Wall clock time and date at job start Sat Apr 11 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32992 * 120.00100 * 2 1 4 4 C 1.50701 * 120.00100 * 179.97438 * 3 2 1 5 5 C 1.47102 * 120.00010 * 359.97438 * 3 2 1 6 6 O 1.21612 * 120.00778 * 262.86910 * 5 3 2 7 7 N 1.34781 * 119.99865 * 82.86640 * 5 3 2 8 8 C 1.46928 * 120.62731 * 5.27806 * 7 5 3 9 9 C 1.53624 * 108.54446 * 126.37105 * 8 7 5 10 10 C 1.53033 * 109.24371 * 54.85233 * 9 8 7 11 11 H 1.09005 * 109.45696 * 178.49461 * 10 9 8 12 12 N 1.46495 * 109.44886 * 58.52869 * 10 9 8 13 13 C 1.34780 * 120.00491 * 84.93947 * 12 10 9 14 14 O 1.21282 * 119.99018 * 359.97438 * 13 12 10 15 15 C 1.50695 * 120.00309 * 179.97438 * 13 12 10 16 16 S 1.81004 * 109.47150 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99819 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00082 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99462 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00334 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99798 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47211 * 90.00100 * 21 19 17 23 23 H 1.48493 * 109.47021 * 210.00342 * 21 19 17 24 24 H 1.48504 * 109.46697 * 330.00395 * 21 19 17 25 25 C 1.53038 * 109.53650 * 298.51167 * 10 9 8 26 26 H 1.08999 * 109.53008 * 301.39460 * 25 10 9 27 27 C 1.53006 * 109.49538 * 181.31864 * 25 10 9 28 28 C 1.46922 * 120.63527 * 185.55249 * 7 5 3 29 29 H 1.08996 * 109.47336 * 300.00851 * 1 2 3 30 30 H 1.09006 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47053 * 60.00995 * 1 2 3 32 32 H 1.08001 * 120.00339 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47269 * 84.97406 * 4 3 2 34 34 H 1.09003 * 109.47136 * 204.97111 * 4 3 2 35 35 H 1.09004 * 109.47037 * 324.96912 * 4 3 2 36 36 H 1.09008 * 109.58425 * 246.19907 * 8 7 5 37 37 H 1.08997 * 109.59093 * 6.62082 * 8 7 5 38 38 H 1.09006 * 109.62816 * 294.85645 * 9 8 7 39 39 H 1.08997 * 109.42969 * 174.72508 * 9 8 7 40 40 H 0.97003 * 120.00006 * 264.93451 * 12 10 9 41 41 H 1.08996 * 109.47371 * 300.00411 * 15 13 12 42 42 H 1.09003 * 109.46722 * 60.00145 * 15 13 12 43 43 H 0.96998 * 120.00081 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.46851 * 300.15915 * 27 25 10 45 45 H 1.08993 * 109.47435 * 60.16618 * 27 25 10 46 46 H 1.08999 * 109.46851 * 180.16554 * 27 25 10 47 47 H 1.09007 * 109.58324 * 353.38120 * 28 7 5 48 48 H 1.09002 * 109.58669 * 113.79829 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 1.2460 3.0175 -1.0457 7 7 0.9736 2.9371 1.1574 8 6 1.2936 2.2956 2.4399 9 6 1.9065 3.3500 3.3741 10 6 0.9506 4.5396 3.4880 11 1 1.3699 5.2782 4.1712 12 7 -0.3422 4.0791 4.0005 13 6 -0.5367 3.9595 5.3288 14 8 0.3589 4.2326 6.0997 15 6 -1.8668 3.4863 5.8560 16 16 -1.8137 3.4306 7.6645 17 6 -3.4469 2.8615 8.0010 18 1 -4.1280 2.6627 7.1868 19 6 -3.8577 2.6677 9.3126 20 7 -3.0275 2.9096 10.3049 21 14 -5.5890 2.0637 9.6696 22 1 -5.5970 0.5793 9.7097 23 1 -6.0388 2.5968 10.9805 24 1 -6.5075 2.5349 8.6020 25 6 0.7558 5.1735 2.1087 26 1 1.7205 5.4943 1.7156 27 6 -0.1741 6.3826 2.2292 28 6 0.1344 4.1431 1.1607 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 -0.8901 32 1 2.0471 -0.9353 0.0004 33 1 4.0427 1.0615 -1.0229 34 1 4.0422 2.0835 0.4344 35 1 4.0421 0.3103 0.5908 36 1 0.3831 1.8942 2.8849 37 1 2.0091 1.4896 2.2769 38 1 2.8608 3.6874 2.9693 39 1 2.0632 2.9134 4.3604 40 1 -1.0584 3.8604 3.3839 41 1 -2.6498 4.1738 5.5362 42 1 -2.0776 2.4897 5.4682 43 1 -3.3144 2.7738 11.2215 44 1 -1.1383 6.0615 2.6233 45 1 0.2684 7.1155 2.9037 46 1 -0.3148 6.8320 1.2461 47 1 0.0848 4.5564 0.1533 48 1 -0.8687 3.8893 1.5035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073745009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:09 Heat of formation + Delta-G solvation = -68.233562 kcal Electronic energy + Delta-G solvation = -28018.886963 eV Core-core repulsion = 24199.885651 eV Total energy + Delta-G solvation = -3819.001311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.97814 -39.48155 -37.66217 -35.74151 -34.43112 -32.94568 -32.45642 -31.51011 -30.58522 -28.93468 -27.26640 -25.92078 -25.46590 -24.79457 -22.71928 -22.29650 -20.93546 -19.51741 -18.45757 -17.90009 -16.92768 -16.45539 -16.25349 -15.97345 -15.64697 -15.16990 -14.83055 -14.64543 -14.44268 -14.22443 -14.18526 -13.94722 -13.72185 -13.43473 -13.28163 -13.14039 -12.97489 -12.80408 -12.60276 -12.36023 -12.23085 -12.11795 -11.92729 -11.92112 -11.76093 -11.28588 -11.17333 -11.08878 -11.04781 -10.82442 -10.71010 -10.08846 -9.84081 -9.43138 -9.26578 -9.10214 -9.03946 -8.82890 -8.26984 -6.53055 -6.24560 -3.95150 1.42258 2.30299 2.73058 3.00028 3.04922 3.20102 3.25971 3.29879 3.67928 4.11800 4.17788 4.35619 4.49524 4.53428 4.56002 4.79880 4.82732 4.89615 4.99729 5.05595 5.10728 5.11543 5.18786 5.21458 5.29505 5.31996 5.34189 5.44156 5.47994 5.53038 5.55243 5.62557 5.63757 5.72129 5.77074 5.83645 5.88679 5.91696 5.99981 6.03705 6.09843 6.19783 6.25641 6.60714 7.06244 7.56768 7.65307 7.84981 8.32321 8.57229 9.20997 10.82811 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.002578 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.669272 B =10859.725274 C =11599.277753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C -0.170 4.170 4 C -0.104 4.104 5 C 0.563 3.437 6 O -0.541 6.541 7 N -0.606 5.606 8 C 0.110 3.890 9 C -0.146 4.146 10 C 0.152 3.848 11 H 0.093 0.907 12 N -0.732 5.732 13 C 0.534 3.466 14 O -0.516 6.516 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.111 4.111 26 H 0.087 0.913 27 C -0.145 4.145 28 C 0.113 3.887 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.395 0.605 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.268 0.732 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.887 -2.090 -21.757 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C -0.173 4.173 4 C -0.161 4.161 5 C 0.352 3.648 6 O -0.419 6.419 7 N -0.338 5.338 8 C -0.012 4.012 9 C -0.185 4.185 10 C 0.047 3.953 11 H 0.111 0.889 12 N -0.388 5.388 13 C 0.320 3.680 14 O -0.390 6.390 15 C -0.305 4.305 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.130 4.130 26 H 0.106 0.894 27 C -0.203 4.203 28 C -0.009 4.009 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.143 0.857 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.114 0.886 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.308 -1.302 -20.816 23.725 hybrid contribution -2.489 -0.892 -0.830 2.771 sum 8.819 -2.194 -21.646 23.476 Atomic orbital electron populations 1.20986 0.92623 1.03132 1.02645 1.23328 0.96439 0.96799 0.96624 1.21417 0.97022 0.92878 1.06021 1.20669 0.89688 1.02942 1.02790 1.18557 0.78102 0.84929 0.83222 1.90796 1.58490 1.61117 1.31453 1.48153 1.51250 1.27968 1.06460 1.21830 1.01117 0.95570 0.82726 1.22391 0.98778 0.96696 1.00665 1.20850 0.84303 0.95775 0.94381 0.88875 1.46140 1.15049 1.70370 1.07205 1.20293 0.89580 0.76654 0.81484 1.90702 1.44214 1.47881 1.56166 1.23535 0.96462 1.03692 1.06790 1.85390 1.19060 1.87457 0.91321 1.22860 0.98626 1.51853 0.95061 0.90975 1.24987 0.98427 0.95021 0.95118 1.70009 1.35252 1.45596 0.99415 0.86178 0.82552 0.78942 0.77898 1.20268 1.20742 1.19698 1.21768 1.01018 0.95598 0.94665 0.89436 1.21760 0.99677 0.96847 1.02049 1.21685 0.93063 0.84624 1.01553 0.91049 0.91220 0.91183 0.85659 0.90836 0.91710 0.90832 0.90848 0.89451 0.90706 0.89414 0.77032 0.89335 0.89386 0.92167 0.92005 0.91823 0.92252 0.88557 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.16 36.01 0.33 -0.71 16 2 C -0.11 -0.84 9.92 -36.13 -0.36 -1.20 16 3 C -0.17 -1.48 3.73 -102.85 -0.38 -1.87 16 4 C -0.10 -0.70 10.02 36.01 0.36 -0.34 16 5 C 0.56 6.19 5.90 -12.66 -0.07 6.11 16 6 O -0.54 -7.89 16.52 5.27 0.09 -7.80 16 7 N -0.61 -5.61 2.97 -173.89 -0.52 -6.13 16 8 C 0.11 0.95 6.02 -3.48 -0.02 0.93 16 9 C -0.15 -1.40 5.79 -26.39 -0.15 -1.55 16 10 C 0.15 1.59 2.21 -67.90 -0.15 1.44 16 11 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 12 N -0.73 -8.60 3.59 -53.77 -0.19 -8.79 16 13 C 0.53 9.08 7.81 -10.99 -0.09 8.99 16 14 O -0.52 -10.82 15.53 5.56 0.09 -10.73 16 15 C -0.15 -2.94 6.16 36.00 0.22 -2.71 16 16 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 17 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -25.78 13.22 55.49 0.73 -25.04 16 21 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 C -0.11 -0.94 2.67 -90.50 -0.24 -1.18 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 C -0.15 -1.18 9.06 37.16 0.34 -0.85 16 28 C 0.11 0.99 5.43 -3.72 -0.02 0.97 16 29 H 0.07 0.57 8.02 -51.93 -0.42 0.15 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 36 H 0.07 0.66 7.74 -51.92 -0.40 0.26 16 37 H 0.09 0.68 6.35 -51.93 -0.33 0.35 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.39 3.81 6.73 -40.82 -0.27 3.54 16 41 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 42 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.06 0.52 7.53 -51.93 -0.39 0.13 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.95 7.00 -51.92 -0.36 0.59 16 48 H 0.07 0.53 6.64 -51.93 -0.34 0.19 16 LS Contribution 401.43 15.07 6.05 6.05 Total: -1.00 -34.71 401.43 -8.98 -43.69 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.95 Total: 1.10 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.04 Total: -4.65 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.02 Total: -39.97 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.17 Total: -18.53 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.71 -8.98 -43.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.543 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds