Wall clock time and date at job start Sat Apr 11 2020 06:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32988 * 120.00064 * 2 1 4 4 C 1.50701 * 120.00064 * 179.97438 * 3 2 1 5 5 C 1.47100 * 120.00228 * 0.02562 * 3 2 1 6 6 O 1.21613 * 120.00430 * 97.48497 * 5 3 2 7 7 N 1.34777 * 119.99656 * 277.48306 * 5 3 2 8 8 C 1.46930 * 120.63158 * 4.94305 * 7 5 3 9 9 C 1.53189 * 108.77236 * 233.58501 * 8 7 5 10 10 C 1.53042 * 109.31561 * 305.36149 * 9 8 7 11 11 H 1.09005 * 109.45809 * 301.35206 * 10 9 8 12 12 N 1.46500 * 109.46546 * 181.37296 * 10 9 8 13 13 C 1.34771 * 119.99697 * 85.00045 * 12 10 9 14 14 O 1.21281 * 120.00324 * 0.02562 * 13 12 10 15 15 C 1.50704 * 119.99738 * 180.02562 * 13 12 10 16 16 S 1.81004 * 109.46989 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99702 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00553 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99832 * 180.02562 * 17 16 15 20 20 N 1.31633 * 120.00193 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00291 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46607 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47254 * 119.99478 * 21 19 17 24 24 H 1.48496 * 109.47021 * 239.99949 * 21 19 17 25 25 C 1.53046 * 109.53752 * 61.36578 * 10 9 8 26 26 H 1.08996 * 109.49444 * 58.58519 * 25 10 9 27 27 C 1.53002 * 109.49963 * 178.65691 * 25 10 9 28 28 C 1.46929 * 120.63183 * 184.65660 * 7 5 3 29 29 H 1.09004 * 109.47216 * 299.99709 * 1 2 3 30 30 H 1.08992 * 109.47541 * 59.99736 * 1 2 3 31 31 H 1.09006 * 109.47514 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.99712 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47356 * 271.07543 * 4 3 2 34 34 H 1.09000 * 109.47255 * 151.07107 * 4 3 2 35 35 H 1.09003 * 109.46964 * 31.07263 * 4 3 2 36 36 H 1.08998 * 109.58782 * 353.36542 * 8 7 5 37 37 H 1.08998 * 109.58652 * 113.65534 * 8 7 5 38 38 H 1.08997 * 109.50366 * 65.31383 * 9 8 7 39 39 H 1.08997 * 109.50027 * 185.41479 * 9 8 7 40 40 H 0.97001 * 119.99966 * 265.00252 * 12 10 9 41 41 H 1.09005 * 109.46800 * 299.99388 * 15 13 12 42 42 H 1.08996 * 109.47115 * 59.99880 * 15 13 12 43 43 H 0.96999 * 120.00304 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.47095 * 59.99352 * 27 25 10 45 45 H 1.08992 * 109.46913 * 180.02562 * 27 25 10 46 46 H 1.09003 * 109.46683 * 299.99706 * 27 25 10 47 47 H 1.08993 * 109.58683 * 246.20702 * 28 7 5 48 48 H 1.09000 * 109.58069 * 6.62978 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4365 2.4257 0.0006 6 8 1.2517 3.0207 1.0450 7 7 0.9675 2.9335 -1.1564 8 6 1.0876 2.1760 -2.4097 9 6 1.7744 3.0594 -3.4559 10 6 1.0066 4.3766 -3.5888 11 1 -0.0238 4.1688 -3.8776 12 7 1.6416 5.2107 -4.6121 13 6 1.3229 5.0433 -5.9109 14 8 0.5101 4.2026 -6.2324 15 6 1.9765 5.9010 -6.9637 16 16 1.3444 5.4395 -8.5957 17 6 2.2495 6.5658 -9.6041 18 1 2.9430 7.2589 -9.1511 19 6 2.0705 6.5631 -10.9805 20 7 1.2249 5.7188 -11.5326 21 14 3.0306 7.7567 -12.0496 22 1 3.9085 8.5931 -11.1923 23 1 3.8618 6.9963 -13.0171 24 1 2.0843 8.6300 -12.7892 25 6 1.0212 5.1151 -2.2484 26 1 2.0519 5.3013 -1.9469 27 6 0.2821 6.4472 -2.3910 28 6 0.3209 4.2524 -1.1875 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 2.0470 -0.9354 -0.0004 33 1 4.0419 1.1326 1.0282 34 1 4.0425 2.0510 -0.4966 35 1 4.0425 0.2713 -0.5295 36 1 1.6847 1.2801 -2.2393 37 1 0.0958 1.8926 -2.7618 38 1 2.7980 3.2651 -3.1431 39 1 1.7835 2.5452 -4.4169 40 1 2.2914 5.8834 -4.3549 41 1 1.7502 6.9496 -6.7700 42 1 3.0558 5.7510 -6.9359 43 1 1.1001 5.7166 -12.4945 44 1 -0.7488 6.2603 -2.6915 45 1 0.2933 6.9728 -1.4363 46 1 0.7760 7.0574 -3.1472 47 1 -0.7323 4.1371 -1.4433 48 1 0.4118 4.7270 -0.2104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073745011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:14 Heat of formation + Delta-G solvation = -93.480821 kcal Electronic energy + Delta-G solvation = -27526.044756 eV Core-core repulsion = 23705.948641 eV Total energy + Delta-G solvation = -3820.096115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71864 -40.65117 -38.72342 -36.50426 -35.67676 -34.57770 -33.82184 -32.51484 -31.14494 -30.38853 -28.04795 -27.68197 -26.38733 -25.33475 -23.59375 -22.96901 -21.66762 -21.22175 -19.79799 -19.26672 -17.92325 -17.79237 -17.18036 -16.87410 -16.78667 -16.64556 -16.31533 -15.91765 -15.44729 -15.17141 -15.08525 -14.81593 -14.69866 -14.51150 -14.33752 -13.98132 -13.85215 -13.73378 -13.50563 -13.35750 -13.15958 -13.14504 -12.99426 -12.91524 -12.70057 -12.64456 -12.52606 -12.45361 -12.15124 -12.01182 -11.72454 -11.51691 -11.15335 -10.96641 -10.89235 -10.25802 -10.10681 -9.85335 -9.79253 -8.64713 -8.34399 -6.11471 0.80634 1.27949 1.41396 1.45416 1.48927 1.58885 1.64697 1.96676 2.25617 2.30695 2.99909 3.32299 3.39322 3.56643 3.73674 3.81622 3.92768 3.95547 4.04072 4.19149 4.25350 4.32186 4.34417 4.41527 4.53059 4.53667 4.59925 4.62741 4.64837 4.69688 4.74618 4.77957 4.79210 4.87643 4.97070 5.02202 5.04394 5.13374 5.18985 5.29314 5.42050 5.42975 5.48225 5.51732 5.62516 6.20636 6.26140 6.52585 7.01951 7.07479 7.27275 8.74871 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.002119 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.455836 B =13208.515774 C =13607.866898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C -0.189 4.189 4 C -0.100 4.100 5 C 0.561 3.439 6 O -0.584 6.584 7 N -0.602 5.602 8 C 0.115 3.885 9 C -0.139 4.139 10 C 0.152 3.848 11 H 0.071 0.929 12 N -0.707 5.707 13 C 0.538 3.462 14 O -0.560 6.560 15 C -0.131 4.131 16 S -0.148 6.148 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.275 1.275 25 C -0.096 4.096 26 H 0.088 0.912 27 C -0.145 4.145 28 C 0.118 3.882 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.414 0.586 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -7.270 25.093 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.192 4.192 4 C -0.157 4.157 5 C 0.351 3.649 6 O -0.464 6.464 7 N -0.334 5.334 8 C -0.008 4.008 9 C -0.179 4.179 10 C 0.047 3.953 11 H 0.090 0.910 12 N -0.360 5.360 13 C 0.324 3.676 14 O -0.438 6.438 15 C -0.282 4.282 16 S 0.079 5.921 17 C -0.693 4.693 18 H 0.100 0.900 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.116 4.116 26 H 0.106 0.894 27 C -0.203 4.203 28 C -0.005 4.005 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.170 0.830 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.251 0.749 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.096 0.904 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.052 -8.400 24.961 26.417 hybrid contribution 1.368 1.878 -0.517 2.380 sum 3.420 -6.522 24.444 25.529 Atomic orbital electron populations 1.21048 0.92920 1.04057 1.01733 1.23627 0.96374 0.97392 0.94774 1.21530 0.97915 0.92079 1.07688 1.20679 0.88308 1.03743 1.02992 1.19002 0.77464 0.85719 0.82719 1.90773 1.60234 1.62792 1.32631 1.48223 1.58017 1.19122 1.08002 1.21795 1.02078 0.94863 0.82021 1.22253 1.00387 0.95905 0.99327 1.20994 0.97224 0.90170 0.86863 0.91040 1.45792 1.45694 1.40027 1.04495 1.19968 0.81147 0.82837 0.83634 1.90690 1.35070 1.36256 1.81790 1.23383 1.04426 1.03184 0.97213 1.85537 1.58463 1.51426 0.96659 1.23231 1.28713 1.22757 0.94568 0.90033 1.26105 0.96401 0.98010 0.98649 1.70182 1.35452 1.37002 1.12096 0.84929 0.77916 0.77588 0.77665 1.18100 1.19941 1.20012 1.21730 1.01600 0.95606 0.92677 0.89382 1.21763 1.00326 0.95350 1.02821 1.21771 0.96581 0.82139 0.99967 0.92826 0.91330 0.89342 0.83004 0.90966 0.92227 0.88695 0.87565 0.90408 0.90233 0.91318 0.74945 0.87459 0.87393 0.92019 0.92746 0.90891 0.91775 0.90396 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.16 71.24 0.65 -1.08 16 2 C -0.10 -1.20 9.38 24.52 0.23 -0.97 16 3 C -0.19 -2.89 3.99 -18.70 -0.07 -2.96 16 4 C -0.10 -1.15 10.03 71.24 0.71 -0.44 16 5 C 0.56 11.71 5.92 86.57 0.51 12.22 16 6 O -0.58 -16.87 16.54 -4.07 -0.07 -16.94 16 7 N -0.60 -10.48 2.97 -822.34 -2.44 -12.92 16 8 C 0.12 1.75 5.35 86.36 0.46 2.21 16 9 C -0.14 -2.53 5.65 30.67 0.17 -2.36 16 10 C 0.15 3.05 1.88 45.02 0.08 3.13 16 11 H 0.07 1.78 7.58 -2.38 -0.02 1.76 16 12 N -0.71 -16.01 4.36 -442.39 -1.93 -17.94 16 13 C 0.54 18.37 7.81 87.66 0.68 19.05 16 14 O -0.56 -24.14 15.52 -3.03 -0.05 -24.19 16 15 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 16 S -0.15 -8.00 20.57 -56.49 -1.16 -9.17 16 17 C -0.54 -30.59 9.50 67.95 0.65 -29.94 16 18 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 19 C 0.01 0.74 5.49 84.86 0.47 1.20 16 20 N -0.91 -55.27 13.22 21.65 0.29 -54.98 16 21 Si 1.00 43.08 29.55 68.60 2.03 45.10 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 C -0.10 -1.48 2.47 -10.57 -0.03 -1.51 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 C -0.14 -2.12 9.03 71.98 0.65 -1.47 16 28 C 0.12 1.99 5.73 86.51 0.50 2.49 16 29 H 0.05 0.86 8.09 -2.38 -0.02 0.84 16 30 H 0.07 0.88 7.07 -2.39 -0.02 0.87 16 31 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.15 0.97 8.06 -2.91 -0.02 0.94 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.74 8.11 -2.39 -0.02 0.72 16 35 H 0.09 0.67 8.08 -2.39 -0.02 0.65 16 36 H 0.11 1.32 5.95 -2.39 -0.01 1.31 16 37 H 0.08 1.17 8.10 -2.39 -0.02 1.15 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.41 6.90 8.31 -92.71 -0.77 6.13 16 41 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 42 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 43 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 0.95 7.36 -2.39 -0.02 0.94 16 47 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.09 1.71 7.03 -2.39 -0.02 1.69 16 Total: -1.00 -78.65 402.85 2.96 -75.70 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.18 Total: 20.25 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 6.11 Total: -4.91 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -4.08 Total: -85.85 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.11 Total: -41.13 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.17 kcal Total: -78.65 2.96 -75.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.784 kcal (2) G-P(sol) polarization free energy of solvation -78.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds