Wall clock time and date at job start Sat Apr 11 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99769 * 2 1 4 4 C 1.52997 * 109.47103 * 240.00113 * 3 2 1 5 5 C 1.52997 * 109.47238 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.46925 * 120.00282 * 3 2 1 7 7 C 1.50696 * 109.47300 * 180.02562 * 6 3 2 8 8 O 1.21279 * 119.99697 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00141 * 179.97438 * 7 6 3 10 10 C 1.47067 * 136.05761 * 359.63406 * 9 7 6 11 11 C 1.53756 * 87.88796 * 152.95785 * 10 9 7 12 12 N 1.46503 * 114.26556 * 139.79205 * 11 10 9 13 13 C 1.46499 * 119.99921 * 326.47351 * 12 11 10 14 14 C 1.34771 * 120.00039 * 146.47647 * 12 11 10 15 15 O 1.21280 * 120.00077 * 0.02562 * 14 12 11 16 16 C 1.50703 * 119.99892 * 180.02562 * 14 12 11 17 17 S 1.81001 * 109.46925 * 180.02562 * 16 14 12 18 18 C 1.76205 * 99.99747 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00131 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99621 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00108 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99685 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46648 * 60.00242 * 22 20 18 24 24 H 1.48497 * 109.46987 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47048 * 299.99808 * 22 20 18 26 26 C 1.47070 * 136.05851 * 179.97438 * 9 7 6 27 27 H 1.08003 * 120.00332 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00229 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.00104 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47280 * 59.99899 * 4 3 2 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47140 * 300.00046 * 4 3 2 33 33 H 1.09004 * 109.47261 * 59.99705 * 5 3 2 34 34 H 1.09002 * 109.47153 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.46832 * 299.99686 * 5 3 2 36 36 H 1.09004 * 109.46930 * 299.99901 * 6 3 2 37 37 H 1.09004 * 109.47059 * 59.99503 * 6 3 2 38 38 H 1.08995 * 113.46483 * 267.69097 * 10 9 7 39 39 H 1.09007 * 113.46624 * 38.12933 * 10 9 7 40 40 H 1.08993 * 114.39365 * 272.67629 * 11 10 9 41 41 H 1.09000 * 109.47509 * 90.00135 * 13 12 11 42 42 H 1.08996 * 109.47243 * 210.00024 * 13 12 11 43 43 H 1.09004 * 109.47645 * 330.00552 * 13 12 11 44 44 H 1.09001 * 109.46890 * 299.99770 * 16 14 12 45 45 H 1.08996 * 109.47382 * 59.99972 * 16 14 12 46 46 H 0.97002 * 119.99630 * 179.97438 * 21 20 18 47 47 H 1.08998 * 113.46438 * 321.86748 * 26 9 7 48 48 H 1.09003 * 113.46397 * 92.24838 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9430 1.3863 -1.2492 5 6 1.0692 2.4681 0.0006 6 6 2.9431 1.3862 1.2492 7 6 3.6961 2.6915 1.2496 8 8 3.5445 3.4793 0.3401 9 7 4.5380 2.9836 2.2608 10 6 4.9738 2.3228 3.5002 11 6 6.2913 3.1074 3.3881 12 7 6.7991 3.6170 4.6643 13 6 5.8630 4.0387 5.7093 14 6 8.1275 3.6978 4.8770 15 8 8.9025 3.3492 4.0118 16 6 8.6498 4.2215 6.1901 17 16 10.4596 4.2077 6.1681 18 6 10.7900 4.8502 7.7752 19 1 9.9726 5.1149 8.4295 20 6 12.1009 5.0162 8.2001 21 7 13.0972 4.6931 7.4028 22 14 12.4512 5.6981 9.9036 23 1 11.8526 4.8042 10.9272 24 1 13.9192 5.7765 10.1132 25 1 11.8603 7.0550 10.0248 26 6 5.4206 4.1059 2.6133 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 2.3164 1.3285 -2.1392 31 1 3.4883 2.3301 -1.2489 32 1 3.6514 0.5578 -1.2493 33 1 0.4428 2.4101 0.8909 34 1 1.6142 3.4121 0.0011 35 1 0.4423 2.4105 -0.8892 36 1 2.3164 1.3284 2.1392 37 1 3.6514 0.5576 1.2492 38 1 4.3781 2.5969 4.3708 39 1 5.0987 1.2448 3.3967 40 1 7.0561 2.6191 2.7842 41 1 5.6276 3.1894 6.3506 42 1 6.3169 4.8298 6.3061 43 1 4.9477 4.4107 5.2487 44 1 8.2964 5.2415 6.3409 45 1 8.2911 3.5889 7.0021 46 1 14.0133 4.8095 7.6997 47 1 5.9260 4.5470 1.7542 48 1 4.9424 4.8510 3.2491 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001747919985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:36 Heat of formation + Delta-G solvation = -3.555704 kcal Electronic energy + Delta-G solvation = -26795.831465 eV Core-core repulsion = 22979.634796 eV Total energy + Delta-G solvation = -3816.196669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.16328 -39.81497 -38.48266 -36.97260 -34.83339 -32.46284 -31.73544 -30.65646 -29.10369 -27.59309 -27.53713 -26.94872 -26.19819 -25.51774 -23.02539 -21.90467 -19.41345 -19.22001 -18.50580 -17.77168 -17.50990 -17.13764 -16.29751 -16.08856 -15.85444 -15.45467 -15.28637 -14.83790 -14.67407 -14.28351 -14.19499 -13.64233 -13.55795 -13.28075 -13.18049 -13.03929 -12.90195 -12.57617 -12.50151 -12.37427 -12.22790 -12.04958 -12.00936 -11.58475 -11.44077 -11.30627 -11.19937 -11.08416 -11.06534 -10.95759 -10.80299 -9.88584 -9.82369 -9.73818 -9.49118 -9.09274 -9.01697 -8.70635 -8.28350 -6.54864 -6.24941 -3.96331 1.88920 2.29705 2.33162 2.86354 2.93641 3.20965 3.23155 3.26792 3.53154 3.99829 4.08377 4.16834 4.38122 4.48506 4.56465 4.62853 4.67780 4.87096 4.91718 4.96535 5.00558 5.04342 5.06947 5.10233 5.18537 5.26874 5.28190 5.40806 5.42870 5.45210 5.49186 5.53255 5.60440 5.70095 5.72953 5.78774 5.82911 5.83820 6.05953 6.13264 6.16966 6.29308 6.43286 6.44509 7.29451 7.42870 7.55736 7.86356 8.31260 8.39854 9.20241 10.82346 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.037517 B = 0.001736 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.141252 B =16123.720520 C =16302.927858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C -0.021 4.021 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.121 4.121 7 C 0.548 3.452 8 O -0.528 6.528 9 N -0.645 5.645 10 C 0.086 3.914 11 C 0.118 3.882 12 N -0.613 5.613 13 C 0.075 3.925 14 C 0.537 3.463 15 O -0.510 6.510 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.087 3.913 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.269 0.731 47 H 0.085 0.915 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.700 -7.363 -9.417 28.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.163 4.163 3 C -0.021 4.021 4 C -0.207 4.207 5 C -0.212 4.212 6 C -0.161 4.161 7 C 0.338 3.662 8 O -0.405 6.405 9 N -0.381 5.381 10 C -0.038 4.038 11 C 0.012 3.988 12 N -0.349 5.349 13 C -0.069 4.069 14 C 0.325 3.675 15 O -0.383 6.383 16 C -0.301 4.301 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.037 4.037 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.153 0.847 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.570 -7.521 -11.398 28.110 hybrid contribution -0.848 0.711 2.323 2.573 sum -25.418 -6.809 -9.076 27.836 Atomic orbital electron populations 1.24027 0.96161 1.02116 1.00943 1.22933 0.95935 0.97528 0.99917 1.19397 0.94923 0.93412 0.94386 1.22060 0.99242 1.03636 0.95780 1.22183 0.98543 0.99541 1.00981 1.21660 0.99031 0.95254 1.00171 1.20203 0.77339 0.88583 0.80026 1.90605 1.63621 1.51270 1.34974 1.49384 1.44127 1.22869 1.21720 1.23580 0.93632 0.99560 0.87039 1.22766 0.94731 0.95032 0.86301 1.47728 1.06302 1.65884 1.15004 1.21835 0.93497 1.00761 0.90764 1.20425 0.80796 0.77053 0.89216 1.90711 1.55331 1.46821 1.45478 1.23569 1.06746 1.03510 0.96261 1.85430 0.91158 1.84769 1.22043 1.22809 0.94994 1.49891 1.00804 0.90944 1.24991 0.95088 0.95089 0.98346 1.70006 0.99327 1.44882 1.35985 0.86225 0.77416 0.79394 0.82477 1.19936 1.20799 1.19927 1.23506 0.89291 0.91705 0.99181 0.87819 0.88663 0.87411 0.92860 0.89517 0.93232 0.93229 0.89647 0.92653 0.88900 0.88697 0.89002 0.89557 0.84650 0.92221 0.90080 0.91298 0.89057 0.89050 0.92087 0.89667 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.24 13.70 29.02 0.40 -0.84 16 2 C -0.15 -0.98 8.76 -36.02 -0.32 -1.30 16 3 C -0.02 -0.16 0.74 -155.66 -0.11 -0.28 16 4 C -0.15 -1.34 8.16 37.16 0.30 -1.04 16 5 C -0.16 -1.31 6.83 37.16 0.25 -1.06 16 6 C -0.12 -0.90 4.58 -27.88 -0.13 -1.03 16 7 C 0.55 5.63 7.49 -10.99 -0.08 5.54 16 8 O -0.53 -6.99 12.12 5.56 0.07 -6.92 16 9 N -0.64 -6.06 3.69 -185.08 -0.68 -6.74 16 10 C 0.09 0.63 7.85 -8.37 -0.07 0.57 16 11 C 0.12 1.23 4.57 -67.69 -0.31 0.92 16 12 N -0.61 -7.35 3.12 -173.57 -0.54 -7.89 16 13 C 0.07 0.61 8.92 59.85 0.53 1.15 16 14 C 0.54 9.29 7.69 -10.99 -0.08 9.21 16 15 O -0.51 -10.88 15.37 5.56 0.09 -10.80 16 16 C -0.15 -2.84 4.71 36.01 0.17 -2.67 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 18 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 19 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 20 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.66 13.22 55.49 0.73 -24.93 16 22 Si 0.92 20.91 29.55 -169.99 -5.02 15.89 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 C 0.09 0.86 8.17 -8.52 -0.07 0.80 16 27 H 0.10 0.65 5.69 -52.48 -0.30 0.35 16 28 H 0.10 0.50 8.06 -52.49 -0.42 0.07 16 29 H 0.11 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.97 5.51 -51.93 -0.29 0.68 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.37 7.50 -51.93 -0.39 -0.02 16 34 H 0.08 0.91 5.51 -51.93 -0.29 0.63 16 35 H 0.05 0.44 7.50 -51.93 -0.39 0.05 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.52 6.57 -51.93 -0.34 0.18 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.14 1.69 7.29 -51.93 -0.38 1.31 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.70 6.44 -51.93 -0.33 0.36 16 43 H 0.07 0.41 6.18 -51.93 -0.32 0.09 16 44 H 0.09 1.58 7.40 -51.91 -0.38 1.20 16 45 H 0.09 1.58 8.11 -51.92 -0.42 1.16 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 48 H 0.09 0.76 6.97 -51.93 -0.36 0.40 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -34.46 396.00 -8.46 -42.92 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.54 Total: -1.10 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 0.69 Total: -2.60 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: -0.49 Total: -39.56 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.15 Total: -17.72 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.46 -8.46 -42.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747919985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.362 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds