Wall clock time and date at job start Sat Apr 11 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33001 * 119.99393 * 2 1 4 4 C 1.50691 * 119.99627 * 179.97438 * 3 2 1 5 5 C 1.47101 * 119.99811 * 0.02562 * 3 2 1 6 6 O 1.21607 * 120.00698 * 359.97438 * 5 3 2 7 7 N 1.34782 * 119.99394 * 179.97438 * 5 3 2 8 8 C 1.46499 * 119.99661 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.46752 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46881 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.88576 * 57.42721 * 10 9 8 12 12 C 1.55151 * 111.00571 * 181.35215 * 10 9 8 13 13 C 1.54338 * 103.02507 * 153.38046 * 12 10 9 14 14 N 1.47021 * 107.26155 * 338.14263 * 13 12 10 15 15 C 1.34781 * 125.64992 * 178.84864 * 14 13 12 16 16 O 1.21274 * 120.00344 * 179.69253 * 15 14 13 17 17 C 1.50701 * 119.99423 * 359.69048 * 15 14 13 18 18 S 1.81001 * 109.46896 * 180.02562 * 17 15 14 19 19 C 1.76201 * 99.99894 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00323 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99766 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46807 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.46906 * 300.00462 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47422 * 108.70588 * 358.58342 * 14 13 12 28 28 H 1.09006 * 109.46930 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47507 * 299.99367 * 1 2 3 30 30 H 1.08996 * 109.47204 * 60.00161 * 1 2 3 31 31 H 1.07993 * 120.00516 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47737 * 269.99868 * 4 3 2 33 33 H 1.09001 * 109.47425 * 29.99994 * 4 3 2 34 34 H 1.09005 * 109.47428 * 150.00221 * 4 3 2 35 35 H 0.97000 * 120.00072 * 359.97438 * 7 5 3 36 36 H 1.09006 * 109.46925 * 60.00617 * 8 7 5 37 37 H 1.08992 * 109.47367 * 300.00036 * 8 7 5 38 38 H 1.08995 * 109.47200 * 60.00709 * 9 8 7 39 39 H 1.08995 * 109.47162 * 299.99810 * 9 8 7 40 40 H 1.09003 * 110.72492 * 271.94110 * 12 10 9 41 41 H 1.09003 * 110.72257 * 35.03545 * 12 10 9 42 42 H 1.08996 * 109.99183 * 218.66499 * 13 12 10 43 43 H 1.08998 * 109.77679 * 97.49207 * 13 12 10 44 44 H 1.09001 * 109.47454 * 60.00304 * 17 15 14 45 45 H 1.09003 * 109.47322 * 299.99933 * 17 15 14 46 46 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 47 47 H 1.09003 * 110.37421 * 143.19407 * 27 14 13 48 48 H 1.08997 * 110.36947 * 265.51777 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 3.6788 1.1520 0.0006 5 6 1.4362 2.4257 0.0006 6 8 0.2202 2.4257 0.0006 7 7 2.1101 3.5930 0.0011 8 6 1.3775 4.8617 0.0011 9 6 2.3717 6.0246 0.0024 10 6 1.6066 7.3496 0.0030 11 1 0.9371 7.4113 0.8610 12 6 2.5825 8.5554 -0.0298 13 6 1.7431 9.6641 -0.6992 14 7 0.6733 9.0021 -1.4600 15 6 -0.2875 9.6261 -2.1701 16 8 -1.1199 8.9761 -2.7661 17 6 -0.3272 11.1317 -2.2233 18 16 -1.7221 11.6625 -3.2473 19 6 -1.5332 13.4110 -3.1389 20 1 -0.7260 13.8320 -2.5580 21 6 -2.4219 14.2474 -3.8003 22 7 -3.4061 13.7343 -4.5079 23 14 -2.2220 16.1011 -3.6848 24 1 -3.2903 16.7642 -4.4750 25 1 -2.3223 16.5222 -2.2644 26 1 -0.8943 16.4903 -4.2240 27 6 0.8292 7.5426 -1.3229 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.0471 -0.9352 -0.0004 32 1 4.0419 1.1522 1.0283 33 1 4.0425 0.2619 -0.5129 34 1 4.0424 2.0419 -0.5133 35 1 3.0801 3.5930 0.0015 36 1 0.7505 4.9192 0.8910 37 1 0.7512 4.9196 -0.8890 38 1 2.9990 5.9674 -0.8872 39 1 2.9977 5.9665 0.8928 40 1 2.8723 8.8447 0.9803 41 1 3.4621 8.3234 -0.6303 42 1 2.3687 10.2501 -1.3724 43 1 1.3097 10.3103 0.0641 44 1 0.6024 11.5047 -2.6533 45 1 -0.4457 11.5279 -1.2148 46 1 -4.0273 14.3188 -4.9698 47 1 -0.1467 7.0606 -1.2640 48 1 1.4011 7.1418 -2.1598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001059197821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:46 Heat of formation + Delta-G solvation = -94.971616 kcal Electronic energy + Delta-G solvation = -26118.225055 eV Core-core repulsion = 22298.064295 eV Total energy + Delta-G solvation = -3820.160760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19274 -40.87891 -38.84866 -36.64272 -35.86214 -34.60338 -34.08552 -31.64652 -30.86957 -30.55789 -28.36588 -27.64860 -25.91847 -25.23099 -23.68237 -22.57316 -21.46012 -20.72655 -20.13308 -19.57837 -18.08638 -17.58598 -17.25397 -16.89692 -16.83373 -16.74975 -16.44790 -15.94138 -15.56424 -15.23102 -15.10917 -14.74140 -14.54160 -14.39483 -14.24544 -13.91623 -13.74267 -13.65194 -13.58933 -13.49278 -13.26804 -13.16864 -13.09056 -12.87116 -12.83621 -12.64428 -12.38161 -12.33312 -12.01982 -11.76573 -11.64858 -11.55617 -11.14093 -11.00809 -10.60445 -10.31133 -10.26139 -9.79815 -9.71530 -8.71062 -8.35753 -6.15597 0.43653 1.22356 1.43667 1.43971 1.52591 1.54574 2.07813 2.25691 2.26338 2.26529 2.98161 3.20735 3.42642 3.62156 3.77496 3.83171 3.85952 3.96426 4.12874 4.20262 4.26166 4.32563 4.37245 4.39582 4.43730 4.49178 4.54734 4.67212 4.74449 4.78114 4.83175 4.87300 4.89913 4.91589 5.02634 5.06555 5.07796 5.17931 5.26763 5.33643 5.39496 5.43581 5.44799 5.54110 5.65992 6.17957 6.37284 6.59826 7.04666 7.08420 7.27748 8.73415 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025379 B = 0.001674 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.019114 B =16720.337728 C =17604.696135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 C -0.207 4.207 4 C -0.110 4.110 5 C 0.533 3.467 6 O -0.583 6.583 7 N -0.714 5.714 8 C 0.115 3.885 9 C -0.102 4.102 10 C -0.087 4.087 11 H 0.088 0.912 12 C -0.109 4.109 13 C 0.086 3.914 14 N -0.619 5.619 15 C 0.542 3.458 16 O -0.572 6.572 17 C -0.118 4.118 18 S -0.155 6.155 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.002 2.998 24 H -0.279 1.279 25 H -0.261 1.261 26 H -0.261 1.261 27 C 0.101 3.899 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.157 0.843 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.416 0.584 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.272 0.728 47 H 0.049 0.951 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.266 -23.247 15.560 37.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.089 4.089 3 C -0.210 4.210 4 C -0.166 4.166 5 C 0.324 3.676 6 O -0.465 6.465 7 N -0.367 5.367 8 C -0.009 4.009 9 C -0.140 4.140 10 C -0.107 4.107 11 H 0.106 0.894 12 C -0.146 4.146 13 C -0.036 4.036 14 N -0.353 5.353 15 C 0.330 3.670 16 O -0.451 6.451 17 C -0.269 4.269 18 S 0.072 5.928 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.823 3.177 24 H -0.204 1.204 25 H -0.186 1.186 26 H -0.185 1.185 27 C -0.021 4.021 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.175 0.825 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.255 0.745 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 22.014 -24.098 14.539 35.731 hybrid contribution 0.370 1.810 0.195 1.858 sum 22.385 -22.288 14.734 34.856 Atomic orbital electron populations 1.20960 0.93374 1.01528 1.02064 1.23920 0.96341 0.98099 0.90498 1.21686 0.98207 0.91748 1.09404 1.20812 0.88046 1.04180 1.03585 1.19074 0.87032 0.85663 0.75847 1.90804 1.15773 1.88295 1.51629 1.45846 1.11149 1.04952 1.74800 1.21372 0.95416 0.83051 1.01097 1.21645 0.97063 0.89878 1.05394 1.22262 0.97249 0.95637 0.95552 0.89386 1.22705 0.97117 0.91697 1.03097 1.22433 0.88451 0.97250 0.95481 1.48491 1.28827 1.08247 1.49757 1.19848 0.80003 0.89259 0.77885 1.90687 1.40416 1.67987 1.45993 1.23292 1.04199 0.94255 1.05144 1.85637 1.36163 1.06414 1.64585 1.23162 1.18091 0.90880 1.37378 0.89791 1.26179 0.93760 1.05574 0.93675 1.70191 1.15839 1.37982 1.30802 0.84964 0.78467 0.75350 0.78956 1.20361 1.18562 1.18499 1.22495 1.00333 0.80044 0.99212 0.90984 0.92250 0.92573 0.82540 0.89833 0.89778 0.90714 0.74548 0.92583 0.93791 0.89272 0.87482 0.86956 0.88354 0.90301 0.90629 0.87441 0.87569 0.91955 0.93211 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 8.45 71.24 0.60 -1.52 16 2 C -0.07 -0.85 9.95 24.52 0.24 -0.61 16 3 C -0.21 -2.66 6.00 -18.71 -0.11 -2.77 16 4 C -0.11 -0.50 9.61 71.23 0.68 0.19 16 5 C 0.53 10.43 7.72 86.57 0.67 11.10 16 6 O -0.58 -16.81 13.07 -4.05 -0.05 -16.87 16 7 N -0.71 -9.43 5.50 -466.71 -2.57 -12.00 16 8 C 0.11 1.75 5.52 86.38 0.48 2.23 16 9 C -0.10 -0.80 4.84 30.60 0.15 -0.65 16 10 C -0.09 -1.12 3.08 -9.40 -0.03 -1.15 16 11 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 12 C -0.11 -1.01 6.42 31.79 0.20 -0.80 16 13 C 0.09 1.54 6.49 86.73 0.56 2.10 16 14 N -0.62 -17.76 3.33 -811.78 -2.70 -20.46 16 15 C 0.54 22.13 7.87 87.66 0.69 22.82 16 16 O -0.57 -29.15 16.12 -3.01 -0.05 -29.20 16 17 C -0.12 -4.98 5.35 71.24 0.38 -4.59 16 18 S -0.16 -8.96 20.57 -56.49 -1.16 -10.12 16 19 C -0.55 -31.88 9.50 67.96 0.65 -31.23 16 20 H 0.08 4.50 7.80 -2.92 -0.02 4.48 16 21 C 0.01 0.74 5.49 84.86 0.47 1.21 16 22 N -0.91 -57.02 13.22 21.65 0.29 -56.73 16 23 Si 1.00 43.94 29.55 68.60 2.03 45.97 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 27 C 0.10 2.39 5.56 86.86 0.48 2.88 16 28 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 30 H 0.06 1.25 7.22 -2.39 -0.02 1.24 16 31 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.08 0.20 8.07 -2.39 -0.02 0.18 16 34 H 0.07 0.17 6.71 -2.38 -0.02 0.16 16 35 H 0.42 2.43 6.57 -92.71 -0.61 1.82 16 36 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.04 0.93 7.46 -2.39 -0.02 0.91 16 38 H 0.09 0.52 8.10 -2.39 -0.02 0.50 16 39 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.10 0.60 8.04 -2.39 -0.02 0.58 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 45 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 46 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 47 H 0.05 1.47 7.96 -2.39 -0.02 1.45 16 48 H 0.07 1.60 8.00 -2.39 -0.02 1.58 16 Total: -1.00 -89.14 405.47 2.23 -86.91 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.34 Total: 13.30 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 6.12 Total: -0.80 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -4.98 Total: -89.19 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.10 Total: -46.06 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.16 Total: -10.12 kcal Total: -89.14 2.23 -86.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059197821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.063 kcal (2) G-P(sol) polarization free energy of solvation -89.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds