Wall clock time and date at job start Sat Apr 11 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50705 * 119.99729 * 2 1 4 4 C 1.53001 * 109.47043 * 125.00247 * 3 2 1 5 5 C 1.50703 * 110.43391 * 300.69931 * 4 3 2 6 6 O 1.21278 * 119.99985 * 237.46357 * 5 4 3 7 7 N 1.34779 * 119.99944 * 57.46069 * 5 4 3 8 8 C 1.46499 * 119.99872 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46840 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.46840 * 179.97438 * 9 8 7 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 8 12 12 O 1.21273 * 120.00093 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99944 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47324 * 179.97438 * 13 11 10 15 15 C 1.76198 * 100.00237 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99945 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99810 * 180.02562 * 15 14 13 18 18 N 1.31626 * 120.00234 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47143 * 89.99793 * 19 17 15 21 21 H 1.48497 * 109.47033 * 210.00093 * 19 17 15 22 22 H 1.48500 * 109.46734 * 329.99727 * 19 17 15 23 23 C 1.54892 * 110.59883 * 63.31678 * 4 3 2 24 24 C 1.54895 * 102.74400 * 156.67669 * 23 4 3 25 25 C 1.54262 * 104.19713 * 322.05568 * 24 23 4 26 26 C 1.53871 * 106.59947 * 23.61526 * 25 24 23 27 27 H 1.08006 * 120.00527 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00217 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.00445 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47290 * 5.00056 * 3 2 1 31 31 H 1.09002 * 109.47297 * 244.99849 * 3 2 1 32 32 H 0.97000 * 119.99708 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.47391 * 59.99686 * 8 7 5 34 34 H 1.09001 * 109.46813 * 299.99742 * 8 7 5 35 35 H 1.09001 * 109.47194 * 299.99493 * 9 8 7 36 36 H 1.08992 * 109.47399 * 59.99666 * 9 8 7 37 37 H 0.97005 * 120.00448 * 359.97438 * 10 9 8 38 38 H 1.08998 * 109.47224 * 300.00395 * 13 11 10 39 39 H 1.09002 * 109.47152 * 59.99840 * 13 11 10 40 40 H 0.97007 * 120.00127 * 179.97438 * 18 17 15 41 41 H 1.09001 * 110.75570 * 274.99058 * 23 4 3 42 42 H 1.08999 * 110.75818 * 38.36372 * 23 4 3 43 43 H 1.09002 * 110.48398 * 203.37427 * 24 23 4 44 44 H 1.09001 * 110.48348 * 80.74196 * 24 23 4 45 45 H 1.08993 * 110.03398 * 264.32339 * 25 24 23 46 46 H 1.09001 * 110.03172 * 142.89577 * 25 24 23 47 47 H 1.09001 * 110.02858 * 240.71491 * 26 25 24 48 48 H 1.08994 * 110.03821 * 119.28090 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 6 2.2872 1.1825 2.4813 6 8 2.3856 2.0335 3.3398 7 7 1.5089 0.1020 2.6897 8 6 0.7816 -0.0442 3.9529 9 6 -0.0194 -1.3477 3.9322 10 7 -0.7463 -1.4942 5.1957 11 6 -1.5244 -2.5747 5.4041 12 8 -1.6233 -3.4255 4.5455 13 6 -2.2717 -2.7257 6.7041 14 16 -3.2206 -4.2668 6.6791 15 6 -3.9726 -4.1891 8.2706 16 1 -3.7759 -3.3491 8.9203 17 6 -4.8178 -5.2073 8.6893 18 7 -5.0579 -6.2308 7.8972 19 14 -5.6157 -5.1245 10.3764 20 1 -6.9198 -4.4217 10.2732 21 1 -5.8342 -6.5011 10.8886 22 1 -4.7271 -4.3848 11.3083 23 6 4.1009 0.2187 1.0371 24 6 5.2723 0.7526 1.8985 25 6 5.2749 2.2723 1.6333 26 6 3.8524 2.6414 1.1776 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8499 -0.9352 0.0004 30 1 1.3584 2.1317 0.0896 31 1 2.6212 1.4027 -0.9314 32 1 1.4299 -0.5785 2.0029 33 1 0.1020 0.7984 4.0805 34 1 1.4911 -0.0673 4.7801 35 1 -0.7289 -1.3251 3.1050 36 1 0.6605 -2.1900 3.8048 37 1 -0.6676 -0.8135 5.8824 38 1 -1.5617 -2.7491 7.5307 39 1 -2.9512 -1.8832 6.8326 40 1 -5.6483 -6.9426 8.1900 41 1 3.7286 -0.7257 1.4341 42 1 4.4057 0.1082 -0.0035 43 1 6.2147 0.3079 1.5786 44 1 5.0928 0.5498 2.9543 45 1 5.9926 2.5133 0.8492 46 1 5.5255 2.8104 2.5476 47 1 3.8797 3.0615 0.1722 48 1 3.4125 3.3586 1.8706 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001740481824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:00 Heat of formation + Delta-G solvation = -97.753227 kcal Electronic energy + Delta-G solvation = -26772.850265 eV Core-core repulsion = 22952.568885 eV Total energy + Delta-G solvation = -3820.281380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72855 -40.63737 -38.43727 -37.05845 -35.83827 -34.68327 -34.57835 -31.76458 -31.09008 -29.75885 -28.99256 -27.64454 -26.04100 -24.39533 -23.07484 -21.92549 -21.49200 -20.58089 -20.36028 -19.83411 -17.98583 -17.80554 -17.18593 -17.15708 -16.87974 -16.81516 -16.61201 -16.11424 -15.87989 -15.71864 -15.44682 -14.85655 -14.73279 -14.55549 -14.41410 -14.32830 -14.07633 -13.69964 -13.38277 -13.16653 -12.94209 -12.91732 -12.83161 -12.64194 -12.59441 -12.37226 -12.07974 -11.94876 -11.73788 -11.67890 -11.52711 -11.32050 -11.14452 -11.08335 -10.77367 -10.32935 -10.28291 -10.21706 -10.01467 -8.66421 -8.34908 -6.12623 1.23564 1.30020 1.42349 1.45091 1.55755 1.57403 1.63565 1.91374 2.27068 2.56448 2.99327 3.31701 3.42742 3.56027 3.61560 3.76200 3.96792 3.98838 4.01318 4.11534 4.24742 4.30306 4.33244 4.35323 4.49661 4.51843 4.57139 4.63841 4.77406 4.78196 4.81493 4.85697 4.95834 5.01481 5.07383 5.09837 5.16194 5.24897 5.29467 5.31802 5.39302 5.42226 5.50746 5.72712 5.82960 6.19849 6.40601 6.48927 7.06700 7.17417 7.20707 8.74173 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026160 B = 0.001763 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.080921 B =15882.476253 C =16359.060193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.174 4.174 3 C -0.075 4.075 4 C -0.075 4.075 5 C 0.526 3.474 6 O -0.579 6.579 7 N -0.716 5.716 8 C 0.116 3.884 9 C 0.117 3.883 10 N -0.712 5.712 11 C 0.538 3.462 12 O -0.561 6.561 13 C -0.131 4.131 14 S -0.148 6.148 15 C -0.547 4.547 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.910 5.910 19 Si 0.998 3.002 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.259 1.259 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.122 4.122 26 C -0.110 4.110 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.130 0.870 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.412 0.588 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.418 0.582 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.271 0.729 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.043 0.957 45 H 0.083 0.917 46 H 0.049 0.951 47 H 0.092 0.908 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.609 18.581 -17.209 32.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.192 4.192 3 C -0.112 4.112 4 C -0.078 4.078 5 C 0.314 3.686 6 O -0.459 6.459 7 N -0.372 5.372 8 C -0.009 4.009 9 C -0.007 4.007 10 N -0.367 5.367 11 C 0.324 3.676 12 O -0.438 6.438 13 C -0.283 4.283 14 S 0.079 5.921 15 C -0.695 4.695 16 H 0.101 0.899 17 C -0.191 4.191 18 N -0.547 5.547 19 Si 0.819 3.181 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.183 1.183 23 C -0.144 4.144 24 C -0.167 4.167 25 C -0.159 4.159 26 C -0.148 4.148 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.147 0.853 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.252 0.748 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.255 0.745 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.067 0.933 47 H 0.111 0.889 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 20.439 17.620 -18.053 32.468 hybrid contribution -0.734 0.710 2.120 2.353 sum 19.706 18.330 -15.933 31.276 Atomic orbital electron populations 1.24074 0.96341 1.02409 0.99428 1.23099 0.96026 0.99135 1.00975 1.20801 0.97320 0.95740 0.97323 1.21670 0.95831 0.99051 0.91232 1.20886 0.78168 0.80322 0.89217 1.90667 1.65063 1.42892 1.47256 1.46126 1.47554 1.24676 1.18817 1.21291 0.95518 0.96483 0.87558 1.21353 0.95411 0.97269 0.86703 1.45524 1.47803 1.23733 1.19632 1.20003 0.78644 0.81182 0.87820 1.90693 1.64106 1.42607 1.46432 1.23380 1.02606 1.03824 0.98447 1.85531 1.57563 1.24770 1.24242 1.23209 1.33254 1.10972 1.02051 0.89925 1.26112 0.96299 0.93913 1.02815 1.70176 1.35951 1.10071 1.38479 0.84965 0.78519 0.77888 0.76685 1.19346 1.20289 1.18270 1.22671 0.93227 0.96037 1.02445 1.22400 0.99513 0.95790 0.99037 1.22097 0.96755 0.95899 1.01189 1.22165 0.94657 0.95351 1.02581 0.88867 0.87899 0.85267 0.91658 0.87334 0.74756 0.90802 0.90806 0.90952 0.91058 0.74516 0.87113 0.87099 0.91986 0.90900 0.87548 0.89743 0.93845 0.89875 0.93254 0.88949 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 13.86 67.79 0.94 -1.14 16 2 C -0.17 -1.55 5.98 25.66 0.15 -1.40 16 3 C -0.07 -0.66 4.61 29.85 0.14 -0.52 16 4 C -0.07 -0.91 0.57 -51.85 -0.03 -0.94 16 5 C 0.53 9.94 6.28 87.66 0.55 10.49 16 6 O -0.58 -15.73 15.44 -3.02 -0.05 -15.78 16 7 N -0.72 -11.27 4.79 -463.05 -2.22 -13.49 16 8 C 0.12 1.99 5.79 86.38 0.50 2.49 16 9 C 0.12 2.33 5.79 86.38 0.50 2.83 16 10 N -0.71 -16.83 5.56 -463.07 -2.57 -19.40 16 11 C 0.54 18.96 7.85 87.66 0.69 19.65 16 12 O -0.56 -24.79 15.86 -3.01 -0.05 -24.84 16 13 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 14 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 15 C -0.55 -31.02 9.50 67.95 0.65 -30.37 16 16 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 17 C 0.01 0.76 5.49 84.86 0.47 1.23 16 18 N -0.91 -55.58 13.22 21.65 0.29 -55.29 16 19 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 23 C -0.11 -0.94 5.07 31.89 0.16 -0.78 16 24 C -0.13 -1.50 6.61 31.67 0.21 -1.30 16 25 C -0.12 -1.47 6.80 31.32 0.21 -1.26 16 26 C -0.11 -1.42 5.73 31.32 0.18 -1.25 16 27 H 0.09 1.12 7.84 -2.91 -0.02 1.10 16 28 H 0.10 1.18 8.06 -2.91 -0.02 1.16 16 29 H 0.13 0.79 7.58 -2.91 -0.02 0.77 16 30 H 0.06 0.70 7.79 -2.39 -0.02 0.68 16 31 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.41 5.07 5.15 -92.71 -0.48 4.60 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.42 7.28 8.47 -92.70 -0.79 6.50 16 38 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 39 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 40 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 41 H 0.07 0.63 7.74 -2.39 -0.02 0.61 16 42 H 0.11 0.49 8.06 -2.39 -0.02 0.47 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.09 0.78 7.84 -2.39 -0.02 0.76 16 48 H 0.06 1.06 6.88 -2.39 -0.02 1.04 16 Total: -1.00 -79.64 403.49 1.71 -77.93 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -0.31 Total: 21.57 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 5.75 Total: -6.88 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -4.50 Total: -88.18 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -0.09 Total: -40.62 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -79.64 1.71 -77.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740481824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.824 kcal (2) G-P(sol) polarization free energy of solvation -79.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds