Wall clock time and date at job start Sat Apr 11 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99769 * 2 1 4 4 C 1.52997 * 109.47103 * 240.00113 * 3 2 1 5 5 C 1.52997 * 109.47238 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.46925 * 120.00282 * 3 2 1 7 7 C 1.50696 * 109.47300 * 180.02562 * 6 3 2 8 8 O 1.21279 * 119.99697 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00141 * 179.97438 * 7 6 3 10 10 C 1.47067 * 136.05761 * 359.63406 * 9 7 6 11 11 C 1.53756 * 87.88796 * 152.95785 * 10 9 7 12 12 N 1.46503 * 114.26556 * 139.79205 * 11 10 9 13 13 C 1.46499 * 119.99921 * 326.47351 * 12 11 10 14 14 C 1.34771 * 120.00039 * 146.47647 * 12 11 10 15 15 O 1.21280 * 120.00077 * 0.02562 * 14 12 11 16 16 C 1.50703 * 119.99892 * 180.02562 * 14 12 11 17 17 S 1.81001 * 109.46925 * 180.02562 * 16 14 12 18 18 C 1.76205 * 99.99747 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00131 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99621 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00108 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99685 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46648 * 60.00242 * 22 20 18 24 24 H 1.48497 * 109.46987 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47048 * 299.99808 * 22 20 18 26 26 C 1.47070 * 136.05851 * 179.97438 * 9 7 6 27 27 H 1.08003 * 120.00332 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00229 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.00104 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47280 * 59.99899 * 4 3 2 31 31 H 1.09002 * 109.46777 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47140 * 300.00046 * 4 3 2 33 33 H 1.09004 * 109.47261 * 59.99705 * 5 3 2 34 34 H 1.09002 * 109.47153 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.46832 * 299.99686 * 5 3 2 36 36 H 1.09004 * 109.46930 * 299.99901 * 6 3 2 37 37 H 1.09004 * 109.47059 * 59.99503 * 6 3 2 38 38 H 1.08995 * 113.46483 * 267.69097 * 10 9 7 39 39 H 1.09007 * 113.46624 * 38.12933 * 10 9 7 40 40 H 1.08993 * 114.39365 * 272.67629 * 11 10 9 41 41 H 1.09000 * 109.47509 * 90.00135 * 13 12 11 42 42 H 1.08996 * 109.47243 * 210.00024 * 13 12 11 43 43 H 1.09004 * 109.47645 * 330.00552 * 13 12 11 44 44 H 1.09001 * 109.46890 * 299.99770 * 16 14 12 45 45 H 1.08996 * 109.47382 * 59.99972 * 16 14 12 46 46 H 0.97002 * 119.99630 * 179.97438 * 21 20 18 47 47 H 1.08998 * 113.46438 * 321.86748 * 26 9 7 48 48 H 1.09003 * 113.46397 * 92.24838 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9430 1.3863 -1.2492 5 6 1.0692 2.4681 0.0006 6 6 2.9431 1.3862 1.2492 7 6 3.6961 2.6915 1.2496 8 8 3.5445 3.4793 0.3401 9 7 4.5380 2.9836 2.2608 10 6 4.9738 2.3228 3.5002 11 6 6.2913 3.1074 3.3881 12 7 6.7991 3.6170 4.6643 13 6 5.8630 4.0387 5.7093 14 6 8.1275 3.6978 4.8770 15 8 8.9025 3.3492 4.0118 16 6 8.6498 4.2215 6.1901 17 16 10.4596 4.2077 6.1681 18 6 10.7900 4.8502 7.7752 19 1 9.9726 5.1149 8.4295 20 6 12.1009 5.0162 8.2001 21 7 13.0972 4.6931 7.4028 22 14 12.4512 5.6981 9.9036 23 1 11.8526 4.8042 10.9272 24 1 13.9192 5.7765 10.1132 25 1 11.8603 7.0550 10.0248 26 6 5.4206 4.1059 2.6133 27 1 -0.5401 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 2.3164 1.3285 -2.1392 31 1 3.4883 2.3301 -1.2489 32 1 3.6514 0.5578 -1.2493 33 1 0.4428 2.4101 0.8909 34 1 1.6142 3.4121 0.0011 35 1 0.4423 2.4105 -0.8892 36 1 2.3164 1.3284 2.1392 37 1 3.6514 0.5576 1.2492 38 1 4.3781 2.5969 4.3708 39 1 5.0987 1.2448 3.3967 40 1 7.0561 2.6191 2.7842 41 1 5.6276 3.1894 6.3506 42 1 6.3169 4.8298 6.3061 43 1 4.9477 4.4107 5.2487 44 1 8.2964 5.2415 6.3409 45 1 8.2911 3.5889 7.0021 46 1 14.0133 4.8095 7.6997 47 1 5.9260 4.5470 1.7542 48 1 4.9424 4.8510 3.2491 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747919985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:35 Heat of formation + Delta-G solvation = -25.607557 kcal Electronic energy + Delta-G solvation = -26796.787705 eV Core-core repulsion = 22979.634796 eV Total energy + Delta-G solvation = -3817.152909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.99747 -40.76781 -39.50749 -37.71113 -35.91741 -34.56030 -32.34487 -31.62214 -30.23800 -28.37009 -28.21389 -27.79261 -27.57576 -26.92472 -23.77000 -22.75289 -20.57080 -19.94119 -19.58216 -19.07584 -18.41806 -18.14122 -17.31904 -17.02143 -16.85528 -16.59964 -16.40048 -16.23453 -15.91186 -15.27908 -14.90780 -14.78558 -14.61913 -14.45152 -14.08556 -13.96146 -13.81951 -13.53907 -13.43443 -13.25046 -13.19140 -13.11929 -12.88548 -12.84351 -12.68193 -12.60396 -12.28832 -12.10194 -12.01010 -11.85552 -11.72390 -11.53362 -11.10587 -10.96155 -10.56286 -10.23986 -10.23577 -9.80750 -9.68260 -8.64751 -8.32323 -6.10405 1.22442 1.37920 1.45223 1.45636 1.53402 1.54231 1.57890 1.73190 2.23459 2.30300 3.01985 3.26288 3.27901 3.37313 3.72390 3.75463 3.82171 3.95329 4.00669 4.08055 4.20351 4.30718 4.35284 4.40438 4.45203 4.47054 4.52255 4.57733 4.63062 4.70847 4.73342 4.74156 4.82356 4.91181 4.97197 5.03680 5.04402 5.09923 5.18725 5.42284 5.43993 5.50225 5.53582 5.78454 5.95608 6.20230 6.22508 6.66149 7.09067 7.10378 7.11892 8.76449 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.037517 B = 0.001736 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.141252 B =16123.720520 C =16302.927858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.150 4.150 3 C -0.021 4.021 4 C -0.148 4.148 5 C -0.151 4.151 6 C -0.115 4.115 7 C 0.541 3.459 8 O -0.565 6.565 9 N -0.647 5.647 10 C 0.104 3.896 11 C 0.108 3.892 12 N -0.596 5.596 13 C 0.062 3.938 14 C 0.535 3.465 15 O -0.564 6.564 16 C -0.123 4.123 17 S -0.157 6.157 18 C -0.545 4.545 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.261 1.261 24 H -0.281 1.281 25 H -0.262 1.262 26 C 0.087 3.913 27 H 0.102 0.898 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.270 0.730 47 H 0.061 0.939 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.880 -8.130 -7.095 30.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.168 4.168 3 C -0.022 4.022 4 C -0.205 4.205 5 C -0.208 4.208 6 C -0.154 4.154 7 C 0.333 3.667 8 O -0.444 6.444 9 N -0.382 5.382 10 C -0.019 4.019 11 C 0.002 3.998 12 N -0.329 5.329 13 C -0.079 4.079 14 C 0.323 3.677 15 O -0.442 6.442 16 C -0.274 4.274 17 S 0.070 5.930 18 C -0.692 4.692 19 H 0.103 0.897 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.185 1.185 24 H -0.207 1.207 25 H -0.187 1.187 26 C -0.037 4.037 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.137 0.863 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.141 0.859 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -27.820 -8.295 -9.055 30.410 hybrid contribution -0.006 0.964 1.502 1.784 sum -27.826 -7.331 -7.553 29.750 Atomic orbital electron populations 1.24163 0.96101 1.02715 0.99979 1.22900 0.96063 0.97097 1.00756 1.19387 0.94782 0.93956 0.94067 1.22003 0.99409 1.02407 0.96682 1.22110 0.98513 0.98629 1.01533 1.21695 0.99184 0.93809 1.00713 1.20798 0.77248 0.89215 0.79416 1.90610 1.64910 1.52597 1.36312 1.49429 1.43622 1.22837 1.22362 1.23636 0.91085 1.00167 0.86990 1.22762 0.95405 0.96189 0.85437 1.47610 1.04848 1.64200 1.16244 1.22223 0.93551 1.01893 0.90222 1.20187 0.82448 0.76978 0.88056 1.90697 1.57231 1.49501 1.46724 1.23386 1.00482 1.05341 0.98173 1.85639 0.99120 1.85182 1.23016 1.23170 0.95713 1.49526 1.00830 0.89685 1.26119 0.94824 0.95253 1.02949 1.70184 0.99777 1.46462 1.38399 0.85021 0.77240 0.79070 0.76781 1.18523 1.20666 1.18674 1.23497 0.89439 0.92215 0.98550 0.87985 0.87369 0.86278 0.92901 0.92146 0.92552 0.92121 0.92165 0.92628 0.86754 0.87099 0.85930 0.87608 0.87390 0.89727 0.90233 0.88247 0.87151 0.86882 0.92083 0.91993 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 13.70 67.78 0.93 -1.02 16 2 C -0.15 -1.67 8.76 25.65 0.22 -1.44 16 3 C -0.02 -0.31 0.74 -52.93 -0.04 -0.35 16 4 C -0.15 -2.61 8.16 71.98 0.59 -2.02 16 5 C -0.15 -2.42 6.83 71.98 0.49 -1.93 16 6 C -0.11 -1.42 4.58 29.85 0.14 -1.29 16 7 C 0.54 10.50 7.49 87.66 0.66 11.16 16 8 O -0.56 -15.24 12.12 -3.03 -0.04 -15.28 16 9 N -0.65 -10.96 3.69 -857.87 -3.16 -14.12 16 10 C 0.10 1.17 7.85 83.27 0.65 1.82 16 11 C 0.11 2.12 4.57 45.54 0.21 2.32 16 12 N -0.60 -13.10 3.12 -821.45 -2.56 -15.66 16 13 C 0.06 0.76 8.92 127.77 1.14 1.90 16 14 C 0.54 18.41 7.69 87.66 0.67 19.09 16 15 O -0.56 -25.05 15.37 -3.03 -0.05 -25.10 16 16 C -0.12 -4.53 4.71 71.24 0.34 -4.20 16 17 S -0.16 -8.47 20.57 -56.49 -1.16 -9.63 16 18 C -0.54 -30.21 9.50 67.95 0.65 -29.56 16 19 H 0.09 4.31 7.80 -2.91 -0.02 4.29 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -55.34 13.22 21.65 0.29 -55.06 16 22 Si 1.00 42.57 29.55 68.60 2.03 44.59 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 26 C 0.09 1.64 8.17 83.17 0.68 2.32 16 27 H 0.10 1.05 5.69 -2.91 -0.02 1.04 16 28 H 0.11 0.82 8.06 -2.91 -0.02 0.79 16 29 H 0.12 1.06 8.06 -2.91 -0.02 1.04 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.41 5.51 -2.39 -0.01 1.40 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.81 7.50 -2.38 -0.02 0.79 16 34 H 0.06 1.31 5.51 -2.39 -0.01 1.29 16 35 H 0.05 0.85 7.50 -2.39 -0.02 0.83 16 36 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.12 0.71 6.57 -2.39 -0.02 0.70 16 39 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.11 2.79 7.29 -2.39 -0.02 2.77 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 1.07 6.44 -2.39 -0.02 1.05 16 43 H 0.10 0.68 6.18 -2.39 -0.01 0.66 16 44 H 0.11 3.64 7.40 -2.39 -0.02 3.62 16 45 H 0.11 3.67 8.11 -2.40 -0.02 3.65 16 46 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 47 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.11 1.59 6.97 -2.39 -0.02 1.58 16 Total: -1.00 -80.37 396.00 4.08 -76.28 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.95 Total: 15.95 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 7.79 Total: -1.98 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -5.44 Total: -84.84 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -0.08 Total: -40.38 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -80.37 4.08 -76.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747919985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.676 kcal (2) G-P(sol) polarization free energy of solvation -80.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds