Wall clock time and date at job start Sat Apr 11 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32991 * 120.00006 * 2 1 4 4 C 1.50705 * 120.00267 * 0.02562 * 3 2 1 5 5 C 1.47101 * 120.00052 * 179.97438 * 3 2 1 6 6 O 1.21615 * 119.99893 * 335.48259 * 5 3 2 7 7 N 1.34775 * 120.00423 * 155.47949 * 5 3 2 8 8 C 1.46935 * 120.62831 * 353.60266 * 7 5 3 9 9 C 1.53182 * 108.77553 * 233.63153 * 8 7 5 10 10 C 1.53040 * 109.31498 * 305.36163 * 9 8 7 11 11 H 1.08990 * 109.46446 * 301.34928 * 10 9 8 12 12 N 1.46500 * 109.46181 * 181.37151 * 10 9 8 13 13 C 1.34775 * 119.99810 * 84.97678 * 12 10 9 14 14 O 1.21284 * 119.99886 * 359.97438 * 13 12 10 15 15 C 1.50697 * 119.99947 * 180.02562 * 13 12 10 16 16 S 1.81002 * 109.47277 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00416 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99434 * 359.97438 * 17 16 15 19 19 C 1.38793 * 120.00050 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99985 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 120.00251 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46848 * 90.00373 * 21 19 17 23 23 H 1.48496 * 109.47260 * 210.00142 * 21 19 17 24 24 H 1.48502 * 109.46857 * 330.00525 * 21 19 17 25 25 C 1.53044 * 109.53534 * 61.36931 * 10 9 8 26 26 H 1.09005 * 109.49670 * 58.58243 * 25 10 9 27 27 C 1.52996 * 109.49891 * 178.68167 * 25 10 9 28 28 C 1.46924 * 120.63564 * 173.62689 * 7 5 3 29 29 H 1.09004 * 109.46885 * 59.99599 * 1 2 3 30 30 H 1.08994 * 109.47230 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47134 * 299.99901 * 1 2 3 32 32 H 1.07996 * 119.99967 * 180.02562 * 2 1 3 33 33 H 1.09003 * 109.47168 * 277.16307 * 4 3 2 34 34 H 1.09007 * 109.46617 * 37.16004 * 4 3 2 35 35 H 1.09001 * 109.47169 * 157.15654 * 4 3 2 36 36 H 1.09001 * 109.58282 * 113.83876 * 8 7 5 37 37 H 1.09006 * 109.69944 * 353.49107 * 8 7 5 38 38 H 1.09005 * 109.49507 * 185.41194 * 9 8 7 39 39 H 1.08999 * 109.50055 * 65.31924 * 9 8 7 40 40 H 0.97001 * 120.00200 * 264.97602 * 12 10 9 41 41 H 1.09006 * 109.47230 * 299.99470 * 15 13 12 42 42 H 1.09001 * 109.47520 * 59.99769 * 15 13 12 43 43 H 0.97002 * 120.00108 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.46666 * 60.00164 * 27 25 10 45 45 H 1.08999 * 109.47274 * 179.97438 * 27 25 10 46 46 H 1.08999 * 109.47211 * 299.99737 * 27 25 10 47 47 H 1.08993 * 109.58581 * 246.15746 * 28 7 5 48 48 H 1.08997 * 109.58417 * 6.58504 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4569 0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2509 0.1936 0.4381 7 7 4.3171 2.2135 -0.4838 8 6 3.6036 3.3164 -1.1423 9 6 4.2245 3.5505 -2.5230 10 6 5.7298 3.7792 -2.3689 11 1 5.9022 4.6372 -1.7193 12 7 6.3217 4.0360 -3.6842 13 6 6.3147 5.2834 -4.1943 14 8 5.8180 6.1933 -3.5647 15 6 6.9229 5.5475 -5.5475 16 16 6.7593 7.3046 -5.9502 17 6 7.5307 7.3288 -7.5341 18 1 7.9255 6.4165 -7.9564 19 6 7.6318 8.5203 -8.2387 20 7 8.2076 8.5383 -9.4222 21 14 6.9494 10.0983 -7.5079 22 1 8.0048 10.7701 -6.7079 23 1 6.5082 11.0002 -8.6020 24 1 5.7929 9.7789 -6.6329 25 6 6.3759 2.5358 -1.7534 26 1 6.1827 1.6724 -2.3901 27 6 7.8854 2.7527 -1.6301 28 6 5.7795 2.2901 -0.3639 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.0470 -0.9353 -0.0004 33 1 1.1255 2.7078 -1.0189 34 1 0.5278 2.3619 0.6217 35 1 2.0572 3.2450 0.3995 36 1 3.6959 4.2213 -0.5418 37 1 2.5506 3.0578 -1.2541 38 1 3.7685 4.4273 -2.9829 39 1 4.0516 2.6776 -3.1524 40 1 6.7185 3.3082 -4.1879 41 1 7.9785 5.2759 -5.5307 42 1 6.4065 4.9522 -6.3005 43 1 8.2779 9.3710 -9.9148 44 1 8.0776 3.6153 -0.9921 45 1 8.3451 1.8671 -1.1913 46 1 8.3089 2.9303 -2.6186 47 1 6.0491 3.1114 0.2999 48 1 6.1627 1.3520 0.0375 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073745008.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:06 Heat of formation + Delta-G solvation = -74.846272 kcal Electronic energy + Delta-G solvation = -27394.110686 eV Core-core repulsion = 23574.822626 eV Total energy + Delta-G solvation = -3819.288060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.76589 -40.68330 -38.75216 -36.79554 -35.83472 -34.66747 -33.99040 -32.54200 -30.57234 -30.47548 -27.88049 -27.61027 -27.46658 -25.62469 -23.50687 -22.32485 -21.70439 -21.02186 -19.82838 -19.31586 -17.93988 -17.82579 -17.39495 -17.18053 -17.01317 -16.59547 -16.32167 -15.89051 -15.57974 -15.34401 -14.99386 -14.85269 -14.75173 -14.57213 -14.33396 -14.05549 -13.98886 -13.65044 -13.56347 -13.35046 -13.33373 -13.25393 -13.01529 -12.95158 -12.70324 -12.51554 -12.34607 -12.20657 -12.03370 -11.87132 -11.77340 -11.52641 -11.16633 -11.00433 -10.84648 -10.52961 -10.12407 -10.02842 -9.66225 -8.98208 -8.50993 -6.21554 0.42015 0.99916 1.32268 1.47255 1.56667 1.58577 1.89548 2.10699 2.24093 2.27865 2.72192 2.87226 3.40496 3.55882 3.74613 3.81340 3.87168 3.97587 4.03311 4.18291 4.23845 4.25537 4.29407 4.39490 4.48012 4.50235 4.59094 4.63468 4.67806 4.70741 4.75699 4.80516 4.87486 4.90737 5.01128 5.04228 5.07563 5.15976 5.17877 5.28940 5.42374 5.47583 5.52623 5.65794 5.71018 6.11964 6.33557 6.47290 6.94067 7.06949 7.20362 8.61362 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.002179 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.749687 B =12846.619527 C =13586.193483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C -0.206 4.206 4 C -0.120 4.120 5 C 0.549 3.451 6 O -0.591 6.591 7 N -0.604 5.604 8 C 0.082 3.918 9 C -0.142 4.142 10 C 0.152 3.848 11 H 0.075 0.925 12 N -0.707 5.707 13 C 0.540 3.460 14 O -0.557 6.557 15 C -0.113 4.113 16 S -0.171 6.171 17 C -0.530 4.530 18 H 0.061 0.939 19 C 0.043 3.957 20 N -0.918 5.918 21 Si 0.916 3.084 22 H -0.263 1.263 23 H -0.260 1.260 24 H -0.234 1.234 25 C -0.098 4.098 26 H 0.082 0.918 27 C -0.145 4.145 28 C 0.118 3.882 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.138 0.862 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.413 0.587 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.277 0.723 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.158 -17.172 20.854 30.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.209 4.209 4 C -0.176 4.176 5 C 0.342 3.658 6 O -0.473 6.473 7 N -0.335 5.335 8 C -0.039 4.039 9 C -0.182 4.182 10 C 0.047 3.953 11 H 0.094 0.906 12 N -0.360 5.360 13 C 0.325 3.675 14 O -0.434 6.434 15 C -0.264 4.264 16 S 0.056 5.944 17 C -0.677 4.677 18 H 0.079 0.921 19 C -0.162 4.162 20 N -0.556 5.556 21 Si 0.738 3.262 22 H -0.188 1.188 23 H -0.185 1.185 24 H -0.158 1.158 25 C -0.118 4.118 26 H 0.101 0.899 27 C -0.202 4.202 28 C -0.005 4.005 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.155 0.845 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.250 0.750 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.098 0.902 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.587 -16.051 21.963 30.867 hybrid contribution 1.333 -0.694 -1.428 2.073 sum -13.254 -16.745 20.535 29.627 Atomic orbital electron populations 1.21040 0.89549 1.04070 1.03729 1.23712 0.98068 0.96691 0.90654 1.21457 0.91122 0.98471 1.09885 1.21226 1.00338 0.92724 1.03300 1.19031 0.89081 0.81189 0.76542 1.90748 1.71185 1.35459 1.49958 1.48069 1.07488 1.20534 1.57383 1.22853 0.99824 0.89372 0.91867 1.22309 0.95158 1.02646 0.98066 1.21026 0.92606 0.97897 0.83723 0.90644 1.45812 1.60889 1.08937 1.20373 1.19853 0.78290 0.82985 0.86332 1.90685 1.46423 1.44854 1.61482 1.23284 1.05479 0.99824 0.97832 1.84649 1.78463 1.09006 1.22304 1.22474 1.43401 0.98624 1.03224 0.92113 1.25599 0.94156 1.01957 0.94478 1.70024 1.43066 1.29205 1.13272 0.85846 0.81132 0.79621 0.79635 1.18761 1.18454 1.15819 1.21648 0.96439 0.97035 0.96658 0.89936 1.21763 0.93239 1.02463 1.02783 1.21665 0.79126 1.03347 0.96359 0.89351 0.90666 0.89416 0.87681 0.88595 0.89490 0.90895 0.90180 0.84500 0.90879 0.90844 0.74998 0.87133 0.87036 0.91406 0.92503 0.91094 0.91821 0.90226 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.79 9.00 71.24 0.64 -0.15 16 2 C -0.07 -0.94 9.81 24.52 0.24 -0.70 16 3 C -0.21 -3.02 5.65 -18.70 -0.11 -3.13 16 4 C -0.12 -0.97 7.36 71.24 0.52 -0.44 16 5 C 0.55 11.59 7.46 86.57 0.65 12.24 16 6 O -0.59 -17.06 15.90 -4.08 -0.06 -17.12 16 7 N -0.60 -10.51 2.97 -823.18 -2.45 -12.95 16 8 C 0.08 1.14 4.70 86.36 0.41 1.54 16 9 C -0.14 -2.46 5.65 30.67 0.17 -2.28 16 10 C 0.15 2.92 1.88 45.02 0.08 3.01 16 11 H 0.08 1.75 7.58 -2.39 -0.02 1.74 16 12 N -0.71 -15.35 4.36 -442.41 -1.93 -17.28 16 13 C 0.54 17.19 7.81 87.66 0.68 17.88 16 14 O -0.56 -21.95 15.52 -3.04 -0.05 -22.00 16 15 C -0.11 -4.08 6.16 71.24 0.44 -3.65 16 16 S -0.17 -8.39 18.55 -56.49 -1.05 -9.44 16 17 C -0.53 -30.45 10.04 67.95 0.68 -29.77 16 18 H 0.06 3.70 8.03 -2.91 -0.02 3.67 16 19 C 0.04 2.52 5.50 84.86 0.47 2.99 16 20 N -0.92 -55.55 13.97 21.65 0.30 -55.25 16 21 Si 0.92 44.40 27.74 68.60 1.90 46.30 16 22 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.23 -11.25 6.74 99.48 0.67 -10.58 16 25 C -0.10 -1.53 2.46 -10.72 -0.03 -1.56 16 26 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 27 C -0.14 -2.13 9.03 71.98 0.65 -1.48 16 28 C 0.12 2.01 5.73 86.36 0.49 2.50 16 29 H 0.09 0.37 8.10 -2.39 -0.02 0.35 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.09 0.38 7.42 -2.39 -0.02 0.36 16 32 H 0.11 1.73 7.70 -2.91 -0.02 1.71 16 33 H 0.10 0.50 6.80 -2.39 -0.02 0.48 16 34 H 0.09 0.45 6.79 -2.38 -0.02 0.44 16 35 H 0.07 0.62 6.21 -2.39 -0.01 0.61 16 36 H 0.08 1.04 8.01 -2.39 -0.02 1.02 16 37 H 0.14 1.38 3.14 -3.12 -0.01 1.37 16 38 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.41 6.82 8.31 -92.71 -0.77 6.05 16 41 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 42 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 43 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 0.95 7.36 -2.39 -0.02 0.94 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.09 1.71 7.00 -2.39 -0.02 1.69 16 Total: -1.00 -77.25 392.23 2.83 -74.43 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.16 Total: 16.31 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 6.00 Total: -3.00 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -4.07 Total: -85.48 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.11 Total: -39.12 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.30 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.05 Total: -9.44 kcal Total: -77.25 2.83 -74.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745008.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.419 kcal (2) G-P(sol) polarization free energy of solvation -77.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds