Wall clock time and date at job start Sat Apr 11 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99889 * 2 1 4 4 C 1.50699 * 120.00061 * 180.27553 * 2 1 3 5 5 C 1.53003 * 109.46811 * 94.72600 * 4 2 1 6 6 C 1.50704 * 109.46981 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99733 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00324 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99609 * 359.97438 * 8 6 5 10 10 C 1.46496 * 120.00206 * 179.97438 * 8 6 5 11 11 C 1.52991 * 109.47206 * 95.65135 * 10 8 6 12 12 H 1.08998 * 112.96954 * 67.16390 * 11 10 8 13 13 C 1.53947 * 113.77048 * 295.48233 * 11 10 8 14 14 C 1.53951 * 86.29322 * 222.09243 * 13 11 10 15 15 N 1.47582 * 86.11355 * 23.60753 * 14 13 11 16 16 C 1.34782 * 134.49355 * 155.36404 * 15 14 13 17 17 O 1.21276 * 119.99905 * 175.08263 * 16 15 14 18 18 C 1.50703 * 119.99655 * 355.07527 * 16 15 14 19 19 S 1.81003 * 109.46983 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99891 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00197 * 359.97438 * 20 19 18 22 22 C 1.38793 * 119.99822 * 180.02562 * 20 19 18 23 23 N 1.31637 * 120.00114 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46901 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47467 * 119.99627 * 24 22 20 27 27 H 1.48495 * 109.47126 * 239.99903 * 24 22 20 28 28 H 1.07999 * 120.00171 * 179.71697 * 1 2 3 29 29 H 1.08003 * 120.00130 * 359.72864 * 1 2 3 30 30 H 1.09000 * 109.47015 * 270.27544 * 3 2 1 31 31 H 1.09000 * 109.46744 * 30.27893 * 3 2 1 32 32 H 1.09002 * 109.46862 * 150.27139 * 3 2 1 33 33 H 1.08989 * 109.47322 * 214.72317 * 4 2 1 34 34 H 1.09004 * 109.46936 * 334.72796 * 4 2 1 35 35 H 1.08996 * 109.47150 * 299.99587 * 5 4 2 36 36 H 1.08991 * 109.47361 * 60.00028 * 5 4 2 37 37 H 1.08994 * 109.47349 * 93.87607 * 9 8 6 38 38 H 1.09002 * 109.46779 * 213.87513 * 9 8 6 39 39 H 1.09004 * 109.47265 * 333.87346 * 9 8 6 40 40 H 1.08995 * 109.47083 * 215.65485 * 10 8 6 41 41 H 1.09003 * 109.47085 * 335.65000 * 10 8 6 42 42 H 1.08999 * 113.74418 * 336.43954 * 13 11 10 43 43 H 1.09001 * 113.74226 * 107.64157 * 13 11 10 44 44 H 1.08993 * 113.77135 * 137.90698 * 14 13 11 45 45 H 1.08994 * 113.77017 * 269.20014 * 14 13 11 46 46 H 1.09004 * 109.46999 * 300.00332 * 18 16 15 47 47 H 1.08997 * 109.47186 * 60.00087 * 18 16 15 48 48 H 0.97003 * 119.99747 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0063 5 6 2.4214 -1.6803 -1.4457 6 6 3.1744 -2.9858 -1.4521 7 8 3.4027 -3.5592 -0.4081 8 7 3.5950 -3.5155 -2.6179 9 6 3.3197 -2.8225 -3.8789 10 6 4.3274 -4.7842 -2.6240 11 6 3.3538 -5.9339 -2.8899 12 1 2.9334 -5.9115 -3.8953 13 6 2.3022 -6.1253 -1.7819 14 6 2.5533 -7.6357 -1.9428 15 7 3.8711 -7.2565 -2.4883 16 6 5.0670 -7.8712 -2.5822 17 8 5.9792 -7.3355 -3.1753 18 6 5.2704 -9.2241 -1.9502 19 16 6.9673 -9.7796 -2.2469 20 6 6.9272 -11.3378 -1.4252 21 1 6.0209 -11.6695 -0.9404 22 6 8.0607 -12.1384 -1.4001 23 7 9.1654 -11.7339 -1.9906 24 14 8.0185 -13.7900 -0.5284 25 1 6.6685 -14.0100 0.0501 26 1 8.3219 -14.8708 -1.5005 27 1 9.0310 -13.8024 0.5577 28 1 -0.5400 -0.9353 -0.0046 29 1 -0.5400 0.9353 0.0044 30 1 2.2408 1.6222 -1.0277 31 1 1.4765 2.0635 0.5182 32 1 3.0180 1.1736 0.5096 33 1 2.9766 -1.2003 0.5795 34 1 1.4403 -2.0865 0.4287 35 1 1.5083 -1.7852 -2.0316 36 1 3.0444 -0.8990 -1.8807 37 1 4.1688 -2.1907 -4.1392 38 1 3.1570 -3.5561 -4.6685 39 1 2.4282 -2.2053 -3.7672 40 1 5.0859 -4.7621 -3.4064 41 1 4.8077 -4.9311 -1.6566 42 1 2.6084 -5.7303 -0.8133 43 1 1.2987 -5.8124 -2.0705 44 1 2.6079 -8.1751 -0.9973 45 1 1.8969 -8.1153 -2.6688 46 1 5.0939 -9.1539 -0.8768 47 1 4.5723 -9.9380 -2.3872 48 1 9.9575 -12.2937 -1.9733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001739791022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:49 Heat of formation + Delta-G solvation = -23.483004 kcal Electronic energy + Delta-G solvation = -26842.005957 eV Core-core repulsion = 23024.945176 eV Total energy + Delta-G solvation = -3817.060782 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69892 -39.63201 -37.39738 -36.78555 -35.69675 -32.41140 -31.94775 -30.64606 -29.11822 -28.02485 -27.67163 -26.89755 -25.47034 -25.05566 -23.12482 -21.76882 -19.38291 -18.89182 -18.79553 -17.70515 -17.16863 -16.67224 -16.50206 -16.32003 -15.60371 -15.16705 -15.00412 -14.78782 -14.58554 -14.19380 -14.04783 -13.84690 -13.66638 -13.44889 -13.30199 -13.00765 -12.79969 -12.75197 -12.49116 -12.29216 -12.27890 -12.08814 -11.91119 -11.77350 -11.51965 -11.39614 -11.25619 -11.05575 -11.00245 -10.83124 -10.73620 -10.04880 -9.78934 -9.42538 -9.28678 -9.05909 -9.02350 -8.47523 -8.21137 -6.47986 -6.20080 -3.90334 1.79570 2.37539 2.51269 2.97766 3.11263 3.22953 3.27535 3.32620 3.60764 4.14155 4.22024 4.32857 4.48729 4.59698 4.64769 4.72953 4.77155 4.81215 4.84661 4.96121 5.04200 5.10547 5.14182 5.15214 5.16913 5.24933 5.30077 5.36272 5.43920 5.48696 5.50862 5.55384 5.56899 5.60653 5.65018 5.79713 5.83379 5.92253 6.04290 6.15649 6.18695 6.24409 6.32811 6.47714 7.09914 7.61813 7.88277 7.94311 8.37401 8.58506 9.25371 10.87455 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023137 B = 0.001922 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.884939 B =14563.362524 C =14743.532144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.072 4.072 5 C -0.131 4.131 6 C 0.511 3.489 7 O -0.532 6.532 8 N -0.613 5.613 9 C 0.075 3.925 10 C 0.113 3.887 11 C 0.122 3.878 12 H 0.088 0.912 13 C -0.148 4.148 14 C 0.103 3.897 15 N -0.643 5.643 16 C 0.556 3.444 17 O -0.517 6.517 18 C -0.145 4.145 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.841 24.117 -1.253 31.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.125 4.125 3 C -0.178 4.178 4 C -0.110 4.110 5 C -0.171 4.171 6 C 0.300 3.700 7 O -0.408 6.408 8 N -0.347 5.347 9 C -0.068 4.068 10 C -0.010 4.010 11 C 0.018 3.982 12 H 0.105 0.895 13 C -0.186 4.186 14 C -0.020 4.020 15 N -0.383 5.383 16 C 0.346 3.654 17 O -0.391 6.391 18 C -0.295 4.295 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.942 24.448 -1.639 30.970 hybrid contribution -1.131 -1.782 0.929 2.306 sum -20.073 22.666 -0.710 30.284 Atomic orbital electron populations 1.23723 0.95239 1.01899 1.02499 1.21785 0.95420 0.95706 0.99568 1.20894 1.00339 0.94505 1.02111 1.20456 1.01007 0.94299 0.95215 1.21658 1.01010 0.95086 0.99359 1.20760 0.79181 0.86884 0.83219 1.90721 1.56202 1.62624 1.31241 1.47796 1.57098 1.22934 1.06907 1.21860 1.01404 0.97746 0.85773 1.21567 0.93444 0.80974 1.05022 1.23037 0.92812 0.83969 0.98423 0.89457 1.23663 0.98633 0.95698 1.00569 1.23086 0.82862 0.96935 0.99111 1.50123 1.09281 1.16703 1.62182 1.20071 0.80299 0.86198 0.78881 1.90689 1.40693 1.66024 1.41681 1.23471 1.07594 0.95267 1.03198 1.85362 1.03295 1.21881 1.72884 1.22906 1.00880 1.04106 1.40314 0.90888 1.24994 0.94535 0.98663 0.95422 1.70035 1.01614 1.37419 1.41250 0.86110 0.78275 0.81979 0.79093 1.19613 1.20570 1.20547 0.88421 0.88529 0.91438 0.91881 0.91693 0.90377 0.90442 0.88851 0.88881 0.92238 0.90873 0.90724 0.89437 0.88694 0.87740 0.90593 0.89854 0.89943 0.89297 0.89457 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.15 13.89 29.01 0.40 -0.75 16 2 C -0.12 -0.79 5.31 -101.07 -0.54 -1.32 16 3 C -0.12 -0.63 10.03 36.01 0.36 -0.27 16 4 C -0.07 -0.54 4.66 -27.88 -0.13 -0.67 16 5 C -0.13 -0.85 4.18 -27.88 -0.12 -0.97 16 6 C 0.51 5.18 7.24 -10.98 -0.08 5.10 16 7 O -0.53 -7.49 13.91 5.55 0.08 -7.42 16 8 N -0.61 -5.71 2.78 -181.58 -0.51 -6.22 16 9 C 0.08 0.41 10.33 59.85 0.62 1.03 16 10 C 0.11 1.43 5.01 -4.05 -0.02 1.41 16 11 C 0.12 1.46 4.52 -66.86 -0.30 1.16 16 12 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 13 C -0.15 -1.52 7.25 -25.80 -0.19 -1.71 16 14 C 0.10 1.15 8.61 -2.97 -0.03 1.12 16 15 N -0.64 -9.78 3.49 -171.20 -0.60 -10.38 16 16 C 0.56 11.18 7.94 -10.98 -0.09 11.09 16 17 O -0.52 -12.12 16.15 5.56 0.09 -12.03 16 18 C -0.14 -3.12 5.91 36.01 0.21 -2.91 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.53 -15.56 9.50 30.94 0.29 -15.27 16 21 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.55 13.22 55.49 0.73 -25.82 16 24 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.10 0.55 8.00 -52.49 -0.42 0.13 16 29 H 0.10 0.48 8.04 -52.48 -0.42 0.05 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 8.06 -51.93 -0.42 -0.13 16 32 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.08 0.68 8.05 -51.94 -0.42 0.27 16 34 H 0.08 0.66 7.95 -51.93 -0.41 0.24 16 35 H 0.09 0.45 7.41 -51.93 -0.38 0.06 16 36 H 0.09 0.48 8.11 -51.93 -0.42 0.06 16 37 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.37 8.10 -51.93 -0.42 -0.06 16 39 H 0.07 0.24 6.30 -51.93 -0.33 -0.08 16 40 H 0.09 1.18 8.11 -51.93 -0.42 0.76 16 41 H 0.09 1.51 7.26 -51.93 -0.38 1.13 16 42 H 0.10 1.30 6.55 -51.93 -0.34 0.96 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.82 8.14 -51.91 -0.42 1.40 16 47 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 412.14 15.07 6.21 6.21 Total: -1.00 -36.65 412.14 -9.05 -45.70 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -8.13 Total: -1.96 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 0.31 Total: -0.94 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: -0.37 Total: -42.42 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.17 Total: -19.44 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.65 -9.05 -45.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739791022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.214 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds