Wall clock time and date at job start Sat Apr 11 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32988 * 120.00064 * 2 1 4 4 C 1.50701 * 120.00064 * 179.97438 * 3 2 1 5 5 C 1.47100 * 120.00228 * 0.02562 * 3 2 1 6 6 O 1.21613 * 120.00430 * 97.48497 * 5 3 2 7 7 N 1.34777 * 119.99656 * 277.48306 * 5 3 2 8 8 C 1.46930 * 120.63158 * 4.94305 * 7 5 3 9 9 C 1.53189 * 108.77236 * 233.58501 * 8 7 5 10 10 C 1.53042 * 109.31561 * 305.36149 * 9 8 7 11 11 H 1.09005 * 109.45809 * 301.35206 * 10 9 8 12 12 N 1.46500 * 109.46546 * 181.37296 * 10 9 8 13 13 C 1.34771 * 119.99697 * 85.00045 * 12 10 9 14 14 O 1.21281 * 120.00324 * 0.02562 * 13 12 10 15 15 C 1.50704 * 119.99738 * 180.02562 * 13 12 10 16 16 S 1.81004 * 109.46989 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99702 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00553 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99832 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00193 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00291 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46607 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47254 * 119.99478 * 21 19 17 24 24 H 1.48496 * 109.47021 * 239.99949 * 21 19 17 25 25 C 1.53046 * 109.53752 * 61.36578 * 10 9 8 26 26 H 1.08996 * 109.49444 * 58.58519 * 25 10 9 27 27 C 1.53002 * 109.49963 * 178.65691 * 25 10 9 28 28 C 1.46929 * 120.63183 * 184.65660 * 7 5 3 29 29 H 1.09004 * 109.47216 * 299.99709 * 1 2 3 30 30 H 1.08992 * 109.47541 * 59.99736 * 1 2 3 31 31 H 1.09006 * 109.47514 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.99712 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47356 * 271.07543 * 4 3 2 34 34 H 1.09000 * 109.47255 * 151.07107 * 4 3 2 35 35 H 1.09003 * 109.46964 * 31.07263 * 4 3 2 36 36 H 1.08998 * 109.58782 * 353.36542 * 8 7 5 37 37 H 1.08998 * 109.58652 * 113.65534 * 8 7 5 38 38 H 1.08997 * 109.50366 * 65.31383 * 9 8 7 39 39 H 1.08997 * 109.50027 * 185.41479 * 9 8 7 40 40 H 0.97001 * 119.99966 * 265.00252 * 12 10 9 41 41 H 1.09005 * 109.46800 * 299.99388 * 15 13 12 42 42 H 1.08996 * 109.47115 * 59.99880 * 15 13 12 43 43 H 0.96999 * 120.00304 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.47095 * 59.99352 * 27 25 10 45 45 H 1.08992 * 109.46913 * 180.02562 * 27 25 10 46 46 H 1.09003 * 109.46683 * 299.99706 * 27 25 10 47 47 H 1.08993 * 109.58683 * 246.20702 * 28 7 5 48 48 H 1.09000 * 109.58069 * 6.62978 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4365 2.4257 0.0006 6 8 1.2517 3.0207 1.0450 7 7 0.9675 2.9335 -1.1564 8 6 1.0876 2.1760 -2.4097 9 6 1.7744 3.0594 -3.4559 10 6 1.0066 4.3766 -3.5888 11 1 -0.0238 4.1688 -3.8776 12 7 1.6416 5.2107 -4.6121 13 6 1.3229 5.0433 -5.9109 14 8 0.5101 4.2026 -6.2324 15 6 1.9765 5.9010 -6.9637 16 16 1.3444 5.4395 -8.5957 17 6 2.2495 6.5658 -9.6041 18 1 2.9430 7.2589 -9.1511 19 6 2.0705 6.5631 -10.9805 20 7 1.2249 5.7188 -11.5326 21 14 3.0306 7.7567 -12.0496 22 1 3.9085 8.5931 -11.1923 23 1 3.8618 6.9963 -13.0171 24 1 2.0843 8.6300 -12.7892 25 6 1.0212 5.1151 -2.2484 26 1 2.0519 5.3013 -1.9469 27 6 0.2821 6.4472 -2.3910 28 6 0.3209 4.2524 -1.1875 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 2.0470 -0.9354 -0.0004 33 1 4.0419 1.1326 1.0282 34 1 4.0425 2.0510 -0.4966 35 1 4.0425 0.2713 -0.5295 36 1 1.6847 1.2801 -2.2393 37 1 0.0958 1.8926 -2.7618 38 1 2.7980 3.2651 -3.1431 39 1 1.7835 2.5452 -4.4169 40 1 2.2914 5.8834 -4.3549 41 1 1.7502 6.9496 -6.7700 42 1 3.0558 5.7510 -6.9359 43 1 1.1001 5.7166 -12.4945 44 1 -0.7488 6.2603 -2.6915 45 1 0.2933 6.9728 -1.4363 46 1 0.7760 7.0574 -3.1472 47 1 -0.7323 4.1371 -1.4433 48 1 0.4118 4.7270 -0.2104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073745011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:15 Heat of formation + Delta-G solvation = -70.802222 kcal Electronic energy + Delta-G solvation = -27525.061338 eV Core-core repulsion = 23705.948641 eV Total energy + Delta-G solvation = -3819.112697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86848 -39.47610 -37.69192 -35.80497 -34.69508 -32.94419 -32.45228 -31.47095 -30.61669 -29.00324 -27.33346 -25.72089 -25.40238 -24.67105 -22.75443 -22.26081 -20.53616 -20.20343 -18.56603 -17.83516 -17.02332 -16.42022 -16.10288 -16.05418 -15.85572 -15.08649 -14.82846 -14.69248 -14.43336 -14.25922 -14.20214 -13.97324 -13.65147 -13.29009 -13.25344 -13.08586 -13.03044 -12.77731 -12.62557 -12.39624 -12.30070 -12.14384 -12.02480 -11.93056 -11.76871 -11.34590 -11.18474 -11.08921 -11.04335 -10.80466 -10.67731 -10.12313 -9.82855 -9.47689 -9.29652 -9.10223 -8.99855 -8.89509 -8.26258 -6.52680 -6.24415 -3.94888 1.38714 2.26938 2.70794 2.99755 3.04842 3.19627 3.26306 3.30696 3.66805 4.09784 4.17940 4.32349 4.47518 4.51535 4.56887 4.78541 4.81405 4.91627 5.02512 5.04705 5.05946 5.11002 5.17601 5.21612 5.28189 5.29140 5.34518 5.41481 5.45223 5.48423 5.51841 5.60467 5.61249 5.63988 5.74828 5.82753 5.85641 5.95711 6.00242 6.07490 6.11188 6.17636 6.22209 6.59952 7.03453 7.57493 7.67153 7.82258 8.32922 8.57434 9.21275 10.83025 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.002119 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.455836 B =13208.515774 C =13607.866898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C -0.168 4.168 4 C -0.104 4.104 5 C 0.563 3.437 6 O -0.540 6.540 7 N -0.607 5.607 8 C 0.110 3.890 9 C -0.146 4.146 10 C 0.153 3.847 11 H 0.090 0.910 12 N -0.733 5.733 13 C 0.534 3.466 14 O -0.517 6.517 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.111 4.111 26 H 0.079 0.921 27 C -0.146 4.146 28 C 0.119 3.881 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 -7.626 24.138 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.136 4.136 3 C -0.171 4.171 4 C -0.161 4.161 5 C 0.351 3.649 6 O -0.418 6.418 7 N -0.340 5.340 8 C -0.013 4.013 9 C -0.185 4.185 10 C 0.047 3.953 11 H 0.108 0.892 12 N -0.386 5.386 13 C 0.320 3.680 14 O -0.391 6.391 15 C -0.305 4.305 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.131 4.131 26 H 0.097 0.903 27 C -0.204 4.204 28 C -0.003 4.003 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.231 0.769 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.319 -8.771 23.976 25.532 hybrid contribution 1.949 2.022 -0.352 2.830 sum 2.268 -6.749 23.624 24.674 Atomic orbital electron populations 1.21012 0.92644 1.03116 1.02723 1.23349 0.96419 0.96853 0.96944 1.21447 0.97073 0.92896 1.05641 1.20662 0.89566 1.03015 1.02812 1.18557 0.77938 0.85180 0.83200 1.90800 1.58481 1.61322 1.31179 1.48182 1.58724 1.19094 1.07977 1.21781 1.01724 0.94804 0.83004 1.22347 0.99833 0.96554 0.99802 1.20875 0.98214 0.89557 0.86630 0.89162 1.46062 1.46340 1.40154 1.06087 1.20305 0.81655 0.83590 0.82455 1.90696 1.33030 1.34443 1.80922 1.23537 1.03662 1.01973 1.01280 1.85382 1.56765 1.50123 0.91086 1.22903 1.28715 1.22739 0.93944 0.90903 1.24996 0.95434 0.96134 0.97053 1.70024 1.33639 1.34989 1.11631 0.86119 0.79422 0.80158 0.79813 1.19627 1.20554 1.20559 1.21853 1.01053 0.95790 0.94400 0.90259 1.21762 1.00853 0.95644 1.02093 1.21753 0.96166 0.82101 1.00317 0.91156 0.91027 0.91209 0.85633 0.90794 0.91645 0.90807 0.89124 0.90698 0.91267 0.89439 0.76876 0.89293 0.89298 0.92228 0.92080 0.92231 0.91712 0.90908 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.16 36.01 0.33 -0.62 16 2 C -0.12 -0.81 9.38 -36.13 -0.34 -1.15 16 3 C -0.17 -1.41 3.99 -102.85 -0.41 -1.82 16 4 C -0.10 -0.69 10.03 36.01 0.36 -0.33 16 5 C 0.56 6.08 5.92 -12.67 -0.07 6.00 16 6 O -0.54 -7.78 16.54 5.27 0.09 -7.70 16 7 N -0.61 -5.58 2.97 -173.90 -0.52 -6.10 16 8 C 0.11 0.91 5.35 -3.71 -0.02 0.89 16 9 C -0.15 -1.42 5.65 -26.61 -0.15 -1.57 16 10 C 0.15 1.61 1.88 -67.88 -0.13 1.48 16 11 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 12 N -0.73 -8.89 4.36 -53.76 -0.23 -9.12 16 13 C 0.53 9.27 7.81 -10.99 -0.09 9.18 16 14 O -0.52 -10.95 15.52 5.56 0.09 -10.86 16 15 C -0.15 -2.98 6.16 36.01 0.22 -2.75 16 16 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 17 C -0.53 -15.00 9.50 30.94 0.29 -14.71 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 21 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.11 -0.94 2.47 -90.27 -0.22 -1.16 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 C -0.15 -1.18 9.03 37.16 0.34 -0.85 16 28 C 0.12 1.06 5.73 -3.48 -0.02 1.04 16 29 H 0.07 0.58 8.09 -51.93 -0.42 0.15 16 30 H 0.07 0.50 7.07 -51.93 -0.37 0.14 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 35 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 36 H 0.09 0.65 5.95 -51.93 -0.31 0.34 16 37 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.40 3.85 8.31 -40.82 -0.34 3.51 16 41 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 42 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.55 7.36 -51.93 -0.38 0.17 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.10 0.95 7.03 -51.93 -0.37 0.58 16 LS Contribution 402.85 15.07 6.07 6.07 Total: -1.00 -35.12 402.85 -9.04 -44.17 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -8.03 Total: 0.72 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 0.00 Total: -4.40 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.02 Total: -40.34 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.17 Total: -18.56 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.12 -9.04 -44.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.637 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds