Wall clock time and date at job start Sat Apr 11 2020 06:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47354 * 2 1 4 4 C 1.52995 * 109.47354 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47354 * 174.86830 * 4 3 2 6 6 C 1.50699 * 115.55022 * 65.20525 * 5 4 3 7 7 O 1.21275 * 120.00443 * 245.81560 * 6 5 4 8 8 N 1.34778 * 119.99499 * 65.81310 * 6 5 4 9 9 C 1.47066 * 136.06114 * 354.63096 * 8 6 5 10 10 C 1.53755 * 87.89014 * 152.95981 * 9 8 6 11 11 N 1.46495 * 114.08752 * 139.77949 * 10 9 8 12 12 C 1.34776 * 120.00401 * 111.56006 * 11 10 9 13 13 O 1.21284 * 119.99745 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00366 * 180.02562 * 12 11 10 15 15 S 1.81004 * 109.46903 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99936 * 179.97438 * 15 14 12 17 17 H 1.08008 * 119.99592 * 0.02562 * 16 15 14 18 18 C 1.38790 * 120.00450 * 179.97438 * 16 15 14 19 19 N 1.31638 * 119.99961 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00600 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47237 * 59.99845 * 20 18 16 22 22 H 1.48501 * 109.47790 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46956 * 300.00373 * 20 18 16 24 24 C 1.47072 * 136.05642 * 174.99292 * 8 6 5 25 25 C 1.52998 * 117.49858 * 279.54048 * 5 4 3 26 26 C 1.52999 * 117.50220 * 210.88057 * 5 4 3 27 27 H 1.08999 * 109.46990 * 300.00124 * 1 2 3 28 28 H 1.09000 * 109.47565 * 59.99796 * 1 2 3 29 29 H 1.08997 * 109.47321 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47234 * 240.00370 * 2 1 3 31 31 H 1.09001 * 109.47115 * 119.99578 * 2 1 3 32 32 H 1.09000 * 109.46951 * 300.00580 * 3 2 1 33 33 H 1.08999 * 109.47173 * 59.99988 * 3 2 1 34 34 H 1.09000 * 109.47356 * 294.87168 * 4 3 2 35 35 H 1.09001 * 109.47193 * 54.87330 * 4 3 2 36 36 H 1.09005 * 113.46221 * 267.68875 * 9 8 6 37 37 H 1.08996 * 113.47111 * 38.12724 * 9 8 6 38 38 H 1.09003 * 114.39025 * 272.67367 * 10 9 8 39 39 H 0.97009 * 120.00226 * 291.56013 * 11 10 9 40 40 H 1.08999 * 109.46584 * 299.99763 * 14 12 11 41 41 H 1.08999 * 109.47069 * 60.00319 * 14 12 11 42 42 H 0.96999 * 120.00153 * 179.97438 * 19 18 16 43 43 H 1.08999 * 113.46479 * 321.86919 * 24 8 6 44 44 H 1.08995 * 113.46492 * 92.24787 * 24 8 6 45 45 H 1.09001 * 117.50396 * 359.97438 * 25 5 4 46 46 H 1.09007 * 117.50215 * 145.01560 * 25 5 4 47 47 H 1.08994 * 117.50077 * 214.97840 * 26 5 4 48 48 H 1.09006 * 117.49572 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8792 -0.1284 6 6 3.7587 3.7894 1.0289 7 8 3.0125 4.7321 0.8699 8 7 4.3007 3.5558 2.2406 9 6 5.1380 2.5068 2.8417 10 6 5.6645 3.5681 3.8218 11 7 5.8272 3.0852 5.1953 12 6 7.0609 2.9529 5.7215 13 8 8.0365 3.2333 5.0578 14 6 7.2282 2.4556 7.1342 15 16 8.9897 2.3877 7.5452 16 6 8.8948 1.7926 9.2009 17 1 7.9325 1.5898 9.6476 18 6 10.0566 1.5834 9.9309 19 7 11.2294 1.8301 9.3864 20 14 9.9561 0.9519 11.6860 21 1 9.2817 -0.3711 11.6982 22 1 11.3262 0.8148 12.2421 23 1 9.1802 1.9105 12.5133 24 6 4.3097 4.2345 3.5453 25 6 4.1041 3.4973 -1.5277 26 6 5.4140 3.0935 -0.8464 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 3.9330 1.0104 0.9332 35 1 3.9337 0.8511 -0.8396 36 1 4.5633 1.7167 3.3251 37 1 5.9015 2.1206 2.1665 38 1 6.5228 4.1319 3.4564 39 1 5.0469 2.8606 5.7261 40 1 6.7205 3.1334 7.8204 41 1 6.7963 1.4587 7.2220 42 1 12.0413 1.6843 9.8967 43 1 4.3676 5.3203 3.4693 44 1 3.5162 3.9006 4.2137 45 1 3.7569 2.8804 -2.3566 46 1 3.8878 4.5625 -1.6113 47 1 6.0590 3.8930 -0.4820 48 1 5.9284 2.2108 -1.2266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745823528.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:23 Heat of formation + Delta-G solvation = -49.424623 kcal Electronic energy + Delta-G solvation = -26583.871014 eV Core-core repulsion = 22765.685319 eV Total energy + Delta-G solvation = -3818.185695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.93644 -40.62727 -39.36197 -37.90787 -35.82781 -34.95774 -34.55036 -31.47814 -30.87933 -29.54709 -27.63217 -27.21740 -25.62832 -24.16489 -23.46439 -22.15527 -21.88528 -21.76312 -19.84674 -19.54485 -18.08173 -17.90403 -17.46973 -17.37557 -16.84916 -16.48934 -16.39433 -16.18374 -15.97147 -15.14842 -14.98745 -14.73889 -14.69777 -14.61654 -14.24188 -14.06399 -13.89200 -13.74647 -13.49938 -13.26582 -13.13940 -13.07456 -12.84636 -12.61072 -12.53063 -12.48322 -12.28699 -12.20802 -11.96789 -11.72614 -11.49854 -11.31534 -11.10329 -11.09381 -10.92012 -10.79485 -10.23702 -10.15707 -9.89127 -8.62682 -8.31968 -6.09190 1.25348 1.39908 1.43959 1.45647 1.53780 1.58300 1.68170 2.29394 2.37692 2.67039 3.02276 3.15632 3.35053 3.38445 3.54176 3.73969 3.81510 3.88625 3.94436 4.08376 4.10134 4.16863 4.26824 4.35426 4.37140 4.47897 4.49579 4.55787 4.57666 4.64492 4.68142 4.71955 4.82729 4.88755 4.89643 4.93531 5.01346 5.07253 5.13642 5.16075 5.27204 5.38109 5.41360 5.44889 5.47141 6.22398 6.44767 6.56938 6.97995 7.09776 7.23335 8.76658 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017915 B = 0.001899 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.539514 B =14744.503059 C =15405.639555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.114 4.114 4 C -0.070 4.070 5 C -0.162 4.162 6 C 0.580 3.420 7 O -0.582 6.582 8 N -0.641 5.641 9 C 0.094 3.906 10 C 0.116 3.884 11 N -0.696 5.696 12 C 0.542 3.458 13 O -0.560 6.560 14 C -0.131 4.131 15 S -0.152 6.152 16 C -0.545 4.545 17 H 0.084 0.916 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.996 3.004 21 H -0.261 1.261 22 H -0.281 1.281 23 H -0.263 1.263 24 C 0.097 3.903 25 C -0.145 4.145 26 C -0.147 4.147 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.422 0.578 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.270 0.730 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.125 0.875 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.939 -3.625 -19.015 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.152 4.152 4 C -0.107 4.107 5 C -0.165 4.165 6 C 0.371 3.629 7 O -0.462 6.462 8 N -0.375 5.375 9 C -0.030 4.030 10 C 0.009 3.991 11 N -0.351 5.351 12 C 0.328 3.672 13 O -0.437 6.437 14 C -0.282 4.282 15 S 0.075 5.925 16 C -0.693 4.693 17 H 0.102 0.898 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.818 3.182 21 H -0.186 1.186 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.026 4.026 25 C -0.182 4.182 26 C -0.184 4.184 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.261 0.739 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.133 0.867 45 H 0.143 0.857 46 H 0.102 0.898 47 H 0.106 0.894 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.646 -2.612 -20.393 28.437 hybrid contribution -1.168 -0.262 2.075 2.396 sum -20.815 -2.874 -18.318 27.876 Atomic orbital electron populations 1.21786 0.95977 1.01950 1.01521 1.21508 0.95879 0.95729 1.02669 1.21528 0.95038 0.97356 1.01237 1.21135 0.95321 0.90273 1.03992 1.21447 1.05615 0.97445 0.92036 1.19550 0.77497 0.84043 0.81805 1.90682 1.37830 1.33697 1.83979 1.49225 1.52078 1.27521 1.08693 1.23746 0.93008 0.92474 0.93788 1.22616 0.97952 0.96480 0.82075 1.45444 1.07781 1.67615 1.14219 1.20056 0.83253 0.76239 0.87675 1.90714 1.40252 1.50177 1.62581 1.23383 1.02629 1.05907 0.96256 1.85591 1.02880 1.87006 1.16979 1.23178 0.96202 1.50959 0.98960 0.89783 1.26101 0.94029 0.95153 1.03914 1.70176 0.98383 1.46930 1.39266 0.85037 0.77611 0.79129 0.76435 1.18591 1.20656 1.18770 1.23447 0.96426 0.99557 0.83179 1.23073 1.00341 1.01534 0.93246 1.23196 0.89500 1.04393 1.01310 0.93528 0.92809 0.91960 0.90863 0.91729 0.92189 0.94347 0.90719 0.88679 0.86752 0.89013 0.87141 0.73931 0.87028 0.86684 0.92081 0.90319 0.86734 0.85674 0.89770 0.89412 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.12 -1.26 5.93 30.59 0.18 -1.08 16 3 C -0.11 -1.54 5.02 30.59 0.15 -1.38 16 4 C -0.07 -0.82 5.09 30.59 0.16 -0.66 16 5 C -0.16 -2.63 1.73 -52.93 -0.09 -2.72 16 6 C 0.58 13.23 6.82 87.66 0.60 13.83 16 7 O -0.58 -18.14 17.48 -3.02 -0.05 -18.20 16 8 N -0.64 -11.95 3.69 -857.86 -3.16 -15.11 16 9 C 0.09 1.37 7.41 83.26 0.62 1.98 16 10 C 0.12 2.13 4.62 45.55 0.21 2.34 16 11 N -0.70 -13.60 5.38 -441.53 -2.38 -15.98 16 12 C 0.54 17.29 7.85 87.66 0.69 17.98 16 13 O -0.56 -23.43 15.46 -3.04 -0.05 -23.48 16 14 C -0.13 -4.62 6.16 71.24 0.44 -4.19 16 15 S -0.15 -8.01 20.57 -56.49 -1.16 -9.18 16 16 C -0.55 -29.97 9.50 67.95 0.65 -29.33 16 17 H 0.08 4.25 7.80 -2.91 -0.02 4.22 16 18 C 0.01 0.71 5.49 84.85 0.47 1.18 16 19 N -0.91 -54.82 13.22 21.65 0.29 -54.54 16 20 Si 1.00 42.43 29.55 68.60 2.03 44.46 16 21 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 C 0.10 1.57 8.38 83.17 0.70 2.27 16 25 C -0.14 -2.13 9.78 30.62 0.30 -1.83 16 26 C -0.15 -1.98 9.93 30.62 0.30 -1.67 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.04 0.68 7.87 -2.39 -0.02 0.66 16 34 H 0.07 0.82 7.28 -2.39 -0.02 0.80 16 35 H 0.09 0.78 8.09 -2.39 -0.02 0.76 16 36 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.11 2.64 7.46 -2.39 -0.02 2.62 16 39 H 0.42 5.09 8.76 -92.70 -0.81 4.28 16 40 H 0.11 3.53 8.14 -2.40 -0.02 3.51 16 41 H 0.12 3.56 8.14 -2.40 -0.02 3.54 16 42 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.11 1.30 8.13 -2.39 -0.02 1.28 16 45 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.57 8.00 -2.38 -0.02 1.55 16 47 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -79.81 415.99 1.72 -78.09 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.13 Total: 18.21 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 6.08 Total: -4.28 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -5.25 Total: -85.63 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -0.10 Total: -41.67 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.18 kcal Total: -79.81 1.72 -78.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745823528.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.665 kcal (2) G-P(sol) polarization free energy of solvation -79.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds