Wall clock time and date at job start Sat Apr 11 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47354 * 2 1 4 4 C 1.52995 * 109.47354 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47354 * 174.86830 * 4 3 2 6 6 C 1.50699 * 115.55022 * 65.20525 * 5 4 3 7 7 O 1.21275 * 120.00443 * 245.81560 * 6 5 4 8 8 N 1.34778 * 119.99499 * 65.81310 * 6 5 4 9 9 C 1.47066 * 136.06114 * 354.63096 * 8 6 5 10 10 C 1.53755 * 87.89014 * 152.95981 * 9 8 6 11 11 N 1.46495 * 114.08752 * 139.77949 * 10 9 8 12 12 C 1.34776 * 120.00401 * 111.56006 * 11 10 9 13 13 O 1.21284 * 119.99745 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00366 * 180.02562 * 12 11 10 15 15 S 1.81004 * 109.46903 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99936 * 179.97438 * 15 14 12 17 17 H 1.08008 * 119.99592 * 0.02562 * 16 15 14 18 18 C 1.38790 * 120.00450 * 179.97438 * 16 15 14 19 19 N 1.31638 * 119.99961 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00600 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47237 * 59.99845 * 20 18 16 22 22 H 1.48501 * 109.47790 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46956 * 300.00373 * 20 18 16 24 24 C 1.47072 * 136.05642 * 174.99292 * 8 6 5 25 25 C 1.52998 * 117.49858 * 279.54048 * 5 4 3 26 26 C 1.52999 * 117.50220 * 210.88057 * 5 4 3 27 27 H 1.08999 * 109.46990 * 300.00124 * 1 2 3 28 28 H 1.09000 * 109.47565 * 59.99796 * 1 2 3 29 29 H 1.08997 * 109.47321 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47234 * 240.00370 * 2 1 3 31 31 H 1.09001 * 109.47115 * 119.99578 * 2 1 3 32 32 H 1.09000 * 109.46951 * 300.00580 * 3 2 1 33 33 H 1.08999 * 109.47173 * 59.99988 * 3 2 1 34 34 H 1.09000 * 109.47356 * 294.87168 * 4 3 2 35 35 H 1.09001 * 109.47193 * 54.87330 * 4 3 2 36 36 H 1.09005 * 113.46221 * 267.68875 * 9 8 6 37 37 H 1.08996 * 113.47111 * 38.12724 * 9 8 6 38 38 H 1.09003 * 114.39025 * 272.67367 * 10 9 8 39 39 H 0.97009 * 120.00226 * 291.56013 * 11 10 9 40 40 H 1.08999 * 109.46584 * 299.99763 * 14 12 11 41 41 H 1.08999 * 109.47069 * 60.00319 * 14 12 11 42 42 H 0.96999 * 120.00153 * 179.97438 * 19 18 16 43 43 H 1.08999 * 113.46479 * 321.86919 * 24 8 6 44 44 H 1.08995 * 113.46492 * 92.24787 * 24 8 6 45 45 H 1.09001 * 117.50396 * 359.97438 * 25 5 4 46 46 H 1.09007 * 117.50215 * 145.01560 * 25 5 4 47 47 H 1.08994 * 117.50077 * 214.97840 * 26 5 4 48 48 H 1.09006 * 117.49572 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8792 -0.1284 6 6 3.7587 3.7894 1.0289 7 8 3.0125 4.7321 0.8699 8 7 4.3007 3.5558 2.2406 9 6 5.1380 2.5068 2.8417 10 6 5.6645 3.5681 3.8218 11 7 5.8272 3.0852 5.1953 12 6 7.0609 2.9529 5.7215 13 8 8.0365 3.2333 5.0578 14 6 7.2282 2.4556 7.1342 15 16 8.9897 2.3877 7.5452 16 6 8.8948 1.7926 9.2009 17 1 7.9325 1.5898 9.6476 18 6 10.0566 1.5834 9.9309 19 7 11.2294 1.8301 9.3864 20 14 9.9561 0.9519 11.6860 21 1 9.2817 -0.3711 11.6982 22 1 11.3262 0.8148 12.2421 23 1 9.1802 1.9105 12.5133 24 6 4.3097 4.2345 3.5453 25 6 4.1041 3.4973 -1.5277 26 6 5.4140 3.0935 -0.8464 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.9330 1.0104 0.9332 35 1 3.9337 0.8511 -0.8396 36 1 4.5633 1.7167 3.3251 37 1 5.9015 2.1206 2.1665 38 1 6.5228 4.1319 3.4564 39 1 5.0469 2.8606 5.7261 40 1 6.7205 3.1334 7.8204 41 1 6.7963 1.4587 7.2220 42 1 12.0413 1.6843 9.8967 43 1 4.3676 5.3203 3.4693 44 1 3.5162 3.9006 4.2137 45 1 3.7569 2.8804 -2.3566 46 1 3.8878 4.5625 -1.6113 47 1 6.0590 3.8930 -0.4820 48 1 5.9284 2.2108 -1.2266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745823528.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:24 Heat of formation + Delta-G solvation = -26.577641 kcal Electronic energy + Delta-G solvation = -26582.880294 eV Core-core repulsion = 22765.685319 eV Total energy + Delta-G solvation = -3817.194975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08053 -39.58613 -38.33607 -37.07571 -35.28385 -33.79865 -32.46483 -30.53992 -30.04871 -28.43027 -26.48392 -25.53598 -24.99709 -23.35922 -22.86335 -21.44528 -21.15691 -20.65097 -18.81457 -17.89020 -17.18247 -16.85644 -16.57122 -16.29533 -15.70308 -15.59373 -15.02477 -14.83943 -14.55693 -14.39260 -14.07738 -13.93083 -13.59441 -13.48482 -13.29396 -13.17404 -13.01628 -12.57876 -12.52094 -12.43890 -12.06331 -11.92187 -11.90469 -11.76040 -11.43646 -11.31547 -11.08753 -11.06639 -10.97357 -10.80739 -10.71394 -10.35492 -10.04164 -9.86972 -9.53611 -9.15435 -9.09114 -9.01712 -8.29858 -6.55038 -6.25316 -3.96609 2.23982 2.31768 2.89062 3.00589 3.20967 3.25375 3.28405 3.30118 3.64022 3.93141 4.11932 4.16674 4.19568 4.38260 4.48204 4.57401 4.62706 4.70918 4.78835 4.81699 5.00420 5.05322 5.06963 5.09951 5.17043 5.19478 5.25963 5.26855 5.33633 5.37949 5.44762 5.50427 5.51963 5.54774 5.60509 5.66426 5.75046 5.78443 5.80368 5.82452 5.90091 5.98652 6.06793 6.42072 7.34380 7.52946 7.55936 7.84933 8.31126 8.44767 9.20004 10.81968 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017915 B = 0.001899 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.539514 B =14744.503059 C =15405.639555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.076 4.076 5 C -0.154 4.154 6 C 0.586 3.414 7 O -0.536 6.536 8 N -0.639 5.639 9 C 0.084 3.916 10 C 0.118 3.882 11 N -0.726 5.726 12 C 0.536 3.464 13 O -0.512 6.512 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.094 3.906 25 C -0.143 4.143 26 C -0.157 4.157 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.133 0.867 39 H 0.402 0.598 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.269 0.731 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.060 -1.740 -19.370 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.113 4.113 5 C -0.157 4.157 6 C 0.376 3.624 7 O -0.412 6.412 8 N -0.375 5.375 9 C -0.041 4.041 10 C 0.011 3.989 11 N -0.380 5.380 12 C 0.323 3.677 13 O -0.385 6.385 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.685 4.685 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.029 4.029 25 C -0.181 4.181 26 C -0.194 4.194 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.150 0.850 39 H 0.237 0.763 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.714 -0.709 -20.757 27.297 hybrid contribution -1.647 -0.919 2.261 2.945 sum -19.360 -1.629 -18.496 26.825 Atomic orbital electron populations 1.21767 0.95818 1.01561 1.01896 1.21527 0.96008 0.96591 1.02024 1.21584 0.94561 0.96835 1.02592 1.21121 0.95891 0.91377 1.02932 1.21382 1.04466 0.96999 0.92838 1.19008 0.78178 0.84297 0.80947 1.90712 1.35614 1.31641 1.83226 1.49181 1.52581 1.27027 1.08662 1.23700 0.93042 0.92856 0.94504 1.22688 0.98069 0.95450 0.82694 1.45837 1.08988 1.69436 1.13762 1.20398 0.82274 0.76474 0.88585 1.90717 1.38282 1.47754 1.61766 1.23543 1.08589 1.03819 0.94554 1.85413 0.94932 1.86640 1.16252 1.22817 0.95556 1.51390 0.98742 0.90931 1.24993 0.94512 0.95049 0.99014 1.70004 0.97516 1.45419 1.37300 0.86222 0.77456 0.79299 0.82508 1.19928 1.20809 1.19929 1.23368 0.96589 0.99883 0.83097 1.23021 0.99941 1.02194 0.92906 1.23135 0.90012 1.03993 1.02240 0.92774 0.92747 0.92750 0.91976 0.91999 0.91553 0.92213 0.91132 0.90660 0.89229 0.89478 0.84954 0.76310 0.89013 0.89023 0.92088 0.89582 0.89361 0.87807 0.87882 0.88236 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.78 5.93 -26.73 -0.16 -0.94 16 3 C -0.12 -0.88 5.02 -26.73 -0.13 -1.01 16 4 C -0.08 -0.53 5.09 -26.73 -0.14 -0.67 16 5 C -0.15 -1.34 1.73 -155.66 -0.27 -1.61 16 6 C 0.59 6.79 6.82 -10.99 -0.07 6.72 16 7 O -0.54 -8.16 17.48 5.56 0.10 -8.06 16 8 N -0.64 -6.36 3.69 -185.08 -0.68 -7.04 16 9 C 0.08 0.71 7.41 -8.38 -0.06 0.65 16 10 C 0.12 1.18 4.62 -67.68 -0.31 0.87 16 11 N -0.73 -7.98 5.38 -53.49 -0.29 -8.26 16 12 C 0.54 8.89 7.85 -10.99 -0.09 8.80 16 13 O -0.51 -10.60 15.46 5.55 0.09 -10.52 16 14 C -0.15 -2.86 6.16 36.01 0.22 -2.63 16 15 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 16 C -0.54 -14.82 9.50 30.94 0.29 -14.52 16 17 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 19 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 20 Si 0.92 20.92 29.55 -169.99 -5.02 15.89 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C 0.09 0.84 8.38 -8.51 -0.07 0.77 16 25 C -0.14 -1.12 9.78 -26.70 -0.26 -1.38 16 26 C -0.16 -1.17 9.93 -26.69 -0.26 -1.43 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.54 7.87 -51.93 -0.41 0.14 16 34 H 0.07 0.49 7.28 -51.93 -0.38 0.11 16 35 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.13 1.58 7.46 -51.93 -0.39 1.19 16 39 H 0.40 3.19 8.76 -40.82 -0.36 2.83 16 40 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 41 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.63 8.13 -51.93 -0.42 0.21 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.93 8.00 -51.92 -0.42 0.52 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 415.99 15.07 6.27 6.27 Total: -1.00 -35.12 415.99 -10.32 -45.44 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.25 Total: -0.10 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.04 Total: -5.01 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.24 Total: -40.17 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.18 Total: -18.58 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.12 -10.32 -45.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745823528.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.859 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds