Wall clock time and date at job start Sat Apr 11 2020 06:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32996 * 119.99927 * 2 1 4 4 C 1.50700 * 120.00198 * 359.97438 * 3 2 1 5 5 C 1.47107 * 119.99896 * 180.02562 * 3 2 1 6 6 O 1.21614 * 119.99989 * 352.49216 * 5 3 2 7 7 N 1.34773 * 119.99573 * 172.49759 * 5 3 2 8 8 C 1.48150 * 127.83530 * 174.30723 * 7 5 3 9 9 C 1.54391 * 104.62027 * 140.39105 * 8 7 5 10 10 C 1.54279 * 104.95700 * 23.86483 * 9 8 7 11 11 C 1.53004 * 110.34456 * 241.02428 * 10 9 8 12 12 C 1.52999 * 110.34405 * 118.87349 * 10 9 8 13 13 N 1.46494 * 109.47611 * 179.97438 * 12 10 9 14 14 C 1.34772 * 120.00363 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99633 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00349 * 179.72728 * 14 13 12 17 17 S 1.81000 * 109.47124 * 180.27566 * 16 14 13 18 18 C 1.76205 * 99.99850 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99789 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00113 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99945 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99837 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47162 * 89.99915 * 22 20 18 24 24 H 1.48499 * 109.47083 * 210.00168 * 22 20 18 25 25 H 1.48497 * 109.47169 * 330.00185 * 22 20 18 26 26 C 1.48146 * 127.84384 * 354.27441 * 7 5 3 27 27 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47356 * 300.00342 * 1 2 3 29 29 H 1.09006 * 109.47059 * 60.00091 * 1 2 3 30 30 H 1.07993 * 119.99901 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46744 * 265.24305 * 4 3 2 32 32 H 1.09001 * 109.46870 * 25.23438 * 4 3 2 33 33 H 1.08998 * 109.47284 * 145.24136 * 4 3 2 34 34 H 1.08999 * 110.40411 * 21.60379 * 8 7 5 35 35 H 1.08996 * 110.50770 * 259.22649 * 8 7 5 36 36 H 1.09004 * 110.33839 * 264.99372 * 9 8 7 37 37 H 1.08993 * 110.34166 * 142.74102 * 9 8 7 38 38 H 1.09003 * 109.47068 * 298.53168 * 11 10 9 39 39 H 1.09003 * 109.47141 * 58.52450 * 11 10 9 40 40 H 1.08998 * 109.47272 * 178.53130 * 11 10 9 41 41 H 1.09001 * 109.46994 * 59.99506 * 12 10 9 42 42 H 1.09003 * 109.46789 * 300.00409 * 12 10 9 43 43 H 0.96997 * 119.99696 * 0.02562 * 13 12 10 44 44 H 1.09000 * 109.46907 * 300.27119 * 16 14 13 45 45 H 1.09001 * 109.46927 * 60.27493 * 16 14 13 46 46 H 0.97008 * 119.99802 * 180.02562 * 21 20 18 47 47 H 1.09000 * 110.40503 * 100.82451 * 26 7 5 48 48 H 1.08998 * 110.40437 * 338.39326 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2511 0.1076 0.1366 7 7 4.3167 2.3090 -0.1530 8 6 5.7794 2.5274 -0.0652 9 6 6.0916 3.5340 -1.1934 10 6 4.7620 4.2750 -1.4450 11 6 4.2913 4.0494 -2.8833 12 6 4.9261 5.7708 -1.1686 13 7 3.6542 6.4552 -1.4138 14 6 3.5601 7.7875 -1.2334 15 8 4.5286 8.4199 -0.8684 16 6 2.2534 8.4925 -1.4914 17 16 2.4492 10.2629 -1.1700 18 6 0.8202 10.8231 -1.5406 19 1 0.0658 10.1182 -1.8571 20 6 0.5065 12.1702 -1.4247 21 7 -0.7105 12.5886 -1.7011 22 14 1.8113 13.3894 -0.8766 23 1 2.5294 13.9139 -2.0658 24 1 1.1655 14.5136 -0.1526 25 1 2.7765 12.7097 0.0244 26 6 3.7629 3.6513 -0.4469 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.0469 -0.9353 0.0004 31 1 1.3111 2.8139 -1.0249 32 1 0.4316 2.3068 0.4372 33 1 1.9677 3.1938 0.5853 34 1 6.3139 1.5921 -0.2316 35 1 6.0451 2.9487 0.9043 36 1 6.4085 3.0077 -2.0938 37 1 6.8617 4.2356 -0.8728 38 1 5.0326 4.4493 -3.5752 39 1 4.1670 2.9813 -3.0616 40 1 3.3391 4.5569 -3.0378 41 1 5.6916 6.1803 -1.8278 42 1 5.2241 5.9179 -0.1305 43 1 2.8796 5.9494 -1.7053 44 1 1.9585 8.3422 -2.5300 45 1 1.4853 8.0864 -0.8332 46 1 -0.9297 13.5302 -1.6204 47 1 3.7117 4.2489 0.4632 48 1 2.7760 3.5639 -0.9014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001748147147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:53 Heat of formation + Delta-G solvation = -51.706985 kcal Electronic energy + Delta-G solvation = -27332.608618 eV Core-core repulsion = 23514.323953 eV Total energy + Delta-G solvation = -3818.284665 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.92722 -39.46429 -38.32696 -35.99031 -35.02022 -32.77336 -32.46623 -31.04494 -29.60200 -28.93339 -27.58827 -26.68625 -25.74188 -25.48054 -23.73274 -21.08627 -20.38227 -19.70957 -18.75019 -17.90401 -16.99457 -16.77366 -16.44288 -16.26244 -15.59926 -15.48352 -14.99875 -14.78699 -14.44491 -14.31436 -13.99933 -13.91551 -13.78850 -13.69521 -13.31430 -13.23300 -12.99853 -12.86622 -12.81517 -12.74238 -12.64418 -12.08607 -11.92455 -11.78958 -11.69154 -11.38243 -11.28494 -11.07555 -11.03401 -10.91368 -10.62613 -10.17101 -9.88564 -9.58322 -9.50728 -9.07714 -9.02443 -8.99819 -8.53397 -6.95121 -6.31828 -4.03757 0.99869 2.57808 2.72176 2.90362 2.92459 3.26288 3.31503 3.48098 3.60506 3.94661 4.03880 4.27310 4.30457 4.37007 4.50179 4.67148 4.71790 4.75800 4.77326 4.84974 4.86327 5.02343 5.07393 5.10603 5.14778 5.20962 5.24040 5.25376 5.36836 5.38639 5.44083 5.46055 5.54507 5.55102 5.57127 5.64175 5.71835 5.77814 5.78613 5.92414 5.96311 6.06146 6.16568 6.44143 7.18548 7.52329 7.82654 7.91178 8.38468 8.42996 9.14437 10.77362 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.002329 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.728267 B =12021.279607 C =13362.418336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.190 4.190 4 C -0.129 4.129 5 C 0.577 3.423 6 O -0.548 6.548 7 N -0.616 5.616 8 C 0.104 3.896 9 C -0.123 4.123 10 C -0.089 4.089 11 C -0.139 4.139 12 C 0.136 3.864 13 N -0.737 5.737 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.125 4.125 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.088 3.912 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.398 0.602 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.080 0.920 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.765 -25.028 1.009 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.193 4.193 4 C -0.185 4.185 5 C 0.368 3.632 6 O -0.427 6.427 7 N -0.350 5.350 8 C -0.019 4.019 9 C -0.162 4.162 10 C -0.090 4.090 11 C -0.196 4.196 12 C 0.012 3.988 13 N -0.392 5.392 14 C 0.316 3.684 15 O -0.393 6.393 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.035 4.035 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.232 0.768 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.527 -24.466 1.707 25.966 hybrid contribution -1.132 -0.195 -0.414 1.221 sum 7.395 -24.661 1.293 25.779 Atomic orbital electron populations 1.21015 0.91869 1.03169 1.02843 1.23585 0.96417 0.97726 0.91408 1.21328 0.92206 0.96941 1.08776 1.21298 1.00412 0.94509 1.02261 1.18058 0.87522 0.81690 0.75888 1.90787 1.70177 1.30657 1.51070 1.48746 1.08134 1.07566 1.70511 1.22341 0.80957 0.99796 0.98772 1.22610 0.96464 0.97826 0.99289 1.21806 0.96146 0.94505 0.96552 1.21881 1.01728 1.01874 0.94104 1.21366 0.86739 0.88900 1.01792 1.45997 1.13448 1.08070 1.71682 1.20279 0.90182 0.81424 0.76468 1.90710 1.38707 1.65267 1.44578 1.23280 0.97159 1.01630 1.05458 1.84814 1.19041 0.98192 1.89492 1.22308 0.94561 0.97169 1.52864 0.89388 1.24714 0.95411 0.97561 0.93636 1.69935 1.18707 1.16357 1.46671 0.86736 0.82589 0.81787 0.80749 1.19212 1.19948 1.15913 1.23250 0.98758 0.82724 0.98741 0.91338 0.90449 0.90540 0.85713 0.90558 0.90857 0.90603 0.89757 0.90835 0.90230 0.89535 0.91679 0.92230 0.92091 0.90956 0.91155 0.76776 0.88518 0.88480 0.91923 0.90223 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.65 8.84 36.00 0.32 -0.34 16 2 C -0.07 -0.54 9.84 -36.13 -0.36 -0.90 16 3 C -0.19 -1.60 5.98 -102.84 -0.62 -2.22 16 4 C -0.13 -0.79 7.63 36.01 0.27 -0.51 16 5 C 0.58 6.33 7.83 -12.66 -0.10 6.23 16 6 O -0.55 -7.90 16.50 5.27 0.09 -7.82 16 7 N -0.62 -5.45 3.32 -170.70 -0.57 -6.02 16 8 C 0.10 0.81 7.07 -2.41 -0.02 0.79 16 9 C -0.12 -0.78 6.30 -25.33 -0.16 -0.94 16 10 C -0.09 -0.60 0.73 -153.11 -0.11 -0.71 16 11 C -0.14 -0.89 8.05 37.16 0.30 -0.59 16 12 C 0.14 1.24 4.28 -4.05 -0.02 1.23 16 13 N -0.74 -7.87 5.08 -60.30 -0.31 -8.17 16 14 C 0.53 8.58 7.85 -10.99 -0.09 8.49 16 15 O -0.52 -10.51 15.86 5.55 0.09 -10.42 16 16 C -0.12 -2.24 6.16 36.01 0.22 -2.02 16 17 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 18 C -0.52 -14.64 10.04 30.94 0.31 -14.33 16 19 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 20 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 21 N -0.88 -26.14 13.97 55.49 0.78 -25.36 16 22 Si 0.86 21.41 27.74 -169.99 -4.72 16.70 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 26 C 0.09 0.61 3.78 -2.41 -0.01 0.60 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.35 7.41 -51.93 -0.39 -0.04 16 29 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 30 H 0.13 1.06 7.51 -52.49 -0.39 0.67 16 31 H 0.08 0.38 6.98 -51.93 -0.36 0.02 16 32 H 0.07 0.38 6.33 -51.93 -0.33 0.05 16 33 H 0.08 0.47 5.68 -51.93 -0.29 0.18 16 34 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.49 7.71 -51.93 -0.40 0.09 16 37 H 0.09 0.48 7.71 -51.93 -0.40 0.08 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.36 6.78 -51.93 -0.35 0.01 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.40 3.17 6.99 -40.82 -0.29 2.88 16 44 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 45 H 0.10 1.60 8.14 -51.92 -0.42 1.18 16 46 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.08 0.57 7.59 -51.93 -0.39 0.18 16 48 H 0.10 0.60 4.05 -51.93 -0.21 0.38 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -35.76 393.96 -8.43 -44.19 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.59 Total: -0.99 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -0.14 Total: -2.58 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.10 Total: -39.55 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.17 Total: -18.24 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.72 Total: 16.70 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.76 -8.43 -44.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001748147147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.521 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds