Wall clock time and date at job start Sat Apr 11 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32991 * 120.00006 * 2 1 4 4 C 1.50705 * 120.00267 * 0.02562 * 3 2 1 5 5 C 1.47101 * 120.00052 * 179.97438 * 3 2 1 6 6 O 1.21615 * 119.99893 * 335.48259 * 5 3 2 7 7 N 1.34775 * 120.00423 * 155.47949 * 5 3 2 8 8 C 1.46935 * 120.62831 * 353.60266 * 7 5 3 9 9 C 1.53182 * 108.77553 * 233.63153 * 8 7 5 10 10 C 1.53040 * 109.31498 * 305.36163 * 9 8 7 11 11 H 1.08990 * 109.46446 * 301.34928 * 10 9 8 12 12 N 1.46500 * 109.46181 * 181.37151 * 10 9 8 13 13 C 1.34775 * 119.99810 * 84.97678 * 12 10 9 14 14 O 1.21284 * 119.99886 * 359.97438 * 13 12 10 15 15 C 1.50697 * 119.99947 * 180.02562 * 13 12 10 16 16 S 1.81002 * 109.47277 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00416 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99434 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00050 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99985 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00251 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46848 * 90.00373 * 21 19 17 23 23 H 1.48496 * 109.47260 * 210.00142 * 21 19 17 24 24 H 1.48502 * 109.46857 * 330.00525 * 21 19 17 25 25 C 1.53044 * 109.53534 * 61.36931 * 10 9 8 26 26 H 1.09005 * 109.49670 * 58.58243 * 25 10 9 27 27 C 1.52996 * 109.49891 * 178.68167 * 25 10 9 28 28 C 1.46924 * 120.63564 * 173.62689 * 7 5 3 29 29 H 1.09004 * 109.46885 * 59.99599 * 1 2 3 30 30 H 1.08994 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47134 * 299.99901 * 1 2 3 32 32 H 1.07996 * 119.99967 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.47168 * 277.16307 * 4 3 2 34 34 H 1.09007 * 109.46617 * 37.16004 * 4 3 2 35 35 H 1.09001 * 109.47169 * 157.15654 * 4 3 2 36 36 H 1.09001 * 109.58282 * 113.83876 * 8 7 5 37 37 H 1.09006 * 109.69944 * 353.49107 * 8 7 5 38 38 H 1.09005 * 109.49507 * 185.41194 * 9 8 7 39 39 H 1.08999 * 109.50055 * 65.31924 * 9 8 7 40 40 H 0.97001 * 120.00200 * 264.97602 * 12 10 9 41 41 H 1.09006 * 109.47230 * 299.99470 * 15 13 12 42 42 H 1.09001 * 109.47520 * 59.99769 * 15 13 12 43 43 H 0.97002 * 120.00108 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.46666 * 60.00164 * 27 25 10 45 45 H 1.08999 * 109.47274 * 179.97438 * 27 25 10 46 46 H 1.08999 * 109.47211 * 299.99737 * 27 25 10 47 47 H 1.08993 * 109.58581 * 246.15746 * 28 7 5 48 48 H 1.08997 * 109.58417 * 6.58504 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4569 0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2509 0.1936 0.4381 7 7 4.3171 2.2135 -0.4838 8 6 3.6036 3.3164 -1.1423 9 6 4.2245 3.5505 -2.5230 10 6 5.7298 3.7792 -2.3689 11 1 5.9022 4.6372 -1.7193 12 7 6.3217 4.0360 -3.6842 13 6 6.3147 5.2834 -4.1943 14 8 5.8180 6.1933 -3.5647 15 6 6.9229 5.5475 -5.5475 16 16 6.7593 7.3046 -5.9502 17 6 7.5307 7.3288 -7.5341 18 1 7.9255 6.4165 -7.9564 19 6 7.6318 8.5203 -8.2387 20 7 8.2076 8.5383 -9.4222 21 14 6.9494 10.0983 -7.5079 22 1 8.0048 10.7701 -6.7079 23 1 6.5082 11.0002 -8.6020 24 1 5.7929 9.7789 -6.6329 25 6 6.3759 2.5358 -1.7534 26 1 6.1827 1.6724 -2.3901 27 6 7.8854 2.7527 -1.6301 28 6 5.7795 2.2901 -0.3639 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.0470 -0.9353 -0.0004 33 1 1.1255 2.7078 -1.0189 34 1 0.5278 2.3619 0.6217 35 1 2.0572 3.2450 0.3995 36 1 3.6959 4.2213 -0.5418 37 1 2.5506 3.0578 -1.2541 38 1 3.7685 4.4273 -2.9829 39 1 4.0516 2.6776 -3.1524 40 1 6.7185 3.3082 -4.1879 41 1 7.9785 5.2759 -5.5307 42 1 6.4065 4.9522 -6.3005 43 1 8.2779 9.3710 -9.9148 44 1 8.0776 3.6153 -0.9921 45 1 8.3451 1.8671 -1.1913 46 1 8.3089 2.9303 -2.6186 47 1 6.0491 3.1114 0.2999 48 1 6.1627 1.3520 0.0375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073745008.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:06 Heat of formation + Delta-G solvation = -51.795427 kcal Electronic energy + Delta-G solvation = -27393.111126 eV Core-core repulsion = 23574.822626 eV Total energy + Delta-G solvation = -3818.288500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.94635 -39.54702 -37.76743 -36.17000 -34.90969 -33.12379 -32.45764 -31.53924 -30.10058 -29.15764 -27.02118 -26.82293 -25.65395 -24.82330 -22.71942 -21.59321 -20.54058 -20.12956 -18.69415 -17.87097 -17.05645 -16.64344 -16.50491 -16.10769 -15.78281 -15.12880 -15.01861 -14.91482 -14.59810 -14.19148 -14.06749 -13.99555 -13.56574 -13.49692 -13.27842 -13.22302 -13.11401 -12.89288 -12.81421 -12.63603 -12.31388 -12.13872 -11.83957 -11.75791 -11.61641 -11.32366 -11.28350 -11.05744 -11.01350 -10.76402 -10.57810 -10.09301 -9.87942 -9.58383 -9.48075 -9.04263 -8.99366 -8.90474 -8.52713 -6.94099 -6.30813 -4.02758 1.04064 2.61977 2.72116 2.87589 2.93267 3.28057 3.32093 3.48061 3.62648 4.09402 4.28545 4.30982 4.45874 4.47767 4.56144 4.70305 4.72843 4.76204 4.82743 4.92908 4.99769 5.02120 5.08159 5.10695 5.17660 5.24955 5.26735 5.34519 5.39137 5.41206 5.45511 5.50718 5.55629 5.59186 5.73454 5.73905 5.80038 5.92971 5.98605 5.98853 6.05055 6.09857 6.25645 6.52490 7.07733 7.58241 7.85689 7.92195 8.39798 8.45780 9.15238 10.78392 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.002179 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.749687 B =12846.619527 C =13586.193483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.191 4.191 4 C -0.123 4.123 5 C 0.558 3.442 6 O -0.547 6.547 7 N -0.607 5.607 8 C 0.080 3.920 9 C -0.148 4.148 10 C 0.153 3.847 11 H 0.090 0.910 12 N -0.731 5.731 13 C 0.533 3.467 14 O -0.519 6.519 15 C -0.125 4.125 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.111 4.111 26 H 0.079 0.921 27 C -0.146 4.146 28 C 0.120 3.880 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.399 0.601 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.497 -16.887 19.714 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C -0.194 4.194 4 C -0.178 4.178 5 C 0.348 3.652 6 O -0.426 6.426 7 N -0.339 5.339 8 C -0.043 4.043 9 C -0.187 4.187 10 C 0.047 3.953 11 H 0.108 0.892 12 N -0.384 5.384 13 C 0.319 3.681 14 O -0.394 6.394 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.131 4.131 26 H 0.098 0.902 27 C -0.204 4.204 28 C -0.003 4.003 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.141 0.859 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.233 0.767 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.930 -15.738 20.833 29.136 hybrid contribution 0.781 -0.581 -1.119 1.483 sum -12.149 -16.319 19.714 28.330 Atomic orbital electron populations 1.20990 0.91958 1.03142 1.02692 1.23525 0.96390 0.97612 0.92022 1.21372 0.92633 0.96855 1.08527 1.21199 1.00141 0.94430 1.02071 1.18484 0.87803 0.81674 0.77246 1.90777 1.70098 1.33862 1.47874 1.47998 1.07372 1.20579 1.57947 1.22721 0.99013 0.89577 0.92958 1.22378 0.96175 1.03129 0.97019 1.20900 0.91689 0.97673 0.85019 0.89201 1.46034 1.62169 1.10217 1.20002 1.20273 0.78572 0.81986 0.87307 1.90691 1.44494 1.43398 1.60795 1.23287 1.03942 1.04353 0.95965 1.84764 1.78870 1.03186 1.24678 1.22314 1.43594 0.99505 1.01509 0.89411 1.24723 0.93814 0.98753 0.94077 1.69941 1.41747 1.27991 1.11977 0.86728 0.81714 0.83318 0.80035 1.19218 1.19952 1.15933 1.21770 0.96256 0.98067 0.97040 0.90229 1.21765 0.93708 1.02053 1.02836 1.21652 0.78980 1.03575 0.96127 0.90625 0.91378 0.90599 0.85912 0.90076 0.91109 0.90753 0.90873 0.86489 0.89546 0.91313 0.76716 0.88570 0.88529 0.91935 0.92138 0.92178 0.91714 0.91024 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.57 9.00 36.01 0.32 -0.25 16 2 C -0.08 -0.55 9.81 -36.13 -0.35 -0.90 16 3 C -0.19 -1.54 5.65 -102.84 -0.58 -2.12 16 4 C -0.12 -0.66 7.36 36.01 0.27 -0.39 16 5 C 0.56 6.04 7.46 -12.67 -0.09 5.94 16 6 O -0.55 -7.77 15.90 5.26 0.08 -7.69 16 7 N -0.61 -5.63 2.97 -174.16 -0.52 -6.15 16 8 C 0.08 0.62 4.70 -3.71 -0.02 0.61 16 9 C -0.15 -1.40 5.65 -26.62 -0.15 -1.55 16 10 C 0.15 1.58 1.88 -67.89 -0.13 1.46 16 11 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 12 N -0.73 -8.62 4.36 -53.77 -0.23 -8.86 16 13 C 0.53 8.86 7.81 -10.99 -0.09 8.78 16 14 O -0.52 -10.48 15.52 5.55 0.09 -10.39 16 15 C -0.12 -2.33 6.16 36.00 0.22 -2.11 16 16 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 17 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 18 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 19 C 0.09 2.76 5.50 -17.43 -0.10 2.66 16 20 N -0.88 -26.37 13.97 55.49 0.78 -25.60 16 21 Si 0.86 21.55 27.74 -169.99 -4.72 16.84 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 25 C -0.11 -0.96 2.46 -90.50 -0.22 -1.18 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 C -0.15 -1.19 9.03 37.16 0.34 -0.85 16 28 C 0.12 1.07 5.73 -3.71 -0.02 1.05 16 29 H 0.08 0.28 8.10 -51.93 -0.42 -0.14 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.28 7.42 -51.93 -0.39 -0.11 16 32 H 0.12 1.00 7.70 -52.49 -0.40 0.60 16 33 H 0.08 0.35 6.80 -51.93 -0.35 -0.01 16 34 H 0.07 0.30 6.79 -51.93 -0.35 -0.05 16 35 H 0.07 0.41 6.21 -51.93 -0.32 0.09 16 36 H 0.07 0.55 8.01 -51.93 -0.42 0.13 16 37 H 0.12 0.74 3.14 -52.71 -0.17 0.57 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.40 3.79 8.31 -40.82 -0.34 3.45 16 41 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 42 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.55 7.36 -51.93 -0.38 0.17 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.97 7.00 -51.93 -0.36 0.60 16 LS Contribution 392.23 15.07 5.91 5.91 Total: -1.00 -35.18 392.23 -8.58 -43.76 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -7.68 Total: 1.06 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -0.29 Total: -3.40 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.02 Total: -40.60 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.17 Total: -18.08 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.72 Total: 16.84 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.18 -8.58 -43.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745008.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.033 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds