Wall clock time and date at job start Sat Apr 11 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47152 * 2 1 4 4 C 1.53004 * 109.47152 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47412 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99581 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00176 * 180.02562 * 5 4 3 8 8 C 1.47152 * 125.58017 * 359.97271 * 7 5 4 9 9 C 1.54631 * 107.37719 * 179.12317 * 8 7 5 10 10 C 1.53510 * 102.70229 * 339.38485 * 9 8 7 11 11 C 1.51779 * 117.00086 * 164.16529 * 10 9 8 12 12 N 1.47390 * 87.51745 * 92.92595 * 11 10 9 13 13 C 1.34775 * 135.85067 * 205.66091 * 12 11 10 14 14 O 1.21282 * 120.00577 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99768 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47349 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00182 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99949 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99849 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00065 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46755 * 90.00066 * 21 19 17 23 23 H 1.48495 * 109.46931 * 210.00080 * 21 19 17 24 24 H 1.48500 * 109.46738 * 330.00322 * 21 19 17 25 25 C 1.47389 * 88.29438 * 25.91962 * 12 11 10 26 26 C 1.47752 * 125.58050 * 180.02562 * 7 5 4 27 27 H 1.09001 * 109.46595 * 299.99893 * 1 2 3 28 28 H 1.09002 * 109.46690 * 59.99446 * 1 2 3 29 29 H 1.08993 * 109.47411 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47070 * 240.00261 * 2 1 3 31 31 H 1.09003 * 109.47209 * 120.00480 * 2 1 3 32 32 H 1.09001 * 109.47283 * 60.00528 * 3 2 1 33 33 H 1.09002 * 109.47775 * 299.99890 * 3 2 1 34 34 H 1.08995 * 109.47268 * 60.00174 * 4 3 2 35 35 H 1.09003 * 109.47209 * 300.00480 * 4 3 2 36 36 H 1.08997 * 109.86532 * 59.66933 * 8 7 5 37 37 H 1.09002 * 109.97343 * 298.63349 * 8 7 5 38 38 H 1.08998 * 110.76154 * 221.07996 * 9 8 7 39 39 H 1.08998 * 110.76012 * 97.68872 * 9 8 7 40 40 H 1.09008 * 113.54103 * 338.26746 * 11 10 9 41 41 H 1.09003 * 113.61073 * 207.60162 * 11 10 9 42 42 H 1.09005 * 109.46867 * 60.00428 * 15 13 12 43 43 H 1.09000 * 109.47235 * 300.00468 * 15 13 12 44 44 H 0.97005 * 119.99878 * 179.97438 * 20 19 17 45 45 H 1.09003 * 113.53685 * 88.73624 * 25 12 11 46 46 H 1.08989 * 113.54394 * 219.41702 * 25 12 11 47 47 H 1.09001 * 110.40239 * 83.46780 * 26 7 5 48 48 H 1.08991 * 110.40598 * 321.04754 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0725 2.8633 0.0013 6 8 3.2844 3.7851 0.0008 7 7 5.3975 3.1095 0.0014 8 6 6.4580 2.0893 0.0015 9 6 7.8138 2.8325 -0.0210 10 6 7.4304 4.2179 -0.5596 11 6 8.4421 5.3339 -0.3731 12 7 8.9618 4.9996 -1.7112 13 6 10.1405 5.1307 -2.3515 14 8 11.0856 5.6367 -1.7844 15 6 10.2840 4.6487 -3.7721 16 16 11.9711 4.9619 -4.3480 17 6 11.8596 4.3207 -5.9854 18 1 10.9295 3.9002 -6.3384 19 6 12.9666 4.3570 -6.8218 20 7 14.1000 4.8700 -6.3917 21 14 12.8486 3.6765 -8.5575 22 1 12.4232 4.7560 -9.4844 23 1 14.1753 3.1580 -8.9771 24 1 11.8534 2.5749 -8.5906 25 6 7.6297 4.4654 -2.0467 26 6 6.0232 4.4480 0.0025 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9564 -0.8900 34 1 3.9338 0.9285 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 6.3661 1.4594 -0.8833 37 1 6.3858 1.4774 0.9007 38 1 8.5148 2.3371 -0.6927 39 1 8.2287 2.9097 0.9840 40 1 9.1546 5.1459 0.4301 41 1 7.9929 6.3254 -0.3156 42 1 9.5775 5.1807 -4.4094 43 1 10.0783 3.5792 -3.8154 44 1 14.8738 4.8950 -6.9761 45 1 6.9518 5.2132 -2.4583 46 1 7.6638 3.5524 -2.6410 47 1 6.0789 4.8406 1.0179 48 1 5.4644 5.1292 -0.6390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739227552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:29 Heat of formation + Delta-G solvation = -45.691826 kcal Electronic energy + Delta-G solvation = -26595.768345 eV Core-core repulsion = 22777.744516 eV Total energy + Delta-G solvation = -3818.023828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40735 -39.79208 -38.13113 -36.32667 -35.67898 -32.45775 -31.90716 -30.77759 -30.26082 -28.94444 -26.53311 -26.25002 -25.46770 -24.56025 -23.37851 -21.49692 -19.97694 -19.69041 -18.71903 -17.74007 -17.27280 -16.89256 -16.58927 -16.14309 -15.91133 -15.47776 -15.25264 -14.82949 -14.57638 -14.32380 -14.16507 -13.97124 -13.61490 -13.46959 -13.42365 -13.08688 -12.92327 -12.62978 -12.60148 -12.52736 -12.12368 -11.90818 -11.75650 -11.66008 -11.54624 -11.44279 -11.34198 -11.08611 -11.04817 -10.98946 -10.78817 -10.76524 -10.15286 -9.85117 -9.46132 -9.09410 -9.02699 -8.66968 -8.27523 -6.53891 -6.24405 -3.95533 2.30570 2.53321 2.69465 3.00142 3.20346 3.21864 3.27819 3.51166 3.80542 3.90579 4.17339 4.19546 4.31188 4.42030 4.50516 4.52548 4.69644 4.76840 4.79785 4.87627 5.03853 5.10327 5.10782 5.11508 5.20126 5.22647 5.27000 5.31102 5.35373 5.39950 5.41612 5.45146 5.48674 5.53363 5.53700 5.60587 5.73023 5.75654 5.84142 5.84749 5.88221 5.95378 5.97418 6.10226 7.11526 7.56786 7.78909 7.81722 8.32381 8.49111 9.20824 10.83003 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.001988 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.795542 B =14078.498252 C =15468.716579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.136 4.136 5 C 0.528 3.472 6 O -0.540 6.540 7 N -0.621 5.621 8 C 0.102 3.898 9 C -0.104 4.104 10 C -0.116 4.116 11 C 0.125 3.875 12 N -0.651 5.651 13 C 0.562 3.438 14 O -0.513 6.513 15 C -0.144 4.144 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.119 3.881 26 C 0.126 3.874 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.569 -9.679 15.656 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.176 4.176 5 C 0.317 3.683 6 O -0.417 6.417 7 N -0.356 5.356 8 C -0.021 4.021 9 C -0.142 4.142 10 C -0.117 4.117 11 C 0.001 3.999 12 N -0.390 5.390 13 C 0.352 3.648 14 O -0.387 6.387 15 C -0.295 4.295 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.004 4.004 26 C 0.003 3.997 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.095 0.905 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.239 -8.393 16.326 28.837 hybrid contribution -1.052 -1.006 -1.852 2.356 sum -23.291 -9.399 14.474 28.988 Atomic orbital electron populations 1.21761 0.95648 1.01592 1.02048 1.21548 0.96211 0.96486 1.02035 1.21394 0.92575 0.96728 1.03663 1.21696 0.98089 0.93446 1.04396 1.20462 0.80204 0.91935 0.75652 1.90720 1.54277 1.46780 1.49956 1.48625 1.05189 1.07949 1.73825 1.22153 0.86617 0.91226 1.02146 1.22221 0.96032 0.93137 1.02762 1.22250 0.95148 0.97045 0.97299 1.22540 0.93232 0.97119 0.86966 1.49773 1.09680 1.63641 1.15912 1.19943 0.80000 0.77559 0.87283 1.90723 1.37427 1.43061 1.67444 1.23471 1.07985 1.03926 0.94099 1.85408 1.03029 1.80565 1.14309 1.22853 1.00493 1.46520 0.98539 0.90932 1.24993 0.94471 0.95014 0.99064 1.70018 1.01335 1.42307 1.36556 0.86164 0.77701 0.79105 0.82510 1.20243 1.20710 1.19693 1.22777 0.83502 0.99289 0.94873 1.21823 0.90996 0.85326 1.01583 0.92674 0.92617 0.92741 0.91909 0.91994 0.91235 0.91142 0.88836 0.88967 0.90915 0.90955 0.89042 0.89489 0.89879 0.89584 0.89350 0.89362 0.92146 0.89469 0.89990 0.90547 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.13 -0.63 5.93 -26.73 -0.16 -0.79 16 3 C -0.11 -0.70 4.50 -26.73 -0.12 -0.82 16 4 C -0.14 -0.81 4.89 -27.88 -0.14 -0.95 16 5 C 0.53 4.86 7.85 -10.99 -0.09 4.77 16 6 O -0.54 -7.09 16.26 5.56 0.09 -7.00 16 7 N -0.62 -4.78 3.34 -170.98 -0.57 -5.35 16 8 C 0.10 0.55 6.50 -2.83 -0.02 0.53 16 9 C -0.10 -0.68 6.40 -25.61 -0.16 -0.84 16 10 C -0.12 -0.90 1.06 -155.22 -0.16 -1.07 16 11 C 0.13 1.25 8.02 -7.48 -0.06 1.19 16 12 N -0.65 -8.88 3.70 -185.73 -0.69 -9.57 16 13 C 0.56 10.71 8.09 -10.98 -0.09 10.62 16 14 O -0.51 -11.88 16.63 5.56 0.09 -11.78 16 15 C -0.14 -2.94 5.98 36.01 0.22 -2.73 16 16 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 17 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.02 13.22 55.49 0.73 -25.28 16 21 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 25 C 0.12 1.15 7.78 -7.33 -0.06 1.09 16 26 C 0.13 0.96 6.36 -3.21 -0.02 0.94 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.84 8.13 -51.92 -0.42 0.42 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 46 H 0.08 0.76 8.14 -51.94 -0.42 0.33 16 47 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.72 7.94 -51.93 -0.41 0.31 16 LS Contribution 409.53 15.07 6.17 6.17 Total: -1.00 -36.55 409.53 -10.10 -46.64 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -8.40 Total: -4.89 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -0.29 Total: -1.36 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: -0.52 Total: -40.20 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.18 Total: -18.79 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.55 -10.10 -46.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739227552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.951 kcal (2) G-P(sol) polarization free energy of solvation -36.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds