Wall clock time and date at job start Sat Apr 11 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32995 * 120.00149 * 2 1 4 4 C 1.50704 * 119.99857 * 359.97438 * 3 2 1 5 5 C 1.47094 * 120.00082 * 179.97438 * 3 2 1 6 6 O 1.21611 * 120.00380 * 0.02562 * 5 3 2 7 7 N 1.34779 * 119.99877 * 179.97438 * 5 3 2 8 8 C 1.46496 * 120.00054 * 180.02562 * 7 5 3 9 9 H 1.09000 * 109.46287 * 34.97165 * 8 7 5 10 10 C 1.53046 * 109.45960 * 275.00249 * 8 7 5 11 11 C 1.53194 * 109.31320 * 178.61579 * 10 8 7 12 12 N 1.46930 * 108.77657 * 54.63255 * 11 10 8 13 13 C 1.34772 * 120.62734 * 126.41522 * 12 11 10 14 14 O 1.21279 * 119.99608 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00243 * 0.02562 * 13 12 11 16 16 S 1.80998 * 109.47106 * 180.02562 * 15 13 12 17 17 C 1.76205 * 100.00217 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99406 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00056 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99952 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00314 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47140 * 90.00130 * 21 19 17 23 23 H 1.48500 * 109.47116 * 210.00366 * 21 19 17 24 24 H 1.48504 * 109.46677 * 330.00159 * 21 19 17 25 25 C 1.46921 * 118.73791 * 306.38852 * 12 11 10 26 26 C 1.53041 * 109.46537 * 154.93551 * 8 7 5 27 27 H 1.09001 * 109.49974 * 61.42755 * 26 8 7 28 28 C 1.53003 * 109.49028 * 301.33639 * 26 8 7 29 29 H 1.09002 * 109.47152 * 60.00214 * 1 2 3 30 30 H 1.09001 * 109.46980 * 300.00315 * 1 2 3 31 31 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.07996 * 119.99751 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47316 * 89.99779 * 4 3 2 34 34 H 1.08997 * 109.47044 * 210.00596 * 4 3 2 35 35 H 1.09000 * 109.46873 * 330.00365 * 4 3 2 36 36 H 0.97006 * 120.00269 * 0.02562 * 7 5 3 37 37 H 1.08999 * 109.49689 * 298.56446 * 10 8 7 38 38 H 1.09000 * 109.49951 * 58.63070 * 10 8 7 39 39 H 1.09000 * 109.58494 * 174.42128 * 11 10 8 40 40 H 1.09001 * 109.58278 * 294.69845 * 11 10 8 41 41 H 1.09001 * 109.46858 * 299.99762 * 15 13 12 42 42 H 1.08995 * 109.47362 * 60.00092 * 15 13 12 43 43 H 0.96999 * 120.00339 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.58590 * 173.39628 * 25 12 11 45 45 H 1.08993 * 109.58985 * 293.68329 * 25 12 11 46 46 H 1.08992 * 109.47416 * 60.00037 * 28 26 8 47 47 H 1.09002 * 109.46924 * 179.97438 * 28 26 8 48 48 H 1.09003 * 109.47468 * 299.99484 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2511 0.0986 0.0006 7 7 4.3169 2.3190 0.0000 8 6 5.7818 2.3190 0.0000 9 1 6.1450 1.4766 -0.5886 10 6 6.2917 2.1938 1.4376 11 6 7.8232 2.1594 1.4309 12 7 8.3197 3.3428 0.7154 13 6 9.2139 4.1693 1.2929 14 8 9.6164 5.1426 0.6917 15 6 9.7144 3.8835 2.6853 16 16 10.8944 5.1649 3.1771 17 6 11.3047 4.5986 4.7945 18 1 10.8493 3.6999 5.1835 19 6 12.2122 5.3080 5.5687 20 7 12.5183 4.8852 6.7771 21 14 12.9992 6.8629 4.8960 22 1 12.1595 8.0355 5.2495 23 1 14.3524 7.0274 5.4851 24 1 13.1113 6.7615 3.4187 25 6 7.8233 3.6075 -0.6419 26 6 6.2918 3.6258 -0.6118 27 1 5.9497 4.4674 -0.0095 28 6 5.7547 3.7656 -2.0376 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.0470 -0.9353 0.0004 33 1 1.2364 2.7718 1.0269 34 1 2.0077 3.2164 -0.5144 35 1 0.4663 2.3264 -0.5147 36 1 3.8319 3.1591 -0.0003 37 1 5.9496 3.0489 2.0207 38 1 5.9086 1.2746 1.8808 39 1 8.1935 2.1701 2.4560 40 1 8.1661 1.2551 0.9280 41 1 8.8741 3.8782 3.3795 42 1 10.2059 2.9108 2.7023 43 1 13.1528 5.3808 7.3182 44 1 8.1936 4.5738 -0.9844 45 1 8.1683 2.8240 -1.3165 46 1 4.6650 3.7757 -2.0161 47 1 6.1177 4.6967 -2.4729 48 1 6.0984 2.9244 -2.6396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073867820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:24 Heat of formation + Delta-G solvation = -70.235023 kcal Electronic energy + Delta-G solvation = -27273.575051 eV Core-core repulsion = 23454.486950 eV Total energy + Delta-G solvation = -3819.088101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.73339 -39.67685 -37.72613 -35.89115 -34.92281 -33.30290 -32.43885 -31.42974 -29.77703 -29.48710 -26.82106 -26.53615 -25.63195 -24.96228 -22.76567 -21.73803 -20.88756 -19.47671 -18.66726 -17.70581 -17.40794 -16.96912 -16.39644 -15.85311 -15.55860 -15.26459 -14.97576 -14.90428 -14.54623 -14.13659 -13.98283 -13.88378 -13.81837 -13.51214 -13.29951 -13.08508 -12.93962 -12.84083 -12.77992 -12.56803 -12.37273 -12.22318 -12.01249 -11.74522 -11.72568 -11.34863 -11.28490 -11.23566 -11.01125 -10.75098 -10.58215 -10.16250 -9.85938 -9.55462 -9.49004 -9.26150 -9.00538 -8.64389 -8.49232 -6.92197 -6.28832 -4.00703 0.99211 2.68802 2.79917 2.95704 2.97794 3.18232 3.32876 3.50364 3.58358 4.20114 4.32876 4.35094 4.45201 4.47693 4.57395 4.66300 4.71601 4.79010 4.86049 4.99793 5.00427 5.02666 5.10137 5.14337 5.16845 5.20828 5.24118 5.36475 5.38407 5.40706 5.48706 5.52515 5.56693 5.66447 5.74632 5.75641 5.82860 5.86446 5.98722 5.99311 6.01783 6.08299 6.22081 6.52639 7.20613 7.43331 7.93616 7.94158 8.41288 8.41965 9.17280 10.80344 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002170 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.438864 B =12897.938234 C =13611.157747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.194 4.194 4 C -0.118 4.118 5 C 0.554 3.446 6 O -0.543 6.543 7 N -0.720 5.720 8 C 0.151 3.849 9 H 0.091 0.909 10 C -0.145 4.145 11 C 0.110 3.890 12 N -0.620 5.620 13 C 0.535 3.465 14 O -0.519 6.519 15 C -0.122 4.122 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.122 3.878 26 C -0.113 4.113 27 H 0.081 0.919 28 C -0.144 4.144 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.400 0.600 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.098 0.902 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.050 -7.418 -16.906 31.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.197 4.197 4 C -0.175 4.175 5 C 0.343 3.657 6 O -0.422 6.422 7 N -0.371 5.371 8 C 0.047 3.953 9 H 0.109 0.891 10 C -0.185 4.185 11 C -0.014 4.014 12 N -0.355 5.355 13 C 0.323 3.677 14 O -0.394 6.394 15 C -0.273 4.273 16 S 0.083 5.917 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.001 4.001 26 C -0.133 4.133 27 H 0.100 0.900 28 C -0.202 4.202 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.881 -6.683 -17.623 30.423 hybrid contribution -0.311 -0.180 0.853 0.925 sum -24.192 -6.862 -16.770 30.225 Atomic orbital electron populations 1.21004 0.92083 1.03162 1.02609 1.23596 0.96301 0.97983 0.91364 1.21428 0.92704 0.96827 1.08788 1.20827 1.00111 0.93935 1.02617 1.18391 0.87725 0.83683 0.75899 1.90794 1.70072 1.31209 1.50124 1.46018 1.07143 1.08645 1.75285 1.21013 0.79097 0.98645 0.96588 0.89054 1.22331 0.95719 1.03490 0.96912 1.21709 0.93181 0.87885 0.98592 1.48105 1.44425 1.26738 1.16270 1.20299 0.77843 0.81859 0.87700 1.90684 1.56578 1.27688 1.64429 1.23315 1.03518 1.05181 0.95237 1.84780 1.52357 1.34218 1.20307 1.22308 1.31081 1.15263 0.98170 0.89388 1.24715 0.95074 0.97514 0.94035 1.69939 1.33313 1.39561 1.08845 0.86732 0.79470 0.83492 0.82137 1.19235 1.19945 1.15923 1.21529 0.91480 1.03507 0.83618 1.21805 0.96404 0.97441 0.97674 0.90016 1.21757 1.00905 1.02409 0.95102 0.90623 0.90673 0.91338 0.85581 0.90841 0.91852 0.90865 0.76467 0.90998 0.90007 0.88713 0.90965 0.88550 0.88441 0.91947 0.88329 0.91412 0.92397 0.91877 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.53 8.91 36.01 0.32 -0.21 16 2 C -0.07 -0.50 9.84 -36.12 -0.36 -0.85 16 3 C -0.19 -1.43 6.00 -102.85 -0.62 -2.05 16 4 C -0.12 -0.53 9.14 36.01 0.33 -0.20 16 5 C 0.55 5.52 7.71 -12.67 -0.10 5.43 16 6 O -0.54 -7.45 15.88 5.27 0.08 -7.36 16 7 N -0.72 -5.76 4.31 -54.95 -0.24 -6.00 16 8 C 0.15 1.38 1.88 -67.89 -0.13 1.25 16 9 H 0.09 0.97 7.57 -51.93 -0.39 0.57 16 10 C -0.15 -1.45 5.65 -26.61 -0.15 -1.60 16 11 C 0.11 1.22 6.34 -3.71 -0.02 1.20 16 12 N -0.62 -8.30 2.97 -172.77 -0.51 -8.82 16 13 C 0.54 9.62 7.72 -10.99 -0.08 9.53 16 14 O -0.52 -11.12 15.27 5.56 0.08 -11.04 16 15 C -0.12 -2.38 4.50 36.00 0.16 -2.22 16 16 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 17 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 20 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 21 Si 0.86 21.81 27.74 -169.99 -4.72 17.10 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 25 C 0.12 1.36 5.72 -3.71 -0.02 1.34 16 26 C -0.11 -0.98 2.46 -90.50 -0.22 -1.20 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 C -0.14 -1.00 9.03 37.16 0.34 -0.66 16 29 H 0.08 0.24 7.40 -51.93 -0.38 -0.15 16 30 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.13 1.02 7.49 -52.49 -0.39 0.63 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.23 6.70 -51.93 -0.35 -0.12 16 35 H 0.07 0.25 6.49 -51.93 -0.34 -0.09 16 36 H 0.40 2.35 6.41 -40.82 -0.26 2.09 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 1.76 7.69 -51.91 -0.40 1.36 16 42 H 0.10 1.79 7.94 -51.92 -0.41 1.38 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.10 1.25 7.01 -51.93 -0.36 0.89 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.34 7.36 -51.93 -0.38 -0.04 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 395.80 15.07 5.96 5.96 Total: -1.00 -35.46 395.80 -8.67 -44.14 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.79 Total: -0.33 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.34 Total: -2.23 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.02 Total: -40.61 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.17 Total: -18.40 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.10 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.46 -8.67 -44.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073867820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.096 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds