Wall clock time and date at job start Sat Apr 11 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99632 * 2 1 4 4 C 1.50699 * 119.99951 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47263 * 94.99416 * 4 2 1 6 6 C 1.50697 * 109.46950 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00223 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99648 * 180.02562 * 6 5 4 9 9 C 1.47420 * 125.65235 * 359.97370 * 8 6 5 10 10 C 1.54910 * 104.83598 * 155.90710 * 9 8 6 11 11 C 1.55162 * 101.57962 * 37.01398 * 10 9 8 12 12 C 1.53000 * 110.71879 * 205.96023 * 11 10 9 13 13 N 1.46497 * 110.72244 * 82.85757 * 11 10 9 14 14 C 1.34780 * 119.99566 * 61.45915 * 13 11 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 11 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 11 17 17 S 1.81002 * 109.47156 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00049 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00026 * 359.97438 * 18 17 16 20 20 C 1.38806 * 120.00056 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99640 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00053 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47282 * 59.99711 * 22 20 18 24 24 H 1.48497 * 109.47200 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47280 * 300.00084 * 22 20 18 26 26 C 1.47032 * 125.64760 * 180.02562 * 8 6 5 27 27 H 1.08001 * 120.00091 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00008 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46987 * 239.99794 * 3 2 1 30 30 H 1.08999 * 109.47748 * 0.02562 * 3 2 1 31 31 H 1.09006 * 109.46605 * 120.00763 * 3 2 1 32 32 H 1.09006 * 109.46990 * 334.99207 * 4 2 1 33 33 H 1.09006 * 109.47132 * 214.99797 * 4 2 1 34 34 H 1.09007 * 109.46803 * 60.00176 * 5 4 2 35 35 H 1.08998 * 109.47035 * 300.00341 * 5 4 2 36 36 H 1.09002 * 110.36953 * 37.06898 * 9 8 6 37 37 H 1.09006 * 110.36962 * 274.74766 * 9 8 6 38 38 H 1.08996 * 111.00415 * 278.93995 * 10 9 8 39 39 H 1.09001 * 111.03747 * 155.09578 * 10 9 8 40 40 H 1.09005 * 109.46948 * 296.15296 * 12 11 10 41 41 H 1.08997 * 109.47181 * 56.15210 * 12 11 10 42 42 H 1.08996 * 109.47176 * 176.15684 * 12 11 10 43 43 H 0.96995 * 120.00423 * 241.45221 * 13 11 10 44 44 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 45 45 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 46 46 H 0.97010 * 119.99946 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.88048 * 61.60439 * 26 8 6 48 48 H 1.09001 * 109.87994 * 300.43790 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 6 3.1813 -2.9881 -1.4382 7 8 3.4060 -3.5590 -0.3920 8 7 3.6067 -3.5201 -2.6011 9 6 3.4038 -2.9349 -3.9389 10 6 4.5424 -3.5258 -4.8073 11 6 4.6422 -4.9701 -4.2492 12 6 6.0468 -5.5375 -4.4637 13 7 3.6353 -5.8357 -4.8682 14 6 3.6531 -6.0447 -6.1996 15 8 4.5023 -5.5158 -6.8852 16 6 2.6171 -6.9347 -6.8365 17 16 2.9051 -7.0141 -8.6217 18 6 1.5905 -8.0869 -9.0963 19 1 0.9136 -8.4747 -8.3494 20 6 1.4254 -8.4343 -10.4300 21 7 2.2506 -7.9620 -11.3401 22 14 0.0320 -9.5722 -10.9331 23 1 -1.2676 -8.9591 -10.5585 24 1 0.0738 -9.7866 -12.4019 25 1 0.1825 -10.8762 -10.2386 26 6 4.3493 -4.7808 -2.7458 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.6901 1.3629 -0.8899 30 1 1.3551 2.1336 0.0005 31 1 2.6902 1.3628 0.8900 32 1 1.4386 -2.0856 0.4335 33 1 2.9743 -1.1991 0.5889 34 1 3.0522 -0.9028 -1.8718 35 1 1.5165 -1.7893 -2.0271 36 1 3.4854 -1.8488 -3.8943 37 1 2.4321 -3.2270 -4.3374 38 1 5.4742 -2.9819 -4.6525 39 1 4.2669 -3.5327 -5.8619 40 1 6.2462 -5.6195 -5.5322 41 1 6.7806 -4.8733 -4.0071 42 1 6.1142 -6.5238 -4.0048 43 1 2.9560 -6.2585 -4.3200 44 1 2.6877 -7.9361 -6.4118 45 1 1.6234 -6.5289 -6.6469 46 1 2.1350 -8.2045 -12.2723 47 1 3.7459 -5.6107 -2.3783 48 1 5.2853 -4.7256 -2.1900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739669351.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:33 Heat of formation + Delta-G solvation = -86.149831 kcal Electronic energy + Delta-G solvation = -26900.740553 eV Core-core repulsion = 23080.962334 eV Total energy + Delta-G solvation = -3819.778219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76332 -40.52070 -38.67077 -37.25306 -35.36198 -34.57523 -33.07596 -32.09602 -30.77564 -30.01440 -28.21646 -27.89096 -27.64029 -25.22401 -23.96128 -22.52703 -20.76646 -20.18732 -19.77920 -19.35973 -18.18233 -17.80081 -17.56839 -16.96672 -16.86975 -16.43982 -16.38422 -16.03252 -15.56756 -15.26739 -14.96696 -14.72445 -14.55392 -14.35398 -14.23922 -14.01832 -13.91961 -13.72935 -13.59333 -13.28647 -13.15672 -13.10167 -12.97000 -12.87206 -12.61928 -12.50744 -12.45656 -12.25392 -11.97339 -11.92505 -11.82802 -11.73338 -11.12458 -10.98732 -10.71931 -10.26277 -10.13179 -9.92275 -9.77011 -8.63640 -8.34099 -6.10718 1.27133 1.30388 1.43382 1.46697 1.55451 1.56679 1.64774 1.90752 2.23855 2.29765 2.99986 3.14992 3.33147 3.52367 3.61218 3.83541 3.96035 3.97633 4.05102 4.19286 4.20100 4.23284 4.32078 4.34206 4.47640 4.53673 4.59160 4.63684 4.69840 4.73619 4.75581 4.83588 4.88141 4.94644 5.01819 5.05286 5.08392 5.13482 5.18253 5.21201 5.31140 5.42389 5.57116 5.76258 5.99654 6.20045 6.38995 6.51564 7.06585 7.07639 7.26461 8.74455 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.002071 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.769856 B =13516.087967 C =14508.897990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.121 4.121 4 C -0.067 4.067 5 C -0.122 4.122 6 C 0.526 3.474 7 O -0.583 6.583 8 N -0.616 5.616 9 C 0.103 3.897 10 C -0.138 4.138 11 C 0.166 3.834 12 C -0.153 4.153 13 N -0.707 5.707 14 C 0.543 3.457 15 O -0.546 6.546 16 C -0.133 4.133 17 S -0.140 6.140 18 C -0.549 4.549 19 H 0.080 0.920 20 C 0.015 3.985 21 N -0.909 5.909 22 Si 0.995 3.005 23 H -0.263 1.263 24 H -0.279 1.279 25 H -0.264 1.264 26 C 0.113 3.887 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.412 0.588 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.271 0.729 47 H 0.076 0.924 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 15.377 22.935 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.133 4.133 3 C -0.178 4.178 4 C -0.105 4.105 5 C -0.162 4.162 6 C 0.317 3.683 7 O -0.463 6.463 8 N -0.350 5.350 9 C -0.019 4.019 10 C -0.177 4.177 11 C 0.080 3.920 12 C -0.211 4.211 13 N -0.362 5.362 14 C 0.329 3.671 15 O -0.422 6.422 16 C -0.285 4.285 17 S 0.087 5.913 18 C -0.697 4.697 19 H 0.098 0.902 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.816 3.184 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.189 1.189 26 C -0.010 4.010 27 H 0.126 0.874 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.249 0.751 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.588 16.006 22.263 27.465 hybrid contribution -1.904 -1.766 0.279 2.612 sum -0.317 14.240 22.541 26.664 Atomic orbital electron populations 1.23896 0.95282 1.02408 1.01810 1.21805 0.95558 0.95669 1.00226 1.20918 1.00469 0.93675 1.02691 1.20329 1.00331 0.94550 0.95303 1.21636 1.01589 0.93494 0.99441 1.20942 0.78606 0.87413 0.81352 1.90699 1.59117 1.64347 1.32128 1.48608 1.55910 1.23516 1.06977 1.22489 0.98903 1.00036 0.80485 1.23174 1.00003 0.94161 1.00330 1.21241 0.89102 0.90664 0.91025 1.22046 0.94198 1.01830 1.03028 1.45878 1.33361 1.50363 1.06562 1.19842 0.84496 0.80483 0.82326 1.90672 1.38499 1.50037 1.63036 1.23403 1.01760 1.02785 1.00514 1.85461 1.42745 1.64116 0.98970 1.23178 1.16245 1.33773 0.96476 0.90180 1.26072 0.99653 0.97904 0.95386 1.70161 1.38080 1.44133 1.02185 0.85059 0.77819 0.78265 0.77212 1.18713 1.20399 1.18860 1.22114 0.97824 0.87190 0.93882 0.87403 0.88697 0.90737 0.91302 0.91448 0.92078 0.91407 0.86604 0.87455 0.87584 0.90882 0.88356 0.90280 0.92599 0.89595 0.91675 0.75132 0.87794 0.87582 0.92008 0.90613 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.32 13.90 67.78 0.94 -1.38 16 2 C -0.13 -1.60 5.31 -16.49 -0.09 -1.69 16 3 C -0.12 -1.09 10.12 71.24 0.72 -0.37 16 4 C -0.07 -0.98 4.67 29.85 0.14 -0.84 16 5 C -0.12 -1.54 4.69 29.85 0.14 -1.40 16 6 C 0.53 10.11 7.85 87.66 0.69 10.80 16 7 O -0.58 -15.85 16.31 -3.02 -0.05 -15.90 16 8 N -0.62 -10.42 3.33 -811.78 -2.70 -13.12 16 9 C 0.10 1.48 6.67 86.86 0.58 2.06 16 10 C -0.14 -2.61 5.88 31.99 0.19 -2.42 16 11 C 0.17 3.28 0.80 4.79 0.00 3.28 16 12 C -0.15 -3.19 8.45 71.98 0.61 -2.58 16 13 N -0.71 -16.02 5.14 -417.55 -2.15 -18.17 16 14 C 0.54 17.89 7.20 87.66 0.63 18.52 16 15 O -0.55 -22.04 12.60 -3.03 -0.04 -22.08 16 16 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 17 S -0.14 -7.47 20.57 -56.49 -1.16 -8.63 16 18 C -0.55 -30.71 9.50 67.96 0.65 -30.07 16 19 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 20 C 0.01 0.83 5.49 84.86 0.47 1.30 16 21 N -0.91 -54.88 13.22 21.65 0.29 -54.59 16 22 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 26 C 0.11 1.97 6.16 86.73 0.53 2.50 16 27 H 0.11 1.03 7.83 -2.91 -0.02 1.01 16 28 H 0.09 1.14 7.99 -2.91 -0.02 1.12 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.53 7.78 -2.39 -0.02 0.51 16 31 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.06 1.07 7.95 -2.38 -0.02 1.05 16 33 H 0.07 1.11 8.10 -2.38 -0.02 1.09 16 34 H 0.12 0.98 7.85 -2.38 -0.02 0.96 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.11 1.00 7.48 -2.39 -0.02 0.98 16 37 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.10 1.60 8.05 -2.39 -0.02 1.58 16 39 H 0.08 2.02 6.38 -2.39 -0.02 2.00 16 40 H 0.05 1.57 6.38 -2.38 -0.02 1.55 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.41 7.33 8.27 -92.71 -0.77 6.56 16 44 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 45 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 46 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 47 H 0.08 1.32 7.72 -2.39 -0.02 1.30 16 48 H 0.09 1.52 7.82 -2.39 -0.02 1.50 16 Total: -1.00 -75.71 405.75 3.03 -72.68 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.18 Total: 21.59 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 6.64 Total: -6.82 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -4.56 Total: -85.88 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.09 Total: -37.97 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -7.47 SS G_CDS: -1.16 Total: -8.63 kcal Total: -75.71 3.03 -72.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739669351.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.470 kcal (2) G-P(sol) polarization free energy of solvation -75.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds