Wall clock time and date at job start Sat Apr 11 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47152 * 2 1 4 4 C 1.53004 * 109.47152 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47412 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99581 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00176 * 180.02562 * 5 4 3 8 8 C 1.47152 * 125.58017 * 359.97271 * 7 5 4 9 9 C 1.54631 * 107.37719 * 179.12317 * 8 7 5 10 10 C 1.53510 * 102.70229 * 339.38485 * 9 8 7 11 11 C 1.51779 * 117.00086 * 164.16529 * 10 9 8 12 12 N 1.47390 * 87.51745 * 92.92595 * 11 10 9 13 13 C 1.34775 * 135.85067 * 205.66091 * 12 11 10 14 14 O 1.21282 * 120.00577 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99768 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47349 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00182 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99949 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99849 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00065 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46755 * 90.00066 * 21 19 17 23 23 H 1.48495 * 109.46931 * 210.00080 * 21 19 17 24 24 H 1.48500 * 109.46738 * 330.00322 * 21 19 17 25 25 C 1.47389 * 88.29438 * 25.91962 * 12 11 10 26 26 C 1.47752 * 125.58050 * 180.02562 * 7 5 4 27 27 H 1.09001 * 109.46595 * 299.99893 * 1 2 3 28 28 H 1.09002 * 109.46690 * 59.99446 * 1 2 3 29 29 H 1.08993 * 109.47411 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47070 * 240.00261 * 2 1 3 31 31 H 1.09003 * 109.47209 * 120.00480 * 2 1 3 32 32 H 1.09001 * 109.47283 * 60.00528 * 3 2 1 33 33 H 1.09002 * 109.47775 * 299.99890 * 3 2 1 34 34 H 1.08995 * 109.47268 * 60.00174 * 4 3 2 35 35 H 1.09003 * 109.47209 * 300.00480 * 4 3 2 36 36 H 1.08997 * 109.86532 * 59.66933 * 8 7 5 37 37 H 1.09002 * 109.97343 * 298.63349 * 8 7 5 38 38 H 1.08998 * 110.76154 * 221.07996 * 9 8 7 39 39 H 1.08998 * 110.76012 * 97.68872 * 9 8 7 40 40 H 1.09008 * 113.54103 * 338.26746 * 11 10 9 41 41 H 1.09003 * 113.61073 * 207.60162 * 11 10 9 42 42 H 1.09005 * 109.46867 * 60.00428 * 15 13 12 43 43 H 1.09000 * 109.47235 * 300.00468 * 15 13 12 44 44 H 0.97005 * 119.99878 * 179.97438 * 20 19 17 45 45 H 1.09003 * 113.53685 * 88.73624 * 25 12 11 46 46 H 1.08989 * 113.54394 * 219.41702 * 25 12 11 47 47 H 1.09001 * 110.40239 * 83.46780 * 26 7 5 48 48 H 1.08991 * 110.40598 * 321.04754 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0725 2.8633 0.0013 6 8 3.2844 3.7851 0.0008 7 7 5.3975 3.1095 0.0014 8 6 6.4580 2.0893 0.0015 9 6 7.8138 2.8325 -0.0210 10 6 7.4304 4.2179 -0.5596 11 6 8.4421 5.3339 -0.3731 12 7 8.9618 4.9996 -1.7112 13 6 10.1405 5.1307 -2.3515 14 8 11.0856 5.6367 -1.7844 15 6 10.2840 4.6487 -3.7721 16 16 11.9711 4.9619 -4.3480 17 6 11.8596 4.3207 -5.9854 18 1 10.9295 3.9002 -6.3384 19 6 12.9666 4.3570 -6.8218 20 7 14.1000 4.8700 -6.3917 21 14 12.8486 3.6765 -8.5575 22 1 12.4232 4.7560 -9.4844 23 1 14.1753 3.1580 -8.9771 24 1 11.8534 2.5749 -8.5906 25 6 7.6297 4.4654 -2.0467 26 6 6.0232 4.4480 0.0025 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9564 -0.8900 34 1 3.9338 0.9285 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 6.3661 1.4594 -0.8833 37 1 6.3858 1.4774 0.9007 38 1 8.5148 2.3371 -0.6927 39 1 8.2287 2.9097 0.9840 40 1 9.1546 5.1459 0.4301 41 1 7.9929 6.3254 -0.3156 42 1 9.5775 5.1807 -4.4094 43 1 10.0783 3.5792 -3.8154 44 1 14.8738 4.8950 -6.9761 45 1 6.9518 5.2132 -2.4583 46 1 7.6638 3.5524 -2.6410 47 1 6.0789 4.8406 1.0179 48 1 5.4644 5.1292 -0.6390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739227552.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:28 Heat of formation + Delta-G solvation = -69.197879 kcal Electronic energy + Delta-G solvation = -26596.787644 eV Core-core repulsion = 22777.744516 eV Total energy + Delta-G solvation = -3819.043127 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.23549 -40.63659 -39.38851 -37.16312 -36.18838 -34.60255 -32.81189 -31.56141 -31.06777 -29.93199 -27.78064 -27.37067 -27.02556 -25.20046 -23.90347 -21.94730 -21.10095 -20.36393 -19.82454 -19.35719 -18.09471 -17.78917 -17.54499 -17.05044 -16.91077 -16.84149 -16.43437 -16.05826 -15.75975 -15.53679 -15.11993 -14.75165 -14.56039 -14.42117 -14.10391 -14.02551 -13.86749 -13.60823 -13.58442 -13.36583 -13.16958 -13.13480 -12.90642 -12.68564 -12.57295 -12.31498 -12.16875 -12.11348 -12.03269 -11.83510 -11.75133 -11.50452 -11.42085 -11.15861 -10.98013 -10.83138 -10.31339 -9.81964 -9.64459 -8.70035 -8.36190 -6.15189 1.18479 1.41434 1.41776 1.52528 1.55067 1.65248 1.91194 1.99164 2.25667 2.98002 3.05620 3.19631 3.29465 3.55001 3.69728 3.77275 3.87753 3.96178 4.07417 4.21646 4.28140 4.36423 4.37858 4.42936 4.43443 4.48474 4.50741 4.56294 4.63388 4.65828 4.71043 4.77752 4.81029 4.83379 4.92731 4.96392 5.02775 5.09362 5.13714 5.17799 5.26264 5.33781 5.39996 5.41060 5.52405 6.18113 6.51029 6.55823 7.04888 7.07248 7.16651 8.73053 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.001988 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.795542 B =14078.498252 C =15468.716579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.129 4.129 5 C 0.522 3.478 6 O -0.589 6.589 7 N -0.620 5.620 8 C 0.103 3.897 9 C -0.104 4.104 10 C -0.094 4.094 11 C 0.120 3.880 12 N -0.649 5.649 13 C 0.561 3.439 14 O -0.567 6.567 15 C -0.118 4.118 16 S -0.149 6.149 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.999 3.001 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.257 1.257 25 C 0.114 3.886 26 C 0.128 3.872 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.272 0.728 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.460 -12.022 15.527 32.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.169 4.169 5 C 0.313 3.687 6 O -0.470 6.470 7 N -0.353 5.353 8 C -0.019 4.019 9 C -0.141 4.141 10 C -0.096 4.096 11 C -0.003 4.003 12 N -0.385 5.385 13 C 0.351 3.649 14 O -0.445 6.445 15 C -0.269 4.269 16 S 0.078 5.922 17 C -0.695 4.695 18 H 0.100 0.900 19 C -0.190 4.190 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.181 1.181 25 C -0.008 4.008 26 C 0.005 3.995 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.081 0.919 45 H 0.118 0.882 46 H 0.111 0.889 47 H 0.103 0.897 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.179 -10.769 16.224 31.045 hybrid contribution -0.592 -0.252 -1.690 1.808 sum -24.770 -11.020 14.534 30.761 Atomic orbital electron populations 1.21793 0.96025 1.01985 1.01580 1.21521 0.95903 0.95367 1.02979 1.21342 0.93430 0.97450 1.01962 1.21728 0.97226 0.91543 1.06376 1.21056 0.80177 0.92753 0.74741 1.90701 1.55546 1.48398 1.52352 1.48697 1.05333 1.08437 1.72879 1.22305 0.84856 0.90683 1.04063 1.22270 0.96719 0.92063 1.03088 1.22018 0.94733 0.97106 0.95716 1.22843 0.93519 0.98947 0.84943 1.49695 1.09399 1.62029 1.17358 1.19587 0.81128 0.77467 0.86746 1.90697 1.39739 1.45765 1.68347 1.23259 1.02987 1.05282 0.95412 1.85580 1.09741 1.81351 1.15489 1.23184 1.01124 1.46537 0.98641 0.89968 1.26131 0.93856 0.95064 1.03998 1.70182 1.02307 1.43711 1.38464 0.84952 0.78142 0.78725 0.76157 1.19393 1.20176 1.18092 1.23113 0.81133 0.99983 0.96552 1.21761 0.90343 0.85598 1.01847 0.93064 0.93259 0.91881 0.91070 0.90810 0.92840 0.93083 0.86903 0.86579 0.89498 0.88631 0.89632 0.88497 0.89935 0.88093 0.88008 0.87498 0.91934 0.88167 0.88904 0.89699 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.12 -0.97 5.93 30.59 0.18 -0.79 16 3 C -0.10 -1.26 4.50 30.59 0.14 -1.12 16 4 C -0.13 -1.18 4.89 29.85 0.15 -1.03 16 5 C 0.52 8.62 7.85 87.66 0.69 9.31 16 6 O -0.59 -15.25 16.26 -3.03 -0.05 -15.30 16 7 N -0.62 -7.82 3.34 -813.24 -2.72 -10.54 16 8 C 0.10 0.71 6.50 86.81 0.56 1.28 16 9 C -0.10 -1.03 6.40 31.32 0.20 -0.83 16 10 C -0.09 -1.23 1.06 -52.62 -0.06 -1.29 16 11 C 0.12 2.19 8.02 83.67 0.67 2.87 16 12 N -0.65 -16.81 3.70 -859.92 -3.18 -19.98 16 13 C 0.56 21.37 8.09 87.66 0.71 22.08 16 14 O -0.57 -27.04 16.63 -3.04 -0.05 -27.09 16 15 C -0.12 -4.79 5.98 71.24 0.43 -4.37 16 16 S -0.15 -8.32 20.57 -56.49 -1.16 -9.48 16 17 C -0.55 -31.22 9.50 67.96 0.65 -30.57 16 18 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 19 C 0.01 0.82 5.49 84.86 0.47 1.28 16 20 N -0.91 -55.76 13.22 21.65 0.29 -55.47 16 21 Si 1.00 43.28 29.55 68.60 2.03 45.31 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 25 C 0.11 1.92 7.78 83.76 0.65 2.57 16 26 C 0.13 1.67 6.36 86.23 0.55 2.22 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.47 8.14 -2.38 -0.02 0.46 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 33 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 34 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.09 1.02 8.07 -2.39 -0.02 1.00 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.57 8.13 -2.38 -0.02 1.55 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 43 H 0.11 3.88 8.14 -2.40 -0.02 3.87 16 44 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 45 H 0.10 1.51 8.06 -2.39 -0.02 1.49 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.07 1.16 7.94 -2.39 -0.02 1.14 16 Total: -1.00 -83.30 409.53 2.77 -80.53 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.92 Total: 11.12 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 6.69 Total: 0.90 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -5.61 Total: -86.00 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -0.10 Total: -42.39 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -83.30 2.77 -80.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739227552.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.335 kcal (2) G-P(sol) polarization free energy of solvation -83.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds