Wall clock time and date at job start Sat Apr 11 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99632 * 2 1 4 4 C 1.50699 * 119.99951 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47263 * 94.99416 * 4 2 1 6 6 C 1.50697 * 109.46950 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00223 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99648 * 180.02562 * 6 5 4 9 9 C 1.47420 * 125.65235 * 359.97370 * 8 6 5 10 10 C 1.54910 * 104.83598 * 155.90710 * 9 8 6 11 11 C 1.55162 * 101.57962 * 37.01398 * 10 9 8 12 12 C 1.53000 * 110.71879 * 205.96023 * 11 10 9 13 13 N 1.46497 * 110.72244 * 82.85757 * 11 10 9 14 14 C 1.34780 * 119.99566 * 61.45915 * 13 11 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 11 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47282 * 59.99711 * 22 20 18 24 24 H 1.48497 * 109.47200 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47280 * 300.00084 * 22 20 18 26 26 C 1.47032 * 125.64760 * 180.02562 * 8 6 5 27 27 H 1.08001 * 120.00091 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00008 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46987 * 239.99794 * 3 2 1 30 30 H 1.08999 * 109.47748 * 0.02562 * 3 2 1 31 31 H 1.09006 * 109.46605 * 120.00763 * 3 2 1 32 32 H 1.09006 * 109.46990 * 334.99207 * 4 2 1 33 33 H 1.09006 * 109.47132 * 214.99797 * 4 2 1 34 34 H 1.09007 * 109.46803 * 60.00176 * 5 4 2 35 35 H 1.08998 * 109.47035 * 300.00341 * 5 4 2 36 36 H 1.09002 * 110.36953 * 37.06898 * 9 8 6 37 37 H 1.09006 * 110.36962 * 274.74766 * 9 8 6 38 38 H 1.08996 * 111.00415 * 278.93995 * 10 9 8 39 39 H 1.09001 * 111.03747 * 155.09578 * 10 9 8 40 40 H 1.09005 * 109.46948 * 296.15296 * 12 11 10 41 41 H 1.08997 * 109.47181 * 56.15210 * 12 11 10 42 42 H 1.08996 * 109.47176 * 176.15684 * 12 11 10 43 43 H 0.96995 * 120.00423 * 241.45221 * 13 11 10 44 44 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 45 45 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 46 46 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.88048 * 61.60439 * 26 8 6 48 48 H 1.09001 * 109.87994 * 300.43790 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 6 3.1813 -2.9881 -1.4382 7 8 3.4060 -3.5590 -0.3920 8 7 3.6067 -3.5201 -2.6011 9 6 3.4038 -2.9349 -3.9389 10 6 4.5424 -3.5258 -4.8073 11 6 4.6422 -4.9701 -4.2492 12 6 6.0468 -5.5375 -4.4637 13 7 3.6353 -5.8357 -4.8682 14 6 3.6531 -6.0447 -6.1996 15 8 4.5023 -5.5158 -6.8852 16 6 2.6171 -6.9347 -6.8365 17 16 2.9051 -7.0141 -8.6217 18 6 1.5905 -8.0869 -9.0963 19 1 0.9136 -8.4747 -8.3494 20 6 1.4254 -8.4343 -10.4300 21 7 2.2506 -7.9620 -11.3401 22 14 0.0320 -9.5722 -10.9331 23 1 -1.2676 -8.9591 -10.5585 24 1 0.0738 -9.7866 -12.4019 25 1 0.1825 -10.8762 -10.2386 26 6 4.3493 -4.7808 -2.7458 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.6901 1.3629 -0.8899 30 1 1.3551 2.1336 0.0005 31 1 2.6902 1.3628 0.8900 32 1 1.4386 -2.0856 0.4335 33 1 2.9743 -1.1991 0.5889 34 1 3.0522 -0.9028 -1.8718 35 1 1.5165 -1.7893 -2.0271 36 1 3.4854 -1.8488 -3.8943 37 1 2.4321 -3.2270 -4.3374 38 1 5.4742 -2.9819 -4.6525 39 1 4.2669 -3.5327 -5.8619 40 1 6.2462 -5.6195 -5.5322 41 1 6.7806 -4.8733 -4.0071 42 1 6.1142 -6.5238 -4.0048 43 1 2.9560 -6.2585 -4.3200 44 1 2.6877 -7.9361 -6.4118 45 1 1.6234 -6.5289 -6.6469 46 1 2.1350 -8.2045 -12.2723 47 1 3.7459 -5.6107 -2.3783 48 1 5.2853 -4.7256 -2.1900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739669351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:34 Heat of formation + Delta-G solvation = -64.541009 kcal Electronic energy + Delta-G solvation = -26899.803524 eV Core-core repulsion = 23080.962334 eV Total energy + Delta-G solvation = -3818.841190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82805 -39.46875 -37.65731 -36.64974 -34.31966 -32.46172 -32.05598 -31.36806 -29.93819 -28.63790 -27.70586 -27.16362 -25.51400 -24.51547 -23.19614 -21.36478 -19.80548 -19.24147 -18.82005 -17.93538 -17.29571 -16.87962 -16.35977 -16.06168 -15.55049 -15.25412 -14.92881 -14.83093 -14.66524 -14.20176 -14.01596 -13.82082 -13.46791 -13.37801 -13.25635 -13.05708 -12.90309 -12.73038 -12.47128 -12.40832 -12.38779 -12.06695 -12.01286 -11.56767 -11.43132 -11.37555 -11.26921 -11.08612 -11.06480 -10.98507 -10.79574 -10.14757 -9.85795 -9.42106 -9.34916 -9.09793 -8.99837 -8.96025 -8.28825 -6.53814 -6.24986 -3.95688 1.81863 2.35209 2.64906 2.95226 2.99834 3.21251 3.25081 3.27882 3.63043 3.95830 4.17533 4.30655 4.32614 4.49150 4.63663 4.66816 4.76322 4.84421 4.95468 5.05042 5.06975 5.10405 5.12446 5.16665 5.24357 5.31516 5.37708 5.45437 5.48960 5.56232 5.56888 5.60390 5.66517 5.72930 5.77237 5.79047 5.83145 5.91279 6.00856 6.09912 6.25323 6.25956 6.49634 6.61623 7.17737 7.56152 7.62606 7.86298 8.31710 8.52936 9.20528 10.82276 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.002071 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.769856 B =13516.087967 C =14508.897990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 C -0.120 4.120 4 C -0.070 4.070 5 C -0.129 4.129 6 C 0.528 3.472 7 O -0.543 6.543 8 N -0.619 5.619 9 C 0.098 3.902 10 C -0.139 4.139 11 C 0.167 3.833 12 C -0.156 4.156 13 N -0.729 5.729 14 C 0.537 3.463 15 O -0.511 6.511 16 C -0.155 4.155 17 S -0.057 6.057 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.108 3.892 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.399 0.601 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.269 0.731 47 H 0.074 0.926 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.255 14.771 21.466 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.128 4.128 3 C -0.177 4.177 4 C -0.108 4.108 5 C -0.169 4.169 6 C 0.317 3.683 7 O -0.420 6.420 8 N -0.354 5.354 9 C -0.025 4.025 10 C -0.178 4.178 11 C 0.080 3.920 12 C -0.214 4.214 13 N -0.384 5.384 14 C 0.323 3.677 15 O -0.385 6.385 16 C -0.306 4.306 17 S 0.169 5.831 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.015 4.015 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.233 0.767 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.820 15.392 20.761 25.998 hybrid contribution -2.335 -1.610 0.619 2.902 sum 0.485 13.783 21.380 25.442 Atomic orbital electron populations 1.23776 0.95197 1.01980 1.02063 1.21761 0.95456 0.95642 0.99956 1.20888 1.00293 0.94289 1.02240 1.20401 1.00933 0.94348 0.95113 1.21618 1.01155 0.94680 0.99465 1.20424 0.79043 0.86841 0.81947 1.90713 1.57447 1.63088 1.30742 1.48577 1.56384 1.23713 1.06706 1.22454 0.99800 0.98552 0.81662 1.23230 0.98618 0.94260 1.01679 1.21128 0.89803 0.90662 0.90393 1.22093 0.93477 1.00835 1.05013 1.46126 1.33068 1.50998 1.08205 1.20263 0.85410 0.80909 0.81074 1.90666 1.37345 1.48675 1.61854 1.23555 1.00036 1.01045 1.05943 1.85344 1.41899 1.63777 0.92051 1.22826 1.16103 1.33765 0.95829 0.91010 1.24985 0.96875 0.96265 0.95410 1.70001 1.35963 1.42492 1.01801 0.86231 0.81304 0.80463 0.77554 1.19939 1.20797 1.19938 1.22193 0.97367 0.86797 0.95099 0.88424 0.88426 0.91548 0.91990 0.91542 0.90513 0.90476 0.88780 0.88719 0.90276 0.90850 0.89687 0.87604 0.89434 0.91719 0.92181 0.76674 0.89264 0.89321 0.92109 0.90818 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.29 13.90 29.01 0.40 -0.89 16 2 C -0.13 -0.88 5.31 -101.07 -0.54 -1.42 16 3 C -0.12 -0.67 10.12 36.00 0.36 -0.30 16 4 C -0.07 -0.55 4.67 -27.88 -0.13 -0.68 16 5 C -0.13 -0.97 4.69 -27.89 -0.13 -1.10 16 6 C 0.53 5.57 7.85 -10.99 -0.09 5.49 16 7 O -0.54 -7.63 16.31 5.56 0.09 -7.54 16 8 N -0.62 -5.96 3.33 -170.51 -0.57 -6.53 16 9 C 0.10 0.83 6.67 -2.53 -0.02 0.82 16 10 C -0.14 -1.42 5.88 -24.58 -0.14 -1.57 16 11 C 0.17 1.78 0.80 -129.98 -0.10 1.67 16 12 C -0.16 -1.71 8.45 37.16 0.31 -1.39 16 13 N -0.73 -8.78 5.14 -45.91 -0.24 -9.02 16 14 C 0.54 8.96 7.20 -10.98 -0.08 8.88 16 15 O -0.51 -10.13 12.60 5.56 0.07 -10.06 16 16 C -0.16 -2.95 6.16 36.01 0.22 -2.72 16 17 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 18 C -0.54 -14.96 9.50 30.94 0.29 -14.66 16 19 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.67 13.22 55.49 0.73 -24.94 16 22 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.11 1.06 6.16 -3.06 -0.02 1.04 16 27 H 0.10 0.56 7.83 -52.49 -0.41 0.15 16 28 H 0.10 0.64 7.99 -52.48 -0.42 0.22 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.30 7.78 -51.93 -0.40 -0.10 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.68 7.95 -51.93 -0.41 0.27 16 33 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 34 H 0.09 0.56 7.85 -51.93 -0.41 0.15 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.52 7.48 -51.93 -0.39 0.13 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 39 H 0.11 1.37 6.38 -51.93 -0.33 1.04 16 40 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.40 3.99 8.27 -40.82 -0.34 3.65 16 44 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 45 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.07 0.72 7.72 -51.93 -0.40 0.32 16 48 H 0.08 0.80 7.82 -51.93 -0.41 0.40 16 LS Contribution 405.75 15.07 6.11 6.11 Total: -1.00 -33.92 405.75 -8.79 -42.71 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.01 Total: 1.75 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 0.25 Total: -4.86 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.07 Total: -40.49 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.16 Total: -17.60 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.92 -8.79 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739669351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.828 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds