Wall clock time and date at job start Sat Apr 11 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32996 * 119.99927 * 2 1 4 4 C 1.50700 * 120.00198 * 359.97438 * 3 2 1 5 5 C 1.47107 * 119.99896 * 180.02562 * 3 2 1 6 6 O 1.21614 * 119.99989 * 352.49216 * 5 3 2 7 7 N 1.34773 * 119.99573 * 172.49759 * 5 3 2 8 8 C 1.48150 * 127.83530 * 174.30723 * 7 5 3 9 9 C 1.54391 * 104.62027 * 140.39105 * 8 7 5 10 10 C 1.54279 * 104.95700 * 23.86483 * 9 8 7 11 11 C 1.53004 * 110.34456 * 241.02428 * 10 9 8 12 12 C 1.52999 * 110.34405 * 118.87349 * 10 9 8 13 13 N 1.46494 * 109.47611 * 179.97438 * 12 10 9 14 14 C 1.34772 * 120.00363 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99633 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00349 * 179.72728 * 14 13 12 17 17 S 1.81000 * 109.47124 * 180.27566 * 16 14 13 18 18 C 1.76205 * 99.99850 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99789 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00113 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99945 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99837 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47162 * 89.99915 * 22 20 18 24 24 H 1.48499 * 109.47083 * 210.00168 * 22 20 18 25 25 H 1.48497 * 109.47169 * 330.00185 * 22 20 18 26 26 C 1.48146 * 127.84384 * 354.27441 * 7 5 3 27 27 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47356 * 300.00342 * 1 2 3 29 29 H 1.09006 * 109.47059 * 60.00091 * 1 2 3 30 30 H 1.07993 * 119.99901 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.46744 * 265.24305 * 4 3 2 32 32 H 1.09001 * 109.46870 * 25.23438 * 4 3 2 33 33 H 1.08998 * 109.47284 * 145.24136 * 4 3 2 34 34 H 1.08999 * 110.40411 * 21.60379 * 8 7 5 35 35 H 1.08996 * 110.50770 * 259.22649 * 8 7 5 36 36 H 1.09004 * 110.33839 * 264.99372 * 9 8 7 37 37 H 1.08993 * 110.34166 * 142.74102 * 9 8 7 38 38 H 1.09003 * 109.47068 * 298.53168 * 11 10 9 39 39 H 1.09003 * 109.47141 * 58.52450 * 11 10 9 40 40 H 1.08998 * 109.47272 * 178.53130 * 11 10 9 41 41 H 1.09001 * 109.46994 * 59.99506 * 12 10 9 42 42 H 1.09003 * 109.46789 * 300.00409 * 12 10 9 43 43 H 0.96997 * 119.99696 * 0.02562 * 13 12 10 44 44 H 1.09000 * 109.46907 * 300.27119 * 16 14 13 45 45 H 1.09001 * 109.46927 * 60.27493 * 16 14 13 46 46 H 0.97008 * 119.99802 * 180.02562 * 21 20 18 47 47 H 1.09000 * 110.40503 * 100.82451 * 26 7 5 48 48 H 1.08998 * 110.40437 * 338.39326 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2511 0.1076 0.1366 7 7 4.3167 2.3090 -0.1530 8 6 5.7794 2.5274 -0.0652 9 6 6.0916 3.5340 -1.1934 10 6 4.7620 4.2750 -1.4450 11 6 4.2913 4.0494 -2.8833 12 6 4.9261 5.7708 -1.1686 13 7 3.6542 6.4552 -1.4138 14 6 3.5601 7.7875 -1.2334 15 8 4.5286 8.4199 -0.8684 16 6 2.2534 8.4925 -1.4914 17 16 2.4492 10.2629 -1.1700 18 6 0.8202 10.8231 -1.5406 19 1 0.0658 10.1182 -1.8571 20 6 0.5065 12.1702 -1.4247 21 7 -0.7105 12.5886 -1.7011 22 14 1.8113 13.3894 -0.8766 23 1 2.5294 13.9139 -2.0658 24 1 1.1655 14.5136 -0.1526 25 1 2.7765 12.7097 0.0244 26 6 3.7629 3.6513 -0.4469 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.0469 -0.9353 0.0004 31 1 1.3111 2.8139 -1.0249 32 1 0.4316 2.3068 0.4372 33 1 1.9677 3.1938 0.5853 34 1 6.3139 1.5921 -0.2316 35 1 6.0451 2.9487 0.9043 36 1 6.4085 3.0077 -2.0938 37 1 6.8617 4.2356 -0.8728 38 1 5.0326 4.4493 -3.5752 39 1 4.1670 2.9813 -3.0616 40 1 3.3391 4.5569 -3.0378 41 1 5.6916 6.1803 -1.8278 42 1 5.2241 5.9179 -0.1305 43 1 2.8796 5.9494 -1.7053 44 1 1.9585 8.3422 -2.5300 45 1 1.4853 8.0864 -0.8332 46 1 -0.9297 13.5302 -1.6204 47 1 3.7117 4.2489 0.4632 48 1 2.7760 3.5639 -0.9014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001748147147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:52 Heat of formation + Delta-G solvation = -75.793191 kcal Electronic energy + Delta-G solvation = -27333.653074 eV Core-core repulsion = 23514.323953 eV Total energy + Delta-G solvation = -3819.329122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65522 -40.57178 -39.21407 -36.60312 -35.98471 -34.64194 -33.64702 -31.70890 -30.81171 -29.45764 -28.19108 -27.87570 -27.33954 -26.25668 -24.39558 -21.95882 -21.35159 -20.47979 -19.75582 -19.36095 -17.91530 -17.64598 -17.53029 -17.07595 -17.04218 -16.59259 -16.51906 -15.70500 -15.44120 -15.25943 -14.98093 -14.85276 -14.66286 -14.49152 -14.40217 -14.18158 -13.85346 -13.82573 -13.40950 -13.35802 -13.30802 -13.23538 -13.11682 -12.96781 -12.65429 -12.60009 -12.40499 -12.19807 -11.97180 -11.82801 -11.66414 -11.49086 -11.14452 -10.96803 -10.92750 -10.48356 -10.15921 -10.07805 -9.67082 -8.95176 -8.48815 -6.18528 0.34703 1.03383 1.33508 1.49575 1.59391 1.63738 1.90445 2.16429 2.25784 2.30053 2.76028 2.89841 3.31912 3.41764 3.67026 3.76626 3.95435 3.96650 4.06699 4.17283 4.26799 4.28960 4.30536 4.38443 4.50050 4.54032 4.63594 4.65413 4.71961 4.74408 4.77707 4.84197 4.86489 4.88900 4.98616 5.01046 5.08056 5.12297 5.18365 5.24424 5.36845 5.45755 5.49016 5.64181 5.73766 6.14977 6.46836 6.51013 6.97053 7.04541 7.25292 8.63390 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.002329 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.728267 B =12021.279607 C =13362.418336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 C -0.204 4.204 4 C -0.126 4.126 5 C 0.566 3.434 6 O -0.596 6.596 7 N -0.615 5.615 8 C 0.098 3.902 9 C -0.116 4.116 10 C -0.077 4.077 11 C -0.138 4.138 12 C 0.139 3.861 13 N -0.709 5.709 14 C 0.537 3.463 15 O -0.563 6.563 16 C -0.112 4.112 17 S -0.179 6.179 18 C -0.525 4.525 19 H 0.064 0.936 20 C 0.045 3.955 21 N -0.918 5.918 22 Si 0.913 3.087 23 H -0.264 1.264 24 H -0.262 1.262 25 H -0.236 1.236 26 C 0.086 3.914 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.415 0.585 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.276 0.724 47 H 0.083 0.917 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 -25.459 0.809 26.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.089 4.089 3 C -0.207 4.207 4 C -0.182 4.182 5 C 0.359 3.641 6 O -0.479 6.479 7 N -0.346 5.346 8 C -0.024 4.024 9 C -0.155 4.155 10 C -0.078 4.078 11 C -0.195 4.195 12 C 0.015 3.985 13 N -0.364 5.364 14 C 0.322 3.678 15 O -0.441 6.441 16 C -0.263 4.263 17 S 0.047 5.953 18 C -0.673 4.673 19 H 0.082 0.918 20 C -0.161 4.161 21 N -0.556 5.556 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.186 1.186 25 H -0.159 1.159 26 C -0.035 4.035 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.253 0.747 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.454 -24.919 1.488 26.356 hybrid contribution -1.109 -0.267 -0.378 1.201 sum 7.345 -25.186 1.110 26.259 Atomic orbital electron populations 1.21056 0.89599 1.04118 1.03698 1.23762 0.97991 0.96887 0.90228 1.21431 0.90908 0.98416 1.09919 1.21331 1.00558 0.93052 1.03260 1.18580 0.88684 0.81500 0.75322 1.90753 1.71269 1.32333 1.53534 1.48811 1.08643 1.07781 1.69379 1.22452 0.80531 0.99658 0.99801 1.22582 0.96524 0.97511 0.98878 1.21684 0.96446 0.92731 0.96936 1.21883 1.02197 1.01935 0.93488 1.21455 0.85544 0.89881 1.01610 1.45724 1.14860 1.06225 1.69544 1.19902 0.88666 0.82830 0.76395 1.90706 1.39724 1.66595 1.47109 1.23284 0.99150 0.96821 1.07028 1.84761 1.16649 1.04109 1.89764 1.22467 0.95822 0.97005 1.51989 0.91761 1.25550 0.97227 0.99405 0.93882 1.70014 1.20401 1.17120 1.48068 0.85886 0.80235 0.79874 0.80503 1.18845 1.18635 1.15949 1.23396 0.99454 0.81637 0.99044 0.90511 0.89523 0.89372 0.87458 0.89092 0.89646 0.90665 0.91106 0.90134 0.89817 0.88398 0.91625 0.92384 0.91159 0.91308 0.91407 0.74735 0.86782 0.86549 0.91463 0.89911 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 8.84 71.24 0.63 -0.37 16 2 C -0.07 -0.99 9.84 24.52 0.24 -0.75 16 3 C -0.20 -3.21 5.98 -18.70 -0.11 -3.33 16 4 C -0.13 -1.20 7.63 71.24 0.54 -0.66 16 5 C 0.57 12.32 7.83 86.57 0.68 13.00 16 6 O -0.60 -17.86 16.50 -4.07 -0.07 -17.93 16 7 N -0.61 -10.20 3.32 -812.21 -2.69 -12.89 16 8 C 0.10 1.44 7.07 86.53 0.61 2.05 16 9 C -0.12 -1.25 6.30 31.50 0.20 -1.05 16 10 C -0.08 -0.83 0.73 -51.28 -0.04 -0.87 16 11 C -0.14 -1.36 8.05 71.98 0.58 -0.78 16 12 C 0.14 2.15 4.28 86.38 0.37 2.52 16 13 N -0.71 -12.86 5.08 -463.07 -2.35 -15.21 16 14 C 0.54 16.04 7.85 87.66 0.69 16.73 16 15 O -0.56 -21.96 15.86 -3.05 -0.05 -22.01 16 16 C -0.11 -3.78 6.16 71.24 0.44 -3.34 16 17 S -0.18 -8.63 18.55 -56.49 -1.05 -9.68 16 18 C -0.53 -29.47 10.04 67.95 0.68 -28.79 16 19 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 20 C 0.04 2.56 5.50 84.86 0.47 3.02 16 21 N -0.92 -54.79 13.97 21.65 0.30 -54.48 16 22 Si 0.91 44.01 27.74 68.60 1.90 45.92 16 23 H -0.26 -12.44 7.11 99.48 0.71 -11.74 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.24 -11.30 6.74 99.48 0.67 -10.63 16 26 C 0.09 0.98 3.78 86.53 0.33 1.30 16 27 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.09 0.55 7.41 -2.38 -0.02 0.54 16 29 H 0.09 0.52 8.10 -2.38 -0.02 0.50 16 30 H 0.11 1.90 7.51 -2.91 -0.02 1.88 16 31 H 0.09 0.59 6.98 -2.39 -0.02 0.57 16 32 H 0.08 0.63 6.33 -2.39 -0.02 0.61 16 33 H 0.07 0.73 5.68 -2.39 -0.01 0.71 16 34 H 0.07 1.24 7.84 -2.39 -0.02 1.22 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 0.87 7.71 -2.38 -0.02 0.85 16 37 H 0.10 0.87 7.71 -2.39 -0.02 0.85 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.57 6.78 -2.39 -0.02 0.55 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 43 H 0.41 4.89 6.99 -92.71 -0.65 4.24 16 44 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 45 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 46 H 0.28 15.27 8.31 -92.70 -0.77 14.50 16 47 H 0.08 0.95 7.59 -2.39 -0.02 0.93 16 48 H 0.12 0.98 4.05 -2.39 -0.01 0.97 16 Total: -1.00 -78.97 393.96 2.58 -76.39 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.28 Total: 11.20 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 6.31 Total: -1.31 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -4.74 Total: -82.59 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.12 Total: -39.94 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.90 Total: 45.92 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.05 Total: -9.68 kcal Total: -78.97 2.58 -76.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001748147147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.594 kcal (2) G-P(sol) polarization free energy of solvation -78.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds