Wall clock time and date at job start Sat Apr 11 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32995 * 120.00109 * 2 1 4 4 C 1.50697 * 119.99988 * 0.02562 * 3 2 1 5 5 C 1.47108 * 119.99872 * 180.02562 * 3 2 1 6 6 O 1.21609 * 120.00137 * 259.85722 * 5 3 2 7 7 N 1.34772 * 119.99685 * 79.85645 * 5 3 2 8 8 C 1.47026 * 125.65061 * 355.02911 * 7 5 3 9 9 C 1.54374 * 107.28751 * 181.05607 * 8 7 5 10 10 C 1.55158 * 102.92016 * 22.14171 * 9 8 7 11 11 H 1.08993 * 111.00432 * 82.63974 * 10 9 8 12 12 C 1.52999 * 111.00141 * 206.45004 * 10 9 8 13 13 C 1.52999 * 109.46851 * 181.81994 * 12 10 9 14 14 N 1.46502 * 109.46952 * 180.02562 * 13 12 10 15 15 C 1.34780 * 119.99865 * 179.97438 * 14 13 12 16 16 O 1.21284 * 119.99970 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99932 * 179.97438 * 15 14 13 18 18 S 1.81003 * 109.47317 * 180.02562 * 17 15 14 19 19 C 1.76196 * 99.99932 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00651 * 359.97438 * 19 18 17 21 21 C 1.38807 * 119.99845 * 179.72641 * 19 18 17 22 22 N 1.31622 * 120.00256 * 180.27495 * 21 19 18 23 23 Si 1.86807 * 119.99844 * 0.27087 * 21 19 18 24 24 H 1.48494 * 109.46903 * 90.00003 * 23 21 19 25 25 H 1.48492 * 109.46916 * 210.00485 * 23 21 19 26 26 H 1.48504 * 109.47168 * 330.00189 * 23 21 19 27 27 C 1.47425 * 125.64745 * 174.99033 * 7 5 3 28 28 H 1.09003 * 109.47083 * 299.99975 * 1 2 3 29 29 H 1.09000 * 109.47171 * 59.99298 * 1 2 3 30 30 H 1.08996 * 109.47567 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99940 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47486 * 275.05641 * 4 3 2 33 33 H 1.08995 * 109.46860 * 35.06118 * 4 3 2 34 34 H 1.09003 * 109.46915 * 155.05842 * 4 3 2 35 35 H 1.08996 * 109.88254 * 300.44246 * 8 7 5 36 36 H 1.09001 * 109.87992 * 61.45406 * 8 7 5 37 37 H 1.08998 * 110.70499 * 263.79258 * 9 8 7 38 38 H 1.08995 * 110.75465 * 140.51081 * 9 8 7 39 39 H 1.09004 * 109.47136 * 61.82225 * 12 10 9 40 40 H 1.08994 * 109.47335 * 301.82165 * 12 10 9 41 41 H 1.08994 * 109.47620 * 60.00247 * 13 12 10 42 42 H 1.09003 * 109.47162 * 299.99951 * 13 12 10 43 43 H 0.96997 * 120.00238 * 0.02562 * 14 13 12 44 44 H 1.09004 * 109.47003 * 60.00550 * 17 15 14 45 45 H 1.09003 * 109.47162 * 300.00350 * 17 15 14 46 46 H 0.97003 * 120.00270 * 179.97438 * 22 21 19 47 47 H 1.08996 * 110.36569 * 37.06899 * 27 7 5 48 48 H 1.09001 * 110.36799 * 274.74135 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2515 1.3369 1.0359 7 7 4.3164 0.9464 -1.1498 8 6 3.7135 0.6093 -2.4477 9 6 4.8670 0.4437 -3.4602 10 6 6.0868 0.1418 -2.5501 11 1 6.1203 -0.9133 -2.2789 12 6 7.3920 0.5741 -3.2212 13 6 8.5730 0.2198 -2.3152 14 7 9.8227 0.6343 -2.9575 15 6 11.0011 0.4220 -2.3387 16 8 11.0269 -0.1127 -1.2504 17 6 12.2867 0.8478 -2.9997 18 16 13.6838 0.4288 -1.9279 19 6 15.0164 1.0208 -2.9169 20 1 14.8167 1.4771 -3.8752 21 6 16.3228 0.9054 -2.4622 22 7 17.3180 1.3525 -3.1985 23 14 16.6685 0.1155 -0.8050 24 1 16.8648 -1.3455 -0.9844 25 1 17.8958 0.7116 -0.2190 26 1 15.5197 0.3525 0.1057 27 6 5.7795 1.0234 -1.3139 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 2.0470 -0.9353 -0.0004 32 1 1.1580 2.7265 -1.0229 33 1 0.5086 2.3508 0.5912 34 1 2.0440 3.2373 0.4339 35 1 3.1558 -0.3236 -2.3663 36 1 3.0487 1.4118 -2.7672 37 1 5.0229 1.3653 -4.0209 38 1 4.6727 -0.3907 -4.1341 39 1 7.3743 1.6508 -3.3905 40 1 7.4984 0.0580 -4.1753 41 1 8.5908 -0.8568 -2.1458 42 1 8.4666 0.7360 -1.3611 43 1 9.8021 1.0622 -3.8278 44 1 12.2687 1.9244 -3.1694 45 1 12.3933 0.3313 -3.9536 46 1 18.2309 1.2721 -2.8806 47 1 6.2815 0.6273 -0.4313 48 1 6.0871 2.0530 -1.4965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059433709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:07 Heat of formation + Delta-G solvation = -72.385301 kcal Electronic energy + Delta-G solvation = -25989.825266 eV Core-core repulsion = 22170.643922 eV Total energy + Delta-G solvation = -3819.181344 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.63772 -39.31492 -38.25480 -36.07167 -35.36366 -33.04252 -32.43220 -30.74865 -29.92198 -29.45698 -27.89994 -26.47947 -25.60404 -24.47878 -22.62668 -21.39497 -20.82400 -20.25495 -18.78617 -17.87010 -17.28165 -16.87095 -16.30194 -15.97358 -15.94685 -15.78587 -15.19640 -14.95032 -14.50051 -14.34332 -14.00253 -13.86466 -13.69450 -13.58734 -13.33972 -13.26492 -13.09967 -12.79452 -12.76182 -12.71605 -12.54941 -12.46881 -12.16520 -11.85470 -11.77123 -11.51200 -11.25249 -11.16661 -11.06797 -10.99758 -10.59086 -10.24527 -9.84718 -9.52244 -9.48142 -9.07802 -9.01721 -8.95961 -8.48951 -6.91031 -6.28367 -4.00020 1.27341 2.20226 2.60594 2.77622 2.98704 3.30755 3.34898 3.52129 3.64685 3.83521 4.04372 4.21184 4.29026 4.34215 4.44709 4.62148 4.70113 4.71419 4.79977 4.83082 4.87817 4.91627 4.99518 5.05794 5.10866 5.13887 5.16289 5.22014 5.28539 5.31873 5.34385 5.36321 5.42000 5.44160 5.52464 5.64422 5.75938 5.79311 5.83513 5.89879 5.95145 6.01545 6.08309 6.52232 7.05416 7.60661 7.73861 7.94630 8.41925 8.49983 9.17981 10.80816 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028374 B = 0.001597 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.598712 B =17525.550735 C =18069.464161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.118 4.118 3 C -0.163 4.163 4 C -0.105 4.105 5 C 0.570 3.430 6 O -0.532 6.532 7 N -0.616 5.616 8 C 0.103 3.897 9 C -0.127 4.127 10 C -0.097 4.097 11 H 0.091 0.909 12 C -0.119 4.119 13 C 0.118 3.882 14 N -0.738 5.738 15 C 0.529 3.471 16 O -0.519 6.519 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.105 3.895 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.399 0.601 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.083 0.917 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.420 -0.800 -3.070 37.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.137 4.137 3 C -0.166 4.166 4 C -0.162 4.162 5 C 0.359 3.641 6 O -0.408 6.408 7 N -0.350 5.350 8 C -0.020 4.020 9 C -0.165 4.165 10 C -0.117 4.117 11 H 0.109 0.891 12 C -0.157 4.157 13 C -0.006 4.006 14 N -0.393 5.393 15 C 0.315 3.685 16 O -0.393 6.393 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.017 4.017 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.233 0.767 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.102 0.898 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -36.900 -1.545 -0.621 36.938 hybrid contribution 0.454 0.492 -1.180 1.357 sum -36.446 -1.052 -1.801 36.506 Atomic orbital electron populations 1.20887 0.91894 1.02883 1.02461 1.23249 0.96667 0.96677 0.97122 1.21368 0.92213 0.97322 1.05684 1.20685 0.99714 0.93429 1.02366 1.18232 0.87642 0.76070 0.82148 1.90859 1.69898 1.49044 1.30979 1.48510 1.07858 1.69862 1.08789 1.22038 0.96414 1.00762 0.82802 1.22721 0.93522 1.03184 0.97036 1.22310 0.94096 1.00602 0.94659 0.89106 1.21736 0.92471 1.02339 0.99173 1.21321 0.82398 1.00564 0.96306 1.45951 1.05706 1.64290 1.23310 1.20292 0.84544 0.78121 0.85537 1.90710 1.86934 1.41329 1.20348 1.23280 0.95493 1.04960 1.03742 1.84817 0.97756 1.80846 1.28166 1.22321 0.91464 1.45894 1.07270 0.89396 1.24707 0.94939 0.94072 0.97526 1.69934 0.99491 1.44697 1.37588 0.86740 0.80084 0.80420 0.84653 1.19208 1.19927 1.15894 1.22421 0.80198 1.00195 0.98905 0.90903 0.90965 0.91564 0.86867 0.90874 0.90682 0.91485 0.91310 0.91215 0.90065 0.89580 0.90677 0.90343 0.91513 0.91482 0.76687 0.88464 0.88505 0.91945 0.89811 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.43 8.98 36.00 0.32 -0.11 16 2 C -0.12 -0.70 9.93 -36.13 -0.36 -1.06 16 3 C -0.16 -1.24 4.94 -102.84 -0.51 -1.75 16 4 C -0.11 -0.59 9.46 36.00 0.34 -0.25 16 5 C 0.57 6.18 7.19 -12.66 -0.09 6.09 16 6 O -0.53 -8.22 17.34 5.27 0.09 -8.13 16 7 N -0.62 -5.20 3.33 -171.88 -0.57 -5.77 16 8 C 0.10 0.51 6.45 -3.04 -0.02 0.49 16 9 C -0.13 -0.49 6.42 -24.87 -0.16 -0.65 16 10 C -0.10 -0.57 3.04 -88.47 -0.27 -0.83 16 11 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 12 C -0.12 -0.72 4.84 -26.73 -0.13 -0.85 16 13 C 0.12 1.21 5.55 -4.04 -0.02 1.19 16 14 N -0.74 -8.93 5.56 -60.29 -0.33 -9.27 16 15 C 0.53 9.37 7.85 -10.99 -0.09 9.29 16 16 O -0.52 -11.37 15.86 5.55 0.09 -11.28 16 17 C -0.12 -2.39 6.16 36.00 0.22 -2.17 16 18 S -0.14 -3.64 18.54 -107.50 -1.99 -5.63 16 19 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 20 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 21 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -26.65 13.97 55.49 0.78 -25.88 16 23 Si 0.86 21.97 27.74 -169.99 -4.72 17.25 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.23 -6.04 6.73 56.52 0.38 -5.66 16 27 C 0.10 0.89 5.73 -2.53 -0.01 0.87 16 28 H 0.07 0.25 7.41 -51.93 -0.38 -0.14 16 29 H 0.07 0.18 8.10 -51.93 -0.42 -0.24 16 30 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.11 0.69 8.05 -52.49 -0.42 0.26 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.32 6.70 -51.93 -0.35 -0.02 16 34 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.27 8.04 -51.93 -0.42 -0.14 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.41 8.04 -51.93 -0.42 -0.01 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.78 7.59 -51.93 -0.39 0.39 16 43 H 0.40 3.56 8.47 -40.82 -0.35 3.21 16 44 H 0.10 1.74 8.14 -51.91 -0.42 1.31 16 45 H 0.10 1.72 8.14 -51.91 -0.42 1.29 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 47 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 48 H 0.07 0.61 7.96 -51.93 -0.41 0.19 16 LS Contribution 409.51 15.07 6.17 6.17 Total: -1.00 -37.76 409.51 -9.25 -47.01 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -8.20 Total: -2.66 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -0.56 Total: -1.81 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: -0.13 Total: -40.91 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.18 Total: -19.41 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.25 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.76 -9.25 -47.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059433709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.376 kcal (2) G-P(sol) polarization free energy of solvation -37.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds