Wall clock time and date at job start Sat Apr 11 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99889 * 2 1 4 4 C 1.50699 * 120.00061 * 180.27553 * 2 1 3 5 5 C 1.53003 * 109.46811 * 94.72600 * 4 2 1 6 6 C 1.50704 * 109.46981 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99733 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00324 * 180.02562 * 6 5 4 9 9 C 1.46498 * 119.99609 * 359.97438 * 8 6 5 10 10 C 1.46496 * 120.00206 * 179.97438 * 8 6 5 11 11 C 1.52991 * 109.47206 * 95.65135 * 10 8 6 12 12 H 1.08998 * 112.96954 * 67.16390 * 11 10 8 13 13 C 1.53947 * 113.77048 * 295.48233 * 11 10 8 14 14 C 1.53951 * 86.29322 * 222.09243 * 13 11 10 15 15 N 1.47582 * 86.11355 * 23.60753 * 14 13 11 16 16 C 1.34782 * 134.49355 * 155.36404 * 15 14 13 17 17 O 1.21276 * 119.99905 * 175.08263 * 16 15 14 18 18 C 1.50703 * 119.99655 * 355.07527 * 16 15 14 19 19 S 1.81003 * 109.46983 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99891 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00197 * 359.97438 * 20 19 18 22 22 C 1.38793 * 119.99822 * 180.02562 * 20 19 18 23 23 N 1.31637 * 120.00114 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46901 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47467 * 119.99627 * 24 22 20 27 27 H 1.48495 * 109.47126 * 239.99903 * 24 22 20 28 28 H 1.07999 * 120.00171 * 179.71697 * 1 2 3 29 29 H 1.08003 * 120.00130 * 359.72864 * 1 2 3 30 30 H 1.09000 * 109.47015 * 270.27544 * 3 2 1 31 31 H 1.09000 * 109.46744 * 30.27893 * 3 2 1 32 32 H 1.09002 * 109.46862 * 150.27139 * 3 2 1 33 33 H 1.08989 * 109.47322 * 214.72317 * 4 2 1 34 34 H 1.09004 * 109.46936 * 334.72796 * 4 2 1 35 35 H 1.08996 * 109.47150 * 299.99587 * 5 4 2 36 36 H 1.08991 * 109.47361 * 60.00028 * 5 4 2 37 37 H 1.08994 * 109.47349 * 93.87607 * 9 8 6 38 38 H 1.09002 * 109.46779 * 213.87513 * 9 8 6 39 39 H 1.09004 * 109.47265 * 333.87346 * 9 8 6 40 40 H 1.08995 * 109.47083 * 215.65485 * 10 8 6 41 41 H 1.09003 * 109.47085 * 335.65000 * 10 8 6 42 42 H 1.08999 * 113.74418 * 336.43954 * 13 11 10 43 43 H 1.09001 * 113.74226 * 107.64157 * 13 11 10 44 44 H 1.08993 * 113.77135 * 137.90698 * 14 13 11 45 45 H 1.08994 * 113.77017 * 269.20014 * 14 13 11 46 46 H 1.09004 * 109.46999 * 300.00332 * 18 16 15 47 47 H 1.08997 * 109.47186 * 60.00087 * 18 16 15 48 48 H 0.97003 * 119.99747 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0063 5 6 2.4214 -1.6803 -1.4457 6 6 3.1744 -2.9858 -1.4521 7 8 3.4027 -3.5592 -0.4081 8 7 3.5950 -3.5155 -2.6179 9 6 3.3197 -2.8225 -3.8789 10 6 4.3274 -4.7842 -2.6240 11 6 3.3538 -5.9339 -2.8899 12 1 2.9334 -5.9115 -3.8953 13 6 2.3022 -6.1253 -1.7819 14 6 2.5533 -7.6357 -1.9428 15 7 3.8711 -7.2565 -2.4883 16 6 5.0670 -7.8712 -2.5822 17 8 5.9792 -7.3355 -3.1753 18 6 5.2704 -9.2241 -1.9502 19 16 6.9673 -9.7796 -2.2469 20 6 6.9272 -11.3378 -1.4252 21 1 6.0209 -11.6695 -0.9404 22 6 8.0607 -12.1384 -1.4001 23 7 9.1654 -11.7339 -1.9906 24 14 8.0185 -13.7900 -0.5284 25 1 6.6685 -14.0100 0.0501 26 1 8.3219 -14.8708 -1.5005 27 1 9.0310 -13.8024 0.5577 28 1 -0.5400 -0.9353 -0.0046 29 1 -0.5400 0.9353 0.0044 30 1 2.2408 1.6222 -1.0277 31 1 1.4765 2.0635 0.5182 32 1 3.0180 1.1736 0.5096 33 1 2.9766 -1.2003 0.5795 34 1 1.4403 -2.0865 0.4287 35 1 1.5083 -1.7852 -2.0316 36 1 3.0444 -0.8990 -1.8807 37 1 4.1688 -2.1907 -4.1392 38 1 3.1570 -3.5561 -4.6685 39 1 2.4282 -2.2053 -3.7672 40 1 5.0859 -4.7621 -3.4064 41 1 4.8077 -4.9311 -1.6566 42 1 2.6084 -5.7303 -0.8133 43 1 1.2987 -5.8124 -2.0705 44 1 2.6079 -8.1751 -0.9973 45 1 1.8969 -8.1153 -2.6688 46 1 5.0939 -9.1539 -0.8768 47 1 4.5723 -9.9380 -2.3872 48 1 9.9575 -12.2937 -1.9733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739791022.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:48 Heat of formation + Delta-G solvation = -46.891828 kcal Electronic energy + Delta-G solvation = -26843.021040 eV Core-core repulsion = 23024.945176 eV Total energy + Delta-G solvation = -3818.075864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70642 -40.65535 -38.77741 -37.34454 -36.52431 -34.62173 -32.70105 -31.96732 -30.00211 -29.43516 -28.07401 -27.69724 -27.49148 -25.79723 -23.95367 -22.95657 -20.30194 -20.10614 -19.51519 -19.32545 -18.15114 -17.81405 -17.38623 -17.28577 -16.91923 -16.67940 -16.43408 -15.88595 -15.71628 -15.43732 -15.05353 -14.79463 -14.59008 -14.34535 -14.07723 -13.99672 -13.88694 -13.75461 -13.49134 -13.27261 -13.25419 -13.15502 -12.93845 -12.87863 -12.73262 -12.61901 -12.50494 -12.43368 -11.93522 -11.82176 -11.75509 -11.74737 -11.18863 -10.93316 -10.76766 -10.33504 -9.97403 -9.87771 -9.55769 -8.71619 -8.38104 -6.17091 1.15424 1.33310 1.39213 1.39673 1.52638 1.53174 1.63544 1.77654 2.21573 2.24810 2.95898 3.17497 3.38278 3.53809 3.63083 3.82072 3.98289 3.99943 4.02901 4.07678 4.20369 4.23482 4.30986 4.38148 4.39396 4.40546 4.51159 4.56105 4.62796 4.69259 4.72128 4.78485 4.86884 4.88907 4.95730 4.99177 5.01155 5.13743 5.17884 5.21736 5.28686 5.38232 5.45073 5.79436 6.02435 6.16579 6.37855 6.56770 7.02839 7.07889 7.17882 8.71594 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023137 B = 0.001922 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.884939 B =14563.362524 C =14743.532144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C -0.122 4.122 4 C -0.070 4.070 5 C -0.119 4.119 6 C 0.506 3.494 7 O -0.580 6.580 8 N -0.609 5.609 9 C 0.068 3.932 10 C 0.120 3.880 11 C 0.122 3.878 12 H 0.117 0.883 13 C -0.130 4.130 14 C 0.101 3.899 15 N -0.645 5.645 16 C 0.552 3.448 17 O -0.564 6.564 18 C -0.120 4.120 19 S -0.147 6.147 20 C -0.548 4.548 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.001 2.999 25 H -0.258 1.258 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.352 24.663 -1.691 34.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.132 4.132 3 C -0.179 4.179 4 C -0.108 4.108 5 C -0.159 4.159 6 C 0.296 3.704 7 O -0.460 6.460 8 N -0.342 5.342 9 C -0.073 4.073 10 C -0.004 4.004 11 C 0.018 3.982 12 H 0.135 0.865 13 C -0.167 4.167 14 C -0.020 4.020 15 N -0.383 5.383 16 C 0.341 3.659 17 O -0.443 6.443 18 C -0.271 4.271 19 S 0.080 5.920 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.822 3.178 25 H -0.181 1.181 26 H -0.196 1.196 27 H -0.198 1.198 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.132 0.868 44 H 0.104 0.896 45 H 0.134 0.866 46 H 0.116 0.884 47 H 0.123 0.877 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.527 25.038 -2.095 33.745 hybrid contribution -0.151 -1.816 1.067 2.111 sum -22.678 23.222 -1.028 32.474 Atomic orbital electron populations 1.23854 0.95071 1.02547 1.01550 1.21762 0.95613 0.95380 1.00474 1.20914 0.99964 0.94082 1.02914 1.20376 0.99974 0.94774 0.95640 1.21668 1.01877 0.93138 0.99191 1.21473 0.78741 0.87667 0.82535 1.90708 1.58130 1.64106 1.33034 1.47866 1.56126 1.21811 1.08394 1.22162 1.03057 0.98142 0.83956 1.21226 0.93824 0.83364 1.02014 1.23379 0.92517 0.81735 1.00563 0.86513 1.23487 0.99718 0.94850 0.98686 1.23489 0.80622 0.97850 1.00046 1.50231 1.09080 1.18034 1.60918 1.19764 0.81611 0.85719 0.78815 1.90661 1.42729 1.66933 1.43950 1.23270 1.02938 0.96814 1.04060 1.85514 1.09785 1.23043 1.73662 1.23223 1.01565 1.04202 1.40554 0.90103 1.26156 0.93832 1.03154 0.95991 1.70193 1.02530 1.39307 1.42675 0.84876 0.78952 0.76127 0.77796 1.18123 1.19605 1.19841 0.88288 0.87401 0.90218 0.91293 0.92364 0.92479 0.91848 0.86021 0.86912 0.91704 0.90020 0.87571 0.90930 0.92949 0.90175 0.86814 0.89579 0.86586 0.88401 0.87663 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 13.89 67.78 0.94 -0.90 16 2 C -0.13 -1.44 5.31 -16.49 -0.09 -1.53 16 3 C -0.12 -1.05 10.03 71.24 0.71 -0.34 16 4 C -0.07 -1.00 4.66 29.85 0.14 -0.86 16 5 C -0.12 -1.29 4.18 29.85 0.12 -1.17 16 6 C 0.51 9.89 7.24 87.66 0.63 10.52 16 7 O -0.58 -16.99 13.91 -3.04 -0.04 -17.03 16 8 N -0.61 -10.68 2.78 -846.78 -2.36 -13.03 16 9 C 0.07 0.55 10.33 127.77 1.32 1.87 16 10 C 0.12 3.10 5.01 86.38 0.43 3.53 16 11 C 0.12 2.72 4.52 45.09 0.20 2.92 16 12 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 13 C -0.13 -2.36 7.25 31.26 0.23 -2.14 16 14 C 0.10 1.98 8.61 86.48 0.75 2.73 16 15 N -0.65 -19.14 3.49 -813.95 -2.84 -21.98 16 16 C 0.55 22.68 7.94 87.66 0.70 23.38 16 17 O -0.56 -27.78 16.15 -3.02 -0.05 -27.83 16 18 C -0.12 -5.24 5.91 71.24 0.42 -4.81 16 19 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 20 C -0.55 -32.44 9.50 67.95 0.65 -31.79 16 21 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 22 C 0.01 0.78 5.49 84.85 0.47 1.25 16 23 N -0.91 -57.11 13.22 21.65 0.29 -56.82 16 24 Si 1.00 44.70 29.55 68.60 2.03 46.72 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 28 H 0.10 0.90 8.00 -2.91 -0.02 0.88 16 29 H 0.11 0.78 8.04 -2.91 -0.02 0.76 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.51 8.06 -2.39 -0.02 0.49 16 32 H 0.06 0.58 8.08 -2.39 -0.02 0.56 16 33 H 0.06 1.04 8.05 -2.39 -0.02 1.02 16 34 H 0.06 1.07 7.95 -2.39 -0.02 1.05 16 35 H 0.12 0.67 7.41 -2.39 -0.02 0.65 16 36 H 0.11 0.83 8.11 -2.39 -0.02 0.81 16 37 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.08 0.56 8.10 -2.39 -0.02 0.54 16 39 H 0.11 0.22 6.30 -2.39 -0.02 0.20 16 40 H 0.07 2.06 8.11 -2.39 -0.02 2.04 16 41 H 0.05 1.80 7.26 -2.39 -0.02 1.78 16 42 H 0.08 1.95 6.55 -2.39 -0.02 1.94 16 43 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 45 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.10 4.05 8.14 -2.39 -0.02 4.03 16 47 H 0.11 4.17 8.14 -2.40 -0.02 4.15 16 48 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -85.78 412.14 4.41 -81.36 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.92 Total: 15.68 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 7.62 Total: 2.66 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -4.91 Total: -91.84 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -0.09 Total: -44.86 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -85.78 4.41 -81.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739791022.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.473 kcal (2) G-P(sol) polarization free energy of solvation -85.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds