Wall clock time and date at job start Sat Apr 11 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50693 * 120.00329 * 2 1 4 4 C 1.50696 * 119.99349 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47455 * 95.00162 * 4 2 1 6 6 C 1.50703 * 109.47446 * 179.97438 * 5 4 2 7 7 O 1.21276 * 119.99899 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99855 * 179.97438 * 6 5 4 9 9 C 1.46497 * 120.00297 * 355.00485 * 8 6 5 10 10 C 1.46503 * 119.99436 * 175.00058 * 8 6 5 11 11 C 1.52997 * 109.47050 * 94.85113 * 10 8 6 12 12 H 1.08998 * 112.73695 * 315.33420 * 11 10 8 13 13 C 1.53500 * 113.47097 * 86.15967 * 11 10 8 14 14 C 1.53237 * 83.42753 * 140.67882 * 13 11 10 15 15 N 1.47066 * 113.46483 * 184.59699 * 11 10 8 16 16 C 1.34773 * 136.06278 * 38.05932 * 15 11 10 17 17 O 1.21278 * 119.99818 * 354.99946 * 16 15 11 18 18 C 1.50692 * 120.00508 * 174.99874 * 16 15 11 19 19 S 1.80997 * 109.47394 * 180.02562 * 18 16 15 20 20 C 1.76210 * 100.00164 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99296 * 359.97438 * 20 19 18 22 22 C 1.38790 * 119.99998 * 180.02562 * 20 19 18 23 23 N 1.31635 * 120.00055 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00201 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46953 * 90.00076 * 24 22 20 26 26 H 1.48503 * 109.47463 * 210.00019 * 24 22 20 27 27 H 1.48494 * 109.47172 * 330.00218 * 24 22 20 28 28 H 1.07998 * 119.99968 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99694 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47359 * 270.00072 * 3 2 1 31 31 H 1.09001 * 109.47151 * 30.00029 * 3 2 1 32 32 H 1.09002 * 109.47279 * 149.99978 * 3 2 1 33 33 H 1.08999 * 109.47872 * 334.99944 * 4 2 1 34 34 H 1.09004 * 109.47003 * 214.99703 * 4 2 1 35 35 H 1.09005 * 109.47094 * 59.99372 * 5 4 2 36 36 H 1.09001 * 109.47141 * 299.99796 * 5 4 2 37 37 H 1.09006 * 109.47137 * 269.99859 * 9 8 6 38 38 H 1.08999 * 109.47174 * 29.99210 * 9 8 6 39 39 H 1.09000 * 109.47283 * 149.99470 * 9 8 6 40 40 H 1.08993 * 109.47702 * 334.84266 * 10 8 6 41 41 H 1.09004 * 109.46350 * 214.84306 * 10 8 6 42 42 H 1.09000 * 114.20161 * 254.43571 * 13 11 10 43 43 H 1.08997 * 114.20660 * 27.06198 * 13 11 10 44 44 H 1.09005 * 113.37891 * 219.29155 * 14 13 11 45 45 H 1.08998 * 113.47496 * 88.93507 * 14 13 11 46 46 H 1.09006 * 109.47150 * 59.99843 * 18 16 15 47 47 H 1.09000 * 109.47538 * 300.00546 * 18 16 15 48 48 H 0.96997 * 119.99898 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 6 3.1812 -2.9883 -1.4382 7 8 3.4058 -3.5593 -0.3921 8 7 3.6059 -3.5207 -2.6013 9 6 3.2412 -2.8898 -3.8722 10 6 4.4322 -4.7304 -2.5945 11 6 3.5390 -5.9593 -2.7760 12 1 2.6415 -5.9226 -2.1585 13 6 3.2576 -6.2988 -4.2463 14 6 3.4154 -7.7433 -3.7597 15 7 4.2675 -7.2328 -2.6752 16 6 5.2761 -7.7171 -1.9238 17 8 5.8559 -6.9897 -1.1457 18 6 5.6833 -9.1624 -2.0504 19 16 7.0542 -9.5043 -0.9191 20 6 7.3192 -11.2114 -1.2665 21 1 6.7055 -11.7149 -1.9989 22 6 8.3158 -11.9090 -0.5984 23 7 8.5134 -13.1844 -0.8575 24 14 9.3767 -11.0382 0.6688 25 1 8.7437 -11.1528 2.0073 26 1 10.7226 -11.6648 0.7024 27 1 9.5071 -9.6046 0.3041 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 2.2453 1.6197 -1.0276 31 1 1.4746 2.0647 0.5138 32 1 3.0160 1.1746 0.5138 33 1 1.4385 -2.0857 0.4334 34 1 2.9741 -1.1992 0.5889 35 1 3.0523 -0.9029 -1.8717 36 1 1.5166 -1.7893 -2.0273 37 1 2.3030 -3.3126 -4.2317 38 1 3.1228 -1.8164 -3.7241 39 1 4.0264 -3.0709 -4.6062 40 1 4.9620 -4.8033 -1.6448 41 1 5.1537 -4.6821 -3.4102 42 1 2.2513 -6.0444 -4.5790 43 1 4.0351 -5.9726 -4.9370 44 1 3.9469 -8.3818 -4.4654 45 1 2.4841 -8.1871 -3.4079 46 1 5.9983 -9.3628 -3.0745 47 1 4.8371 -9.8018 -1.7989 48 1 9.2102 -13.6718 -0.3908 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739791020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:46 Heat of formation + Delta-G solvation = -44.455742 kcal Electronic energy + Delta-G solvation = -26785.901207 eV Core-core repulsion = 22967.930979 eV Total energy + Delta-G solvation = -3817.970228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77353 -40.76066 -38.96008 -37.39076 -36.54562 -34.71310 -32.73542 -32.07314 -29.97028 -29.52697 -28.09846 -27.87840 -27.45999 -25.74857 -23.76725 -23.24177 -20.41500 -20.13780 -19.53491 -19.36873 -18.17233 -17.88803 -17.47089 -17.24864 -17.10627 -16.66880 -16.44761 -15.83350 -15.72987 -15.52600 -15.02586 -14.95355 -14.67315 -14.45689 -14.16889 -14.03046 -13.88586 -13.76752 -13.52191 -13.47943 -13.35082 -13.26814 -13.06017 -12.91080 -12.71857 -12.59264 -12.53292 -12.42943 -11.99342 -11.89929 -11.83762 -11.71273 -11.21208 -10.97050 -10.81914 -10.58869 -9.94204 -9.91199 -9.62395 -9.05838 -8.55436 -6.27142 0.89055 1.27761 1.29717 1.37598 1.46071 1.49757 1.59249 1.79237 2.19210 2.22174 2.63633 2.82523 3.26289 3.52478 3.55292 3.86395 3.92824 3.95562 4.01403 4.03598 4.13660 4.22818 4.29576 4.35389 4.39118 4.44041 4.55847 4.59038 4.64529 4.68909 4.72521 4.80178 4.87343 4.92425 4.96605 4.98541 5.03596 5.09974 5.14458 5.18453 5.24870 5.49928 5.67111 5.75589 5.99156 6.06864 6.36352 6.58573 6.89631 7.02634 7.16217 8.56901 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017628 B = 0.002123 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.027132 B =13184.160522 C =14275.474175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 C -0.121 4.121 4 C -0.073 4.073 5 C -0.116 4.116 6 C 0.498 3.502 7 O -0.593 6.593 8 N -0.610 5.610 9 C 0.067 3.933 10 C 0.113 3.887 11 C 0.117 3.883 12 H 0.081 0.919 13 C -0.117 4.117 14 C 0.092 3.908 15 N -0.650 5.650 16 C 0.556 3.444 17 O -0.563 6.563 18 C -0.098 4.098 19 S -0.179 6.179 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.049 3.951 23 N -0.913 5.913 24 Si 0.912 3.088 25 H -0.264 1.264 26 H -0.254 1.254 27 H -0.240 1.240 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.128 0.872 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.949 29.290 -12.912 37.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.131 4.131 3 C -0.177 4.177 4 C -0.111 4.111 5 C -0.155 4.155 6 C 0.288 3.712 7 O -0.473 6.473 8 N -0.343 5.343 9 C -0.074 4.074 10 C -0.012 4.012 11 C 0.013 3.987 12 H 0.099 0.901 13 C -0.155 4.155 14 C -0.029 4.029 15 N -0.387 5.387 16 C 0.345 3.655 17 O -0.441 6.441 18 C -0.249 4.249 19 S 0.048 5.952 20 C -0.676 4.676 21 H 0.081 0.919 22 C -0.157 4.157 23 N -0.551 5.551 24 Si 0.734 3.266 25 H -0.189 1.189 26 H -0.178 1.178 27 H -0.164 1.164 28 H 0.114 0.886 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.146 0.854 43 H 0.129 0.871 44 H 0.112 0.888 45 H 0.119 0.881 46 H 0.131 0.869 47 H 0.123 0.877 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.703 29.801 -11.101 36.893 hybrid contribution 0.154 -1.648 0.246 1.674 sum -18.548 28.152 -10.855 35.418 Atomic orbital electron populations 1.23853 0.95052 1.02534 1.01545 1.21750 0.95613 0.95277 1.00499 1.20908 0.99899 0.93850 1.03087 1.20391 0.99865 0.94860 0.95970 1.21653 1.01908 0.93013 0.98966 1.21636 0.78998 0.87809 0.82781 1.90763 1.58500 1.64425 1.33609 1.47928 1.51728 1.26696 1.07947 1.22242 1.02627 0.99356 0.83168 1.21516 0.92904 0.83933 1.02802 1.23238 0.93343 0.83586 0.98561 0.90106 1.23479 1.05797 0.93636 0.92542 1.23284 0.94174 0.98906 0.86573 1.49844 1.32920 1.17710 1.38269 1.19621 0.79287 0.88142 0.78477 1.90704 1.54874 1.60117 1.38408 1.23149 1.01583 0.95781 1.04361 1.84796 1.42759 1.12097 1.55587 1.22415 1.22837 0.94045 1.28279 0.91851 1.25513 0.97264 0.95001 0.97942 1.70005 1.33324 1.08959 1.42841 0.85900 0.79548 0.81118 0.80000 1.18895 1.17833 1.16408 0.88615 0.87058 0.89920 0.91153 0.92427 0.92565 0.92659 0.86290 0.86027 0.89958 0.88789 0.89498 0.93507 0.88743 0.85405 0.87103 0.88773 0.88101 0.86927 0.87672 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 13.89 67.77 0.94 -1.17 16 2 C -0.13 -1.63 5.31 -16.50 -0.09 -1.72 16 3 C -0.12 -1.13 10.03 71.23 0.71 -0.41 16 4 C -0.07 -1.24 4.67 29.85 0.14 -1.10 16 5 C -0.12 -1.46 4.14 29.85 0.12 -1.33 16 6 C 0.50 11.15 7.66 87.66 0.67 11.82 16 7 O -0.59 -20.99 15.54 -3.02 -0.05 -21.04 16 8 N -0.61 -10.49 2.87 -846.76 -2.43 -12.93 16 9 C 0.07 0.34 10.30 127.77 1.32 1.66 16 10 C 0.11 2.73 5.20 86.38 0.45 3.18 16 11 C 0.12 2.51 4.29 41.79 0.18 2.69 16 12 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 13 C -0.12 -1.17 8.00 30.84 0.25 -0.92 16 14 C 0.09 1.45 8.41 83.09 0.70 2.14 16 15 N -0.65 -18.06 3.57 -834.26 -2.98 -21.04 16 16 C 0.56 21.90 8.02 87.66 0.70 22.61 16 17 O -0.56 -27.41 15.23 -3.02 -0.05 -27.45 16 18 C -0.10 -4.05 5.99 71.23 0.43 -3.63 16 19 S -0.18 -9.62 18.55 -56.49 -1.05 -10.67 16 20 C -0.53 -31.78 10.04 67.95 0.68 -31.10 16 21 H 0.06 3.99 8.03 -2.91 -0.02 3.97 16 22 C 0.05 2.92 5.50 84.85 0.47 3.39 16 23 N -0.91 -56.48 13.97 21.65 0.30 -56.18 16 24 Si 0.91 46.58 27.74 68.60 1.90 48.48 16 25 H -0.26 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.25 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.24 -12.37 6.74 99.48 0.67 -11.70 16 28 H 0.10 1.07 7.99 -2.91 -0.02 1.04 16 29 H 0.11 0.90 8.04 -2.91 -0.02 0.88 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.56 8.06 -2.39 -0.02 0.54 16 32 H 0.06 0.62 8.09 -2.39 -0.02 0.60 16 33 H 0.06 1.17 7.94 -2.39 -0.02 1.15 16 34 H 0.05 1.18 8.05 -2.39 -0.02 1.16 16 35 H 0.12 0.92 7.58 -2.38 -0.02 0.90 16 36 H 0.12 0.85 8.04 -2.39 -0.02 0.83 16 37 H 0.08 0.09 8.14 -2.38 -0.02 0.07 16 38 H 0.09 0.12 6.44 -2.39 -0.02 0.10 16 39 H 0.09 0.27 7.94 -2.39 -0.02 0.25 16 40 H 0.05 1.73 6.23 -2.39 -0.01 1.72 16 41 H 0.09 1.94 7.70 -2.38 -0.02 1.92 16 42 H 0.13 0.40 8.14 -2.39 -0.02 0.39 16 43 H 0.11 0.87 7.94 -2.39 -0.02 0.85 16 44 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 47 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 48 H 0.28 15.86 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -89.79 411.39 4.21 -85.58 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.89 Total: 9.16 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 7.67 Total: 6.08 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -5.11 Total: -90.15 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -0.09 Total: -48.49 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.90 Total: 48.48 kcal Atomic # 16 Polarization: -9.62 SS G_CDS: -1.05 Total: -10.67 kcal Total: -89.79 4.21 -85.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739791020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.123 kcal (2) G-P(sol) polarization free energy of solvation -89.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds