Wall clock time and date at job start Sat Apr 11 2020 06:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50693 * 120.00329 * 2 1 4 4 C 1.50696 * 119.99349 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47455 * 95.00162 * 4 2 1 6 6 C 1.50703 * 109.47446 * 179.97438 * 5 4 2 7 7 O 1.21276 * 119.99899 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99855 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00297 * 355.00485 * 8 6 5 10 10 C 1.46503 * 119.99436 * 175.00058 * 8 6 5 11 11 C 1.52997 * 109.47050 * 94.85113 * 10 8 6 12 12 H 1.08998 * 112.73695 * 315.33420 * 11 10 8 13 13 C 1.53500 * 113.47097 * 86.15967 * 11 10 8 14 14 C 1.53237 * 83.42753 * 140.67882 * 13 11 10 15 15 N 1.47066 * 113.46483 * 184.59699 * 11 10 8 16 16 C 1.34773 * 136.06278 * 38.05932 * 15 11 10 17 17 O 1.21278 * 119.99818 * 354.99946 * 16 15 11 18 18 C 1.50692 * 120.00508 * 174.99874 * 16 15 11 19 19 S 1.80997 * 109.47394 * 180.02562 * 18 16 15 20 20 C 1.76210 * 100.00164 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99296 * 359.97438 * 20 19 18 22 22 C 1.38790 * 119.99998 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00055 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00201 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46953 * 90.00076 * 24 22 20 26 26 H 1.48503 * 109.47463 * 210.00019 * 24 22 20 27 27 H 1.48494 * 109.47172 * 330.00218 * 24 22 20 28 28 H 1.07998 * 119.99968 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99694 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47359 * 270.00072 * 3 2 1 31 31 H 1.09001 * 109.47151 * 30.00029 * 3 2 1 32 32 H 1.09002 * 109.47279 * 149.99978 * 3 2 1 33 33 H 1.08999 * 109.47872 * 334.99944 * 4 2 1 34 34 H 1.09004 * 109.47003 * 214.99703 * 4 2 1 35 35 H 1.09005 * 109.47094 * 59.99372 * 5 4 2 36 36 H 1.09001 * 109.47141 * 299.99796 * 5 4 2 37 37 H 1.09006 * 109.47137 * 269.99859 * 9 8 6 38 38 H 1.08999 * 109.47174 * 29.99210 * 9 8 6 39 39 H 1.09000 * 109.47283 * 149.99470 * 9 8 6 40 40 H 1.08993 * 109.47702 * 334.84266 * 10 8 6 41 41 H 1.09004 * 109.46350 * 214.84306 * 10 8 6 42 42 H 1.09000 * 114.20161 * 254.43571 * 13 11 10 43 43 H 1.08997 * 114.20660 * 27.06198 * 13 11 10 44 44 H 1.09005 * 113.37891 * 219.29155 * 14 13 11 45 45 H 1.08998 * 113.47496 * 88.93507 * 14 13 11 46 46 H 1.09006 * 109.47150 * 59.99843 * 18 16 15 47 47 H 1.09000 * 109.47538 * 300.00546 * 18 16 15 48 48 H 0.96997 * 119.99898 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 6 3.1812 -2.9883 -1.4382 7 8 3.4058 -3.5593 -0.3921 8 7 3.6059 -3.5207 -2.6013 9 6 3.2412 -2.8898 -3.8722 10 6 4.4322 -4.7304 -2.5945 11 6 3.5390 -5.9593 -2.7760 12 1 2.6415 -5.9226 -2.1585 13 6 3.2576 -6.2988 -4.2463 14 6 3.4154 -7.7433 -3.7597 15 7 4.2675 -7.2328 -2.6752 16 6 5.2761 -7.7171 -1.9238 17 8 5.8559 -6.9897 -1.1457 18 6 5.6833 -9.1624 -2.0504 19 16 7.0542 -9.5043 -0.9191 20 6 7.3192 -11.2114 -1.2665 21 1 6.7055 -11.7149 -1.9989 22 6 8.3158 -11.9090 -0.5984 23 7 8.5134 -13.1844 -0.8575 24 14 9.3767 -11.0382 0.6688 25 1 8.7437 -11.1528 2.0073 26 1 10.7226 -11.6648 0.7024 27 1 9.5071 -9.6046 0.3041 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 2.2453 1.6197 -1.0276 31 1 1.4746 2.0647 0.5138 32 1 3.0160 1.1746 0.5138 33 1 1.4385 -2.0857 0.4334 34 1 2.9741 -1.1992 0.5889 35 1 3.0523 -0.9029 -1.8717 36 1 1.5166 -1.7893 -2.0273 37 1 2.3030 -3.3126 -4.2317 38 1 3.1228 -1.8164 -3.7241 39 1 4.0264 -3.0709 -4.6062 40 1 4.9620 -4.8033 -1.6448 41 1 5.1537 -4.6821 -3.4102 42 1 2.2513 -6.0444 -4.5790 43 1 4.0351 -5.9726 -4.9370 44 1 3.9469 -8.3818 -4.4654 45 1 2.4841 -8.1871 -3.4079 46 1 5.9983 -9.3628 -3.0745 47 1 4.8371 -9.8018 -1.7989 48 1 9.2102 -13.6718 -0.3908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739791020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:47 Heat of formation + Delta-G solvation = -19.033825 kcal Electronic energy + Delta-G solvation = -26784.798830 eV Core-core repulsion = 22967.930979 eV Total energy + Delta-G solvation = -3816.867851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.78339 -39.80112 -37.59703 -36.81004 -35.69102 -32.42405 -31.94401 -30.81573 -29.18922 -28.20329 -27.66113 -26.89101 -25.59623 -25.02282 -22.99454 -22.19561 -19.40065 -18.99211 -18.82392 -17.72264 -17.13670 -16.81607 -16.58837 -16.26489 -15.60396 -15.25094 -15.00142 -14.89001 -14.64194 -14.29197 -14.03847 -13.86944 -13.63573 -13.45970 -13.35306 -13.02273 -12.85745 -12.82102 -12.66223 -12.60660 -12.30689 -12.11243 -12.07836 -11.76521 -11.70467 -11.40804 -11.24444 -11.24208 -10.98771 -10.84119 -10.59156 -10.03376 -9.83286 -9.42152 -9.38436 -9.02555 -8.98476 -8.59655 -8.47595 -6.90009 -6.27413 -3.99026 1.80928 2.39506 2.46955 2.81988 2.97980 3.21459 3.35705 3.52999 3.60405 4.07319 4.17261 4.34901 4.49670 4.53902 4.60476 4.63791 4.71463 4.75027 4.83309 4.86551 4.90174 5.03267 5.06857 5.11723 5.14107 5.14300 5.23828 5.27590 5.30374 5.33019 5.44140 5.51007 5.51270 5.56196 5.61754 5.75492 5.76832 5.82516 5.93145 6.00683 6.03953 6.25542 6.30303 6.49245 7.09273 7.80945 7.95681 7.96467 8.42788 8.46874 9.18876 10.81749 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017628 B = 0.002123 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.027132 B =13184.160522 C =14275.474175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.074 4.074 5 C -0.130 4.130 6 C 0.507 3.493 7 O -0.526 6.526 8 N -0.617 5.617 9 C 0.077 3.923 10 C 0.108 3.892 11 C 0.124 3.876 12 H 0.090 0.910 13 C -0.152 4.152 14 C 0.101 3.899 15 N -0.648 5.648 16 C 0.559 3.441 17 O -0.510 6.510 18 C -0.115 4.115 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.946 26.930 -10.058 33.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.125 4.125 3 C -0.178 4.178 4 C -0.111 4.111 5 C -0.170 4.170 6 C 0.295 3.705 7 O -0.401 6.401 8 N -0.352 5.352 9 C -0.066 4.066 10 C -0.015 4.015 11 C 0.019 3.981 12 H 0.108 0.892 13 C -0.190 4.190 14 C -0.022 4.022 15 N -0.387 5.387 16 C 0.349 3.651 17 O -0.384 6.384 18 C -0.265 4.265 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.642 27.428 -8.146 33.100 hybrid contribution -0.295 -0.950 -0.522 1.123 sum -16.937 26.478 -8.668 32.605 Atomic orbital electron populations 1.23725 0.95233 1.01896 1.02486 1.21780 0.95424 0.95675 0.99580 1.20890 1.00359 0.94490 1.02080 1.20468 1.01062 0.94327 0.95278 1.21650 1.00962 0.94966 0.99397 1.20821 0.79453 0.86908 0.83295 1.90787 1.55743 1.62447 1.31088 1.47828 1.53092 1.27756 1.06475 1.21849 1.01104 0.98186 0.85462 1.21763 0.92246 0.82015 1.05507 1.22964 0.94557 0.85271 0.95263 0.89202 1.23517 1.03005 0.96563 0.95929 1.22834 0.94457 0.96827 0.88073 1.49727 1.34221 1.15718 1.39051 1.19917 0.77916 0.89118 0.78187 1.90721 1.52468 1.59314 1.35895 1.23216 1.03871 0.94119 1.05340 1.84818 1.39288 1.14347 1.53018 1.22310 1.23162 0.92461 1.28897 0.89416 1.24704 0.96077 0.94315 0.96180 1.69940 1.32351 1.07779 1.41635 0.86737 0.80304 0.82382 0.82454 1.19176 1.19925 1.15912 0.88429 0.88507 0.91464 0.91866 0.91677 0.90456 0.90334 0.88825 0.88915 0.92379 0.90949 0.90844 0.87606 0.90107 0.89480 0.88660 0.89984 0.89840 0.88655 0.88664 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.25 13.89 29.01 0.40 -0.84 16 2 C -0.12 -0.85 5.31 -101.07 -0.54 -1.39 16 3 C -0.12 -0.67 10.03 36.00 0.36 -0.31 16 4 C -0.07 -0.62 4.67 -27.89 -0.13 -0.75 16 5 C -0.13 -0.92 4.14 -27.88 -0.12 -1.04 16 6 C 0.51 5.66 7.66 -10.98 -0.08 5.58 16 7 O -0.53 -8.60 15.54 5.56 0.09 -8.52 16 8 N -0.62 -5.75 2.87 -181.57 -0.52 -6.27 16 9 C 0.08 0.36 10.30 59.85 0.62 0.98 16 10 C 0.11 1.31 5.20 -4.04 -0.02 1.29 16 11 C 0.12 1.43 4.29 -72.40 -0.31 1.12 16 12 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 13 C -0.15 -1.11 8.00 -26.35 -0.21 -1.32 16 14 C 0.10 0.97 8.41 -8.65 -0.07 0.90 16 15 N -0.65 -9.31 3.57 -177.62 -0.63 -9.94 16 16 C 0.56 10.83 8.02 -10.99 -0.09 10.75 16 17 O -0.51 -11.83 15.23 5.56 0.08 -11.74 16 18 C -0.11 -2.36 5.99 36.00 0.22 -2.15 16 19 S -0.14 -3.71 18.55 -107.50 -1.99 -5.70 16 20 C -0.52 -15.32 10.04 30.94 0.31 -15.01 16 21 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 22 C 0.10 2.85 5.50 -17.43 -0.10 2.76 16 23 N -0.88 -26.89 13.97 55.49 0.78 -26.12 16 24 Si 0.86 22.27 27.74 -169.99 -4.71 17.55 16 25 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.24 -6.12 6.74 56.52 0.38 -5.74 16 28 H 0.10 0.61 7.99 -52.49 -0.42 0.19 16 29 H 0.10 0.51 8.04 -52.49 -0.42 0.09 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.31 8.06 -51.93 -0.42 -0.11 16 32 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.08 0.75 7.94 -51.93 -0.41 0.33 16 34 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.09 0.50 7.58 -51.93 -0.39 0.11 16 36 H 0.09 0.49 8.04 -51.93 -0.42 0.07 16 37 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 38 H 0.07 0.22 6.44 -51.93 -0.33 -0.11 16 39 H 0.07 0.28 7.94 -51.93 -0.41 -0.13 16 40 H 0.11 1.81 6.23 -51.93 -0.32 1.49 16 41 H 0.08 0.88 7.70 -51.93 -0.40 0.48 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.63 7.94 -51.93 -0.41 0.22 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 47 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 48 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 411.39 15.07 6.20 6.20 Total: -1.00 -37.72 411.39 -8.64 -46.36 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -8.16 Total: -2.38 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 0.24 Total: 0.56 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.38 Total: -42.33 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.17 Total: -20.26 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.55 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -1.99 Total: -5.70 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.72 -8.64 -46.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739791020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.330 kcal (2) G-P(sol) polarization free energy of solvation -37.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds