Wall clock time and date at job start Sat Apr 11 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32992 * 120.00100 * 2 1 4 4 C 1.50701 * 120.00100 * 179.97438 * 3 2 1 5 5 C 1.47102 * 120.00010 * 359.97438 * 3 2 1 6 6 O 1.21612 * 120.00778 * 262.86910 * 5 3 2 7 7 N 1.34781 * 119.99865 * 82.86640 * 5 3 2 8 8 C 1.46928 * 120.62731 * 5.27806 * 7 5 3 9 9 C 1.53624 * 108.54446 * 126.37105 * 8 7 5 10 10 C 1.53033 * 109.24371 * 54.85233 * 9 8 7 11 11 H 1.09005 * 109.45696 * 178.49461 * 10 9 8 12 12 N 1.46495 * 109.44886 * 58.52869 * 10 9 8 13 13 C 1.34780 * 120.00491 * 84.93947 * 12 10 9 14 14 O 1.21282 * 119.99018 * 359.97438 * 13 12 10 15 15 C 1.50695 * 120.00309 * 179.97438 * 13 12 10 16 16 S 1.81004 * 109.47150 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99819 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00082 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99462 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00334 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99798 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47211 * 90.00100 * 21 19 17 23 23 H 1.48493 * 109.47021 * 210.00342 * 21 19 17 24 24 H 1.48504 * 109.46697 * 330.00395 * 21 19 17 25 25 C 1.53038 * 109.53650 * 298.51167 * 10 9 8 26 26 H 1.08999 * 109.53008 * 301.39460 * 25 10 9 27 27 C 1.53006 * 109.49538 * 181.31864 * 25 10 9 28 28 C 1.46922 * 120.63527 * 185.55249 * 7 5 3 29 29 H 1.08996 * 109.47336 * 300.00851 * 1 2 3 30 30 H 1.09006 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47053 * 60.00995 * 1 2 3 32 32 H 1.08001 * 120.00339 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47269 * 84.97406 * 4 3 2 34 34 H 1.09003 * 109.47136 * 204.97111 * 4 3 2 35 35 H 1.09004 * 109.47037 * 324.96912 * 4 3 2 36 36 H 1.09008 * 109.58425 * 246.19907 * 8 7 5 37 37 H 1.08997 * 109.59093 * 6.62082 * 8 7 5 38 38 H 1.09006 * 109.62816 * 294.85645 * 9 8 7 39 39 H 1.08997 * 109.42969 * 174.72508 * 9 8 7 40 40 H 0.97003 * 120.00006 * 264.93451 * 12 10 9 41 41 H 1.08996 * 109.47371 * 300.00411 * 15 13 12 42 42 H 1.09003 * 109.46722 * 60.00145 * 15 13 12 43 43 H 0.96998 * 120.00081 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.46851 * 300.15915 * 27 25 10 45 45 H 1.08993 * 109.47435 * 60.16618 * 27 25 10 46 46 H 1.08999 * 109.46851 * 180.16554 * 27 25 10 47 47 H 1.09007 * 109.58324 * 353.38120 * 28 7 5 48 48 H 1.09002 * 109.58669 * 113.79829 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 1.2460 3.0175 -1.0457 7 7 0.9736 2.9371 1.1574 8 6 1.2936 2.2956 2.4399 9 6 1.9065 3.3500 3.3741 10 6 0.9506 4.5396 3.4880 11 1 1.3699 5.2782 4.1712 12 7 -0.3422 4.0791 4.0005 13 6 -0.5367 3.9595 5.3288 14 8 0.3589 4.2326 6.0997 15 6 -1.8668 3.4863 5.8560 16 16 -1.8137 3.4306 7.6645 17 6 -3.4469 2.8615 8.0010 18 1 -4.1280 2.6627 7.1868 19 6 -3.8577 2.6677 9.3126 20 7 -3.0275 2.9096 10.3049 21 14 -5.5890 2.0637 9.6696 22 1 -5.5970 0.5793 9.7097 23 1 -6.0388 2.5968 10.9805 24 1 -6.5075 2.5349 8.6020 25 6 0.7558 5.1735 2.1087 26 1 1.7205 5.4943 1.7156 27 6 -0.1741 6.3826 2.2292 28 6 0.1344 4.1431 1.1607 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 -0.8901 32 1 2.0471 -0.9353 0.0004 33 1 4.0427 1.0615 -1.0229 34 1 4.0422 2.0835 0.4344 35 1 4.0421 0.3103 0.5908 36 1 0.3831 1.8942 2.8849 37 1 2.0091 1.4896 2.2769 38 1 2.8608 3.6874 2.9693 39 1 2.0632 2.9134 4.3604 40 1 -1.0584 3.8604 3.3839 41 1 -2.6498 4.1738 5.5362 42 1 -2.0776 2.4897 5.4682 43 1 -3.3144 2.7738 11.2215 44 1 -1.1383 6.0615 2.6233 45 1 0.2684 7.1155 2.9037 46 1 -0.3148 6.8320 1.2461 47 1 0.0848 4.5564 0.1533 48 1 -0.8687 3.8893 1.5035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073745009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:09 Heat of formation + Delta-G solvation = -90.002646 kcal Electronic energy + Delta-G solvation = -28019.830941 eV Core-core repulsion = 24199.885651 eV Total energy + Delta-G solvation = -3819.945290 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86160 -40.60190 -38.74410 -36.45486 -35.37078 -34.57107 -33.86034 -32.54883 -31.14302 -30.31367 -27.99267 -27.66288 -26.68223 -25.40918 -23.58036 -23.00755 -22.10385 -20.46102 -19.86966 -19.19812 -18.00034 -17.62221 -17.21392 -16.86585 -16.80726 -16.54521 -16.31849 -15.84750 -15.45877 -15.16911 -15.11707 -14.89231 -14.70275 -14.50329 -14.34586 -14.20522 -13.77491 -13.73673 -13.54128 -13.38374 -13.15221 -13.07584 -12.89308 -12.84863 -12.69547 -12.64952 -12.56404 -12.45401 -12.05564 -12.01683 -11.74466 -11.55170 -11.13095 -10.91305 -10.88608 -10.24749 -10.13223 -9.86481 -9.71047 -8.63656 -8.33509 -6.10420 0.81483 1.28740 1.42782 1.47860 1.48930 1.58508 1.66494 1.97699 2.26668 2.32273 3.00824 3.33623 3.39475 3.59610 3.73083 3.80657 3.92713 3.98734 3.99429 4.18057 4.24559 4.32392 4.34625 4.40505 4.53625 4.54316 4.57997 4.64514 4.68075 4.74119 4.78042 4.79222 4.82418 4.90174 4.99156 5.02604 5.07712 5.09712 5.13667 5.28899 5.42942 5.43404 5.50408 5.52728 5.63645 6.21099 6.27104 6.50934 7.03510 7.08355 7.27917 8.75466 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.002578 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.669272 B =10859.725274 C =11599.277753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.190 4.190 4 C -0.101 4.101 5 C 0.561 3.439 6 O -0.583 6.583 7 N -0.600 5.600 8 C 0.115 3.885 9 C -0.141 4.141 10 C 0.152 3.848 11 H 0.075 0.925 12 N -0.705 5.705 13 C 0.540 3.460 14 O -0.560 6.560 15 C -0.131 4.131 16 S -0.147 6.147 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.996 3.004 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.259 1.259 25 C -0.097 4.097 26 H 0.092 0.908 27 C -0.144 4.144 28 C 0.112 3.888 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.151 0.849 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.409 0.591 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.994 -3.319 -23.396 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 C -0.193 4.193 4 C -0.158 4.158 5 C 0.351 3.649 6 O -0.464 6.464 7 N -0.331 5.331 8 C -0.007 4.007 9 C -0.180 4.180 10 C 0.048 3.952 11 H 0.093 0.907 12 N -0.360 5.360 13 C 0.326 3.674 14 O -0.437 6.437 15 C -0.282 4.282 16 S 0.080 5.920 17 C -0.693 4.693 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.818 3.182 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.183 1.183 25 C -0.116 4.116 26 H 0.110 0.890 27 C -0.202 4.202 28 C -0.011 4.011 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.168 0.832 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.247 0.753 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.106 0.894 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.408 -2.533 -22.495 24.915 hybrid contribution -2.166 -0.481 -0.436 2.261 sum 8.242 -3.014 -22.930 24.552 Atomic orbital electron populations 1.21009 0.92968 1.03900 1.01685 1.23588 0.96352 0.97376 0.94832 1.21520 0.97942 0.92075 1.07717 1.20694 0.88352 1.03595 1.03167 1.18979 0.77648 0.85433 0.82795 1.90772 1.60223 1.62534 1.32891 1.48176 1.50687 1.27858 1.06377 1.21829 1.01439 0.95455 0.81974 1.22317 0.99226 0.96390 1.00060 1.20953 0.83427 0.95944 0.94922 0.90728 1.45849 1.16127 1.68522 1.05479 1.19939 0.88264 0.76470 0.82747 1.90698 1.45223 1.50172 1.57651 1.23380 0.98372 1.05548 1.00941 1.85551 1.19827 1.87811 0.98765 1.23198 0.98818 1.51592 0.95709 0.90030 1.26086 1.03126 0.95001 0.94863 1.70172 1.37674 1.46988 0.99909 0.84994 0.76761 0.78565 0.77926 1.19302 1.20444 1.18280 1.21654 1.01470 0.95522 0.93001 0.88990 1.21754 0.99273 0.96482 1.02694 1.21733 0.93646 0.84539 1.01148 0.91416 0.89626 0.92712 0.83171 0.90866 0.92205 0.88771 0.90814 0.88052 0.89418 0.91214 0.75306 0.87574 0.87333 0.92039 0.92139 0.92410 0.90961 0.89373 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.16 71.24 0.65 -1.20 16 2 C -0.10 -1.29 9.92 24.52 0.24 -1.04 16 3 C -0.19 -2.96 3.73 -18.70 -0.07 -3.03 16 4 C -0.10 -1.17 10.02 71.24 0.71 -0.46 16 5 C 0.56 11.70 5.90 86.57 0.51 12.21 16 6 O -0.58 -16.83 16.52 -4.07 -0.07 -16.90 16 7 N -0.60 -10.17 2.97 -822.33 -2.44 -12.61 16 8 C 0.12 1.77 6.02 86.51 0.52 2.29 16 9 C -0.14 -2.53 5.79 30.82 0.18 -2.35 16 10 C 0.15 3.01 2.21 45.02 0.10 3.11 16 11 H 0.07 1.84 7.58 -2.38 -0.02 1.82 16 12 N -0.71 -15.49 3.59 -442.43 -1.59 -17.08 16 13 C 0.54 18.01 7.81 87.65 0.68 18.70 16 14 O -0.56 -23.87 15.53 -3.04 -0.05 -23.91 16 15 C -0.13 -4.86 6.16 71.23 0.44 -4.42 16 16 S -0.15 -7.86 20.57 -56.49 -1.16 -9.02 16 17 C -0.55 -30.37 9.50 67.96 0.65 -29.73 16 18 H 0.08 4.22 7.80 -2.91 -0.02 4.19 16 19 C 0.01 0.79 5.49 84.86 0.47 1.25 16 20 N -0.91 -55.10 13.22 21.65 0.29 -54.81 16 21 Si 1.00 42.82 29.55 68.60 2.03 44.85 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 C -0.10 -1.49 2.67 -10.72 -0.03 -1.52 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 27 C -0.14 -2.11 9.06 71.98 0.65 -1.46 16 28 C 0.11 1.77 5.43 86.36 0.47 2.24 16 29 H 0.07 0.95 8.02 -2.39 -0.02 0.93 16 30 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.05 0.91 8.09 -2.39 -0.02 0.89 16 32 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.74 8.08 -2.39 -0.02 0.72 16 35 H 0.09 0.68 8.11 -2.38 -0.02 0.66 16 36 H 0.07 1.16 7.74 -2.38 -0.02 1.14 16 37 H 0.10 1.33 6.35 -2.39 -0.02 1.31 16 38 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.41 6.86 6.73 -92.71 -0.62 6.23 16 41 H 0.11 3.57 8.14 -2.40 -0.02 3.56 16 42 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 43 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.06 0.90 7.53 -2.39 -0.02 0.89 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.09 1.64 7.00 -2.38 -0.02 1.62 16 48 H 0.08 1.07 6.64 -2.39 -0.02 1.06 16 Total: -1.00 -77.64 401.43 3.51 -74.12 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.33 Total: 20.75 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 6.18 Total: -5.40 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -3.74 Total: -84.50 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -0.11 Total: -40.81 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.02 kcal Total: -77.64 3.51 -74.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.878 kcal (2) G-P(sol) polarization free energy of solvation -77.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds