Wall clock time and date at job start Sat Apr 11 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50705 * 119.99729 * 2 1 4 4 C 1.53001 * 109.47043 * 125.00247 * 3 2 1 5 5 C 1.50703 * 110.43391 * 300.69931 * 4 3 2 6 6 O 1.21278 * 119.99985 * 237.46357 * 5 4 3 7 7 N 1.34779 * 119.99944 * 57.46069 * 5 4 3 8 8 C 1.46499 * 119.99872 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46840 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.46840 * 179.97438 * 9 8 7 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 8 12 12 O 1.21273 * 120.00093 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99944 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47324 * 179.97438 * 13 11 10 15 15 C 1.76198 * 100.00237 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99945 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99810 * 180.02562 * 15 14 13 18 18 N 1.31626 * 120.00234 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47143 * 89.99793 * 19 17 15 21 21 H 1.48497 * 109.47033 * 210.00093 * 19 17 15 22 22 H 1.48500 * 109.46734 * 329.99727 * 19 17 15 23 23 C 1.54892 * 110.59883 * 63.31678 * 4 3 2 24 24 C 1.54895 * 102.74400 * 156.67669 * 23 4 3 25 25 C 1.54262 * 104.19713 * 322.05568 * 24 23 4 26 26 C 1.53871 * 106.59947 * 23.61526 * 25 24 23 27 27 H 1.08006 * 120.00527 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00217 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.00445 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47290 * 5.00056 * 3 2 1 31 31 H 1.09002 * 109.47297 * 244.99849 * 3 2 1 32 32 H 0.97000 * 119.99708 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.47391 * 59.99686 * 8 7 5 34 34 H 1.09001 * 109.46813 * 299.99742 * 8 7 5 35 35 H 1.09001 * 109.47194 * 299.99493 * 9 8 7 36 36 H 1.08992 * 109.47399 * 59.99666 * 9 8 7 37 37 H 0.97005 * 120.00448 * 359.97438 * 10 9 8 38 38 H 1.08998 * 109.47224 * 300.00395 * 13 11 10 39 39 H 1.09002 * 109.47152 * 59.99840 * 13 11 10 40 40 H 0.97007 * 120.00127 * 179.97438 * 18 17 15 41 41 H 1.09001 * 110.75570 * 274.99058 * 23 4 3 42 42 H 1.08999 * 110.75818 * 38.36372 * 23 4 3 43 43 H 1.09002 * 110.48398 * 203.37427 * 24 23 4 44 44 H 1.09001 * 110.48348 * 80.74196 * 24 23 4 45 45 H 1.08993 * 110.03398 * 264.32339 * 25 24 23 46 46 H 1.09001 * 110.03172 * 142.89577 * 25 24 23 47 47 H 1.09001 * 110.02858 * 240.71491 * 26 25 24 48 48 H 1.08994 * 110.03821 * 119.28090 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 6 2.2872 1.1825 2.4813 6 8 2.3856 2.0335 3.3398 7 7 1.5089 0.1020 2.6897 8 6 0.7816 -0.0442 3.9529 9 6 -0.0194 -1.3477 3.9322 10 7 -0.7463 -1.4942 5.1957 11 6 -1.5244 -2.5747 5.4041 12 8 -1.6233 -3.4255 4.5455 13 6 -2.2717 -2.7257 6.7041 14 16 -3.2206 -4.2668 6.6791 15 6 -3.9726 -4.1891 8.2706 16 1 -3.7759 -3.3491 8.9203 17 6 -4.8178 -5.2073 8.6893 18 7 -5.0579 -6.2308 7.8972 19 14 -5.6157 -5.1245 10.3764 20 1 -6.9198 -4.4217 10.2732 21 1 -5.8342 -6.5011 10.8886 22 1 -4.7271 -4.3848 11.3083 23 6 4.1009 0.2187 1.0371 24 6 5.2723 0.7526 1.8985 25 6 5.2749 2.2723 1.6333 26 6 3.8524 2.6414 1.1776 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8499 -0.9352 0.0004 30 1 1.3584 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.4299 -0.5785 2.0029 33 1 0.1020 0.7984 4.0805 34 1 1.4911 -0.0673 4.7801 35 1 -0.7289 -1.3251 3.1050 36 1 0.6605 -2.1900 3.8048 37 1 -0.6676 -0.8135 5.8824 38 1 -1.5617 -2.7491 7.5307 39 1 -2.9512 -1.8832 6.8326 40 1 -5.6483 -6.9426 8.1900 41 1 3.7286 -0.7257 1.4341 42 1 4.4057 0.1082 -0.0035 43 1 6.2147 0.3079 1.5786 44 1 5.0928 0.5498 2.9543 45 1 5.9926 2.5133 0.8492 46 1 5.5255 2.8104 2.5476 47 1 3.8797 3.0615 0.1722 48 1 3.4125 3.3586 1.8706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001740481824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:01 Heat of formation + Delta-G solvation = -73.624802 kcal Electronic energy + Delta-G solvation = -26771.803978 eV Core-core repulsion = 22952.568885 eV Total energy + Delta-G solvation = -3819.235093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04504 -39.25759 -37.74696 -36.14086 -35.12381 -33.72324 -32.44331 -30.84321 -30.14825 -29.15387 -27.91949 -25.57381 -25.46425 -23.54574 -22.34032 -21.10759 -20.43207 -20.06612 -19.67199 -17.89791 -17.17428 -16.64893 -16.32910 -16.13815 -15.86374 -15.55369 -15.43996 -14.99952 -14.81478 -14.64531 -14.14678 -13.94410 -13.87215 -13.74074 -13.51677 -13.18992 -12.91799 -12.58077 -12.36119 -12.21053 -11.98965 -11.83956 -11.67276 -11.55069 -11.46841 -11.18679 -11.07363 -11.04736 -11.03877 -10.79616 -10.77494 -10.06942 -9.83587 -9.76479 -9.48940 -9.31886 -9.09067 -8.99902 -8.26369 -6.52148 -6.23190 -3.93997 1.76984 2.37816 2.61932 3.02636 3.13477 3.21743 3.28207 3.34971 3.75306 3.94461 4.11756 4.19000 4.29949 4.42764 4.54014 4.59885 4.70815 4.82844 4.85040 4.96772 5.06043 5.09929 5.11374 5.12169 5.20004 5.27111 5.30789 5.40272 5.46211 5.54337 5.55686 5.58112 5.63383 5.63874 5.76322 5.80412 5.82113 5.86557 6.00309 6.09944 6.11944 6.17694 6.27933 6.48774 7.18571 7.58108 7.60647 7.94655 8.33888 8.52613 9.22300 10.84204 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026160 B = 0.001763 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.080921 B =15882.476253 C =16359.060193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.180 4.180 3 C -0.078 4.078 4 C -0.079 4.079 5 C 0.531 3.469 6 O -0.538 6.538 7 N -0.724 5.724 8 C 0.107 3.893 9 C 0.112 3.888 10 N -0.736 5.736 11 C 0.534 3.466 12 O -0.516 6.516 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.111 4.111 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.109 4.109 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.403 0.597 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.401 0.599 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.268 0.732 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.524 17.453 -16.983 31.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.198 4.198 3 C -0.115 4.115 4 C -0.082 4.082 5 C 0.317 3.683 6 O -0.414 6.414 7 N -0.380 5.380 8 C -0.018 4.018 9 C -0.013 4.013 10 N -0.392 5.392 11 C 0.320 3.680 12 O -0.390 6.390 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.684 4.684 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.148 4.148 24 C -0.165 4.165 25 C -0.159 4.159 26 C -0.146 4.146 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.242 0.758 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.235 0.765 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.329 16.456 -17.818 31.014 hybrid contribution -0.491 0.954 2.105 2.362 sum 18.838 17.410 -15.713 30.081 Atomic orbital electron populations 1.24051 0.95880 1.02628 0.98365 1.22957 0.96245 0.98534 1.02032 1.20787 0.97597 0.96035 0.97109 1.21657 0.95555 0.98495 0.92484 1.20293 0.78485 0.80943 0.88594 1.90683 1.63624 1.41446 1.45651 1.46160 1.48148 1.24699 1.18950 1.21451 0.95709 0.97544 0.87046 1.21305 0.95557 0.96502 0.87956 1.45814 1.49670 1.25204 1.18509 1.20323 0.78238 0.80451 0.88945 1.90702 1.62288 1.40647 1.45364 1.23532 1.02703 1.07644 0.96535 1.85383 1.55517 1.19012 1.23429 1.22866 1.33102 1.10508 1.01917 0.90877 1.24994 0.95789 0.94500 0.98308 1.70015 1.35021 1.09117 1.36135 0.86162 0.79443 0.77610 0.82258 1.20262 1.20743 1.19679 1.22620 0.94319 0.96691 1.01210 1.22387 0.98289 0.95714 1.00109 1.22081 0.96548 0.95949 1.01305 1.22149 0.94625 0.95770 1.02106 0.88378 0.87750 0.86704 0.90855 0.89584 0.75767 0.90749 0.90794 0.90990 0.91112 0.76495 0.89072 0.89074 0.92171 0.91139 0.89980 0.91248 0.91592 0.91779 0.91583 0.91082 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 13.86 29.02 0.40 -0.66 16 2 C -0.18 -0.98 5.98 -36.02 -0.22 -1.20 16 3 C -0.08 -0.43 4.61 -27.88 -0.13 -0.56 16 4 C -0.08 -0.54 0.57 -154.00 -0.09 -0.63 16 5 C 0.53 5.19 6.28 -10.98 -0.07 5.12 16 6 O -0.54 -7.22 15.44 5.56 0.09 -7.14 16 7 N -0.72 -6.12 4.79 -60.29 -0.29 -6.41 16 8 C 0.11 0.98 5.79 -4.04 -0.02 0.96 16 9 C 0.11 1.20 5.79 -4.04 -0.02 1.17 16 10 N -0.74 -9.35 5.56 -60.30 -0.33 -9.68 16 11 C 0.53 9.65 7.85 -10.98 -0.09 9.57 16 12 O -0.52 -11.34 15.86 5.56 0.09 -11.26 16 13 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 14 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 15 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 19 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.11 -0.63 5.07 -24.73 -0.13 -0.75 16 24 C -0.13 -0.83 6.61 -25.07 -0.17 -1.00 16 25 C -0.12 -0.80 6.80 -25.62 -0.17 -0.98 16 26 C -0.11 -0.77 5.73 -25.61 -0.15 -0.91 16 27 H 0.10 0.62 7.84 -52.48 -0.41 0.21 16 28 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 29 H 0.12 0.52 7.58 -52.49 -0.40 0.12 16 30 H 0.07 0.45 7.79 -51.93 -0.40 0.04 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.40 2.81 5.15 -40.82 -0.21 2.60 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 3.99 8.47 -40.82 -0.35 3.64 16 38 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 39 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.07 0.39 7.74 -51.93 -0.40 -0.01 16 42 H 0.08 0.35 8.06 -51.93 -0.42 -0.07 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.38 7.84 -51.93 -0.41 -0.03 16 48 H 0.08 0.76 6.88 -51.93 -0.36 0.41 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -35.59 403.49 -9.27 -44.86 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.97 Total: 1.92 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.42 Total: -5.57 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.11 Total: -41.38 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.17 Total: -18.39 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.59 -9.27 -44.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740481824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.765 kcal (2) G-P(sol) polarization free energy of solvation -35.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds