.14783 2.26609 2.67714 2.85884 2.99089 3.31545 3.42917 3.56426 3.65926 3.74300 3.86306 3.89752 3.97490 4.03151 4.15797 4.25730 4.30031 4.44387 4.45694 4.50487 4.57426 4.71617 4.73587 4.80518 4.82588 4.89559 4.92252 4.95312 4.96835 4.99901 5.16273 5.20865 5.25119 5.28168 5.35090 5.39855 5.41275 5.50124 6.19542 6.45844 6.53752 7.05871 7.20846 7.25732 8.74559 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012663 B = 0.002811 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.587484 B = 9957.797843 C =11309.310879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.063 4.063 4 C -0.169 4.169 5 C 0.549 3.451 6 O -0.570 6.570 7 N -0.677 5.677 8 C 0.071 3.929 9 C 0.139 3.861 10 N -0.703 5.703 11 C 0.531 3.469 12 O -0.569 6.569 13 C -0.125 4.125 14 S -0.154 6.154 15 C -0.543 4.543 16 H 0.084 0.916 17 C 0.011 3.989 18 N -0.913 5.913 19 Si 1.001 2.999 20 H -0.255 1.255 21 H -0.275 1.275 22 H -0.273 1.273 23 C -0.140 4.140 24 C -0.168 4.168 25 C -0.159 4.159 26 C -0.131 4.131 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.026 0.974 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.421 0.579 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.413 0.587 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.271 0.729 41 H 0.107 0.893 42 H 0.135 0.865 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.115 0.885 47 H 0.131 0.869 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.998 28.745 -11.639 32.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.101 4.101 4 C -0.172 4.172 5 C 0.337 3.663 6 O -0.448 6.448 7 N -0.329 5.329 8 C -0.017 4.017 9 C 0.015 3.985 10 N -0.357 5.357 11 C 0.316 3.684 12 O -0.448 6.448 13 C -0.276 4.276 14 S 0.073 5.927 15 C -0.691 4.691 16 H 0.102 0.898 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.823 3.177 20 H -0.178 1.178 21 H -0.200 1.200 22 H -0.199 1.199 23 C -0.177 4.177 24 C -0.207 4.207 25 C -0.197 4.197 26 C -0.168 4.168 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.259 0.741 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.250 0.750 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.153 0.847 43 H 0.135 0.865 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.133 0.867 47 H 0.149 0.851 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.172 26.066 -12.235 30.886 hybrid contribution -1.553 0.846 0.895 1.982 sum 9.618 26.912 -11.340 30.747 Atomic orbital electron populations 1.21744 0.94778 1.01392 1.02732 1.21433 0.96468 0.97632 1.00468 1.21080 0.88683 0.95983 1.04334 1.21462 0.96249 1.04700 0.94776 1.20094 0.77753 0.85590 0.82897 1.90657 1.51947 1.21144 1.81097 1.45117 1.62703 1.15562 1.09535 1.20639 0.98233 0.91249 0.91604 1.21143 0.84557 0.94856 0.97950 1.45634 1.22460 1.07767 1.59843 1.20158 0.86129 0.83759 0.78304 1.90696 1.64939 1.34010 1.55108 1.23331 0.96966 1.03324 1.03968 1.85677 1.26437 1.04239 1.76353 1.23223 1.06231 0.96219 1.43442 0.89789 1.26172 1.02845 0.93927 0.96375 1.70206 1.39969 0.99145 1.45592 0.84871 0.76147 0.79177 0.77526 1.17812 1.20001 1.19874 1.23490 0.99836 1.01969 0.92414 1.23538 0.90434 1.04104 1.02654 1.23050 1.02555 1.01389 0.92657 1.23246 1.02389 0.90744 1.00405 0.92169 0.90777 0.94331 0.93079 0.95507 0.89914 0.88405 0.74062 0.90996 0.91883 0.75004 0.86838 0.87559 0.92011 0.87440 0.84746 0.86544 0.88435 0.90081 0.86660 0.85124 0.87680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.91 71.98 0.71 -2.22 16 2 C -0.12 -2.67 5.65 30.59 0.17 -2.50 16 3 C -0.06 -0.86 5.13 30.59 0.16 -0.71 16 4 C -0.17 -2.49 1.95 -52.93 -0.10 -2.59 16 5 C 0.55 11.73 5.95 87.66 0.52 12.25 16 6 O -0.57 -18.53 14.39 -3.02 -0.04 -18.57 16 7 N -0.68 -9.90 5.57 -422.92 -2.36 -12.26 16 8 C 0.07 1.24 2.23 3.60 0.01 1.25 16 9 C 0.14 3.96 5.41 86.38 0.47 4.43 16 10 N -0.70 -20.12 5.52 -463.09 -2.56 -22.68 16 11 C 0.53 21.39 7.85 87.66 0.69 22.08 16 12 O -0.57 -29.05 15.86 -3.02 -0.05 -29.10 16 13 C -0.12 -5.17 6.16 71.24 0.44 -4.73 16 14 S -0.15 -8.86 20.57 -56.49 -1.16 -10.02 16 15 C -0.54 -31.48 9.50 67.95 0.65 -30.84 16 16 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 17 C 0.01 0.65 5.49 84.86 0.47 1.12 16 18 N -0.91 -57.06 13.22 21.65 0.29 -56.77 16 19 Si 1.00 43.98 29.55 68.60 2.03 46.00 16 20 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 C -0.14 -1.46 10.11 30.60 0.31 -1.15 16 24 C -0.17 -2.30 10.10 30.59 0.31 -1.99 16 25 C -0.16 -2.21 9.86 30.59 0.30 -1.91 16 26 C -0.13 -1.02 9.95 30.59 0.30 -0.72 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.03 0.77 7.69 -2.39 -0.02 0.75 16 32 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.10 0.90 8.11 -2.39 -0.02 0.88 16 34 H 0.42 3.00 8.78 -92.71 -0.81 2.18 16 35 H 0.07 2.67 5.23 -2.39 -0.01 2.66 16 36 H 0.06 1.94 7.94 -2.39 -0.02 1.92 16 37 H 0.41 8.67 8.48 -92.71 -0.79 7.88 16 38 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 39 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 40 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 41 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.10 1.51 8.09 -2.39 -0.02 1.49 16 45 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -86.92 415.67 0.92 -86.01 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: -0.63 Total: 25.61 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.40 Total: -8.24 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -4.62 Total: -91.70 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -0.09 Total: -47.67 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -86.92 0.92 -86.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738730308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.979 kcal (2) G-P(sol) polarization free energy of solvation -86.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds