Wall clock time and date at job start Sat Apr 11 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32995 * 120.00149 * 2 1 4 4 C 1.50704 * 119.99857 * 359.97438 * 3 2 1 5 5 C 1.47094 * 120.00082 * 179.97438 * 3 2 1 6 6 O 1.21611 * 120.00380 * 0.02562 * 5 3 2 7 7 N 1.34779 * 119.99877 * 179.97438 * 5 3 2 8 8 C 1.46496 * 120.00054 * 180.02562 * 7 5 3 9 9 H 1.09000 * 109.46287 * 34.97165 * 8 7 5 10 10 C 1.53046 * 109.45960 * 275.00249 * 8 7 5 11 11 C 1.53194 * 109.31320 * 178.61579 * 10 8 7 12 12 N 1.46930 * 108.77657 * 54.63255 * 11 10 8 13 13 C 1.34772 * 120.62734 * 126.41522 * 12 11 10 14 14 O 1.21279 * 119.99608 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00243 * 0.02562 * 13 12 11 16 16 S 1.80998 * 109.47106 * 180.02562 * 15 13 12 17 17 C 1.76205 * 100.00217 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99406 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00056 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99952 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00314 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47140 * 90.00130 * 21 19 17 23 23 H 1.48500 * 109.47116 * 210.00366 * 21 19 17 24 24 H 1.48504 * 109.46677 * 330.00159 * 21 19 17 25 25 C 1.46921 * 118.73791 * 306.38852 * 12 11 10 26 26 C 1.53041 * 109.46537 * 154.93551 * 8 7 5 27 27 H 1.09001 * 109.49974 * 61.42755 * 26 8 7 28 28 C 1.53003 * 109.49028 * 301.33639 * 26 8 7 29 29 H 1.09002 * 109.47152 * 60.00214 * 1 2 3 30 30 H 1.09001 * 109.46980 * 300.00315 * 1 2 3 31 31 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 32 32 H 1.07996 * 119.99751 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47316 * 89.99779 * 4 3 2 34 34 H 1.08997 * 109.47044 * 210.00596 * 4 3 2 35 35 H 1.09000 * 109.46873 * 330.00365 * 4 3 2 36 36 H 0.97006 * 120.00269 * 0.02562 * 7 5 3 37 37 H 1.08999 * 109.49689 * 298.56446 * 10 8 7 38 38 H 1.09000 * 109.49951 * 58.63070 * 10 8 7 39 39 H 1.09000 * 109.58494 * 174.42128 * 11 10 8 40 40 H 1.09001 * 109.58278 * 294.69845 * 11 10 8 41 41 H 1.09001 * 109.46858 * 299.99762 * 15 13 12 42 42 H 1.08995 * 109.47362 * 60.00092 * 15 13 12 43 43 H 0.96999 * 120.00339 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.58590 * 173.39628 * 25 12 11 45 45 H 1.08993 * 109.58985 * 293.68329 * 25 12 11 46 46 H 1.08992 * 109.47416 * 60.00037 * 28 26 8 47 47 H 1.09002 * 109.46924 * 179.97438 * 28 26 8 48 48 H 1.09003 * 109.47468 * 299.99484 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2511 0.0986 0.0006 7 7 4.3169 2.3190 0.0000 8 6 5.7818 2.3190 0.0000 9 1 6.1450 1.4766 -0.5886 10 6 6.2917 2.1938 1.4376 11 6 7.8232 2.1594 1.4309 12 7 8.3197 3.3428 0.7154 13 6 9.2139 4.1693 1.2929 14 8 9.6164 5.1426 0.6917 15 6 9.7144 3.8835 2.6853 16 16 10.8944 5.1649 3.1771 17 6 11.3047 4.5986 4.7945 18 1 10.8493 3.6999 5.1835 19 6 12.2122 5.3080 5.5687 20 7 12.5183 4.8852 6.7771 21 14 12.9992 6.8629 4.8960 22 1 12.1595 8.0355 5.2495 23 1 14.3524 7.0274 5.4851 24 1 13.1113 6.7615 3.4187 25 6 7.8233 3.6075 -0.6419 26 6 6.2918 3.6258 -0.6118 27 1 5.9497 4.4674 -0.0095 28 6 5.7547 3.7656 -2.0376 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.0470 -0.9353 0.0004 33 1 1.2364 2.7718 1.0269 34 1 2.0077 3.2164 -0.5144 35 1 0.4663 2.3264 -0.5147 36 1 3.8319 3.1591 -0.0003 37 1 5.9496 3.0489 2.0207 38 1 5.9086 1.2746 1.8808 39 1 8.1935 2.1701 2.4560 40 1 8.1661 1.2551 0.9280 41 1 8.8741 3.8782 3.3795 42 1 10.2059 2.9108 2.7023 43 1 13.1528 5.3808 7.3182 44 1 8.1936 4.5738 -0.9844 45 1 8.1683 2.8240 -1.3165 46 1 4.6650 3.7757 -2.0161 47 1 6.1177 4.6967 -2.4729 48 1 6.0984 2.9244 -2.6396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073867820.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:23 Heat of formation + Delta-G solvation = -93.153931 kcal Electronic energy + Delta-G solvation = -27274.568890 eV Core-core repulsion = 23454.486950 eV Total energy + Delta-G solvation = -3820.081940 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.65977 -40.72931 -38.79388 -36.44961 -35.94679 -34.67830 -34.12327 -32.32798 -31.11400 -30.00976 -27.92534 -27.49605 -27.09141 -25.91639 -23.66036 -22.45467 -21.74393 -20.71811 -19.65444 -19.31762 -18.33374 -17.91663 -17.32237 -17.20884 -16.95508 -16.71770 -16.15148 -15.78709 -15.63661 -15.28949 -15.00824 -14.92712 -14.64503 -14.58588 -14.32849 -14.22873 -13.75010 -13.57168 -13.41247 -13.35292 -13.33602 -13.23235 -13.03118 -12.97660 -12.83091 -12.73979 -12.44054 -12.19854 -12.16228 -12.01282 -11.87003 -11.54476 -11.17637 -11.00537 -10.92188 -10.54179 -10.20502 -9.88251 -9.78095 -9.01000 -8.51948 -6.23221 0.40529 0.96183 1.30991 1.45154 1.47731 1.53254 2.00807 2.16532 2.24597 2.27774 2.66627 2.86097 3.39155 3.58521 3.70441 3.76742 3.83123 3.98909 4.01404 4.15268 4.19113 4.29024 4.30884 4.37384 4.42262 4.47283 4.58542 4.64628 4.67170 4.74988 4.76257 4.83769 4.86136 4.91144 4.99215 5.03424 5.07646 5.17075 5.18759 5.29342 5.42429 5.48578 5.53086 5.66825 5.70158 6.10764 6.17798 6.55091 6.92909 7.03708 7.22381 8.60394 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002170 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.438864 B =12897.938234 C =13611.157747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 C -0.206 4.206 4 C -0.115 4.115 5 C 0.548 3.452 6 O -0.589 6.589 7 N -0.707 5.707 8 C 0.156 3.844 9 H 0.080 0.920 10 C -0.138 4.138 11 C 0.106 3.894 12 N -0.605 5.605 13 C 0.538 3.462 14 O -0.559 6.559 15 C -0.109 4.109 16 S -0.173 6.173 17 C -0.529 4.529 18 H 0.061 0.939 19 C 0.045 3.955 20 N -0.916 5.916 21 Si 0.915 3.085 22 H -0.261 1.261 23 H -0.259 1.259 24 H -0.237 1.237 25 C 0.118 3.882 26 C -0.101 4.101 27 H 0.082 0.918 28 C -0.140 4.140 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.277 0.723 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.160 -6.830 -18.423 33.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 C -0.209 4.209 4 C -0.171 4.171 5 C 0.339 3.661 6 O -0.471 6.471 7 N -0.358 5.358 8 C 0.051 3.949 9 H 0.098 0.902 10 C -0.177 4.177 11 C -0.017 4.017 12 N -0.339 5.339 13 C 0.325 3.675 14 O -0.437 6.437 15 C -0.260 4.260 16 S 0.054 5.946 17 C -0.677 4.677 18 H 0.080 0.920 19 C -0.161 4.161 20 N -0.554 5.554 21 Si 0.737 3.263 22 H -0.186 1.186 23 H -0.183 1.183 24 H -0.161 1.161 25 C -0.005 4.005 26 C -0.120 4.120 27 H 0.100 0.900 28 C -0.197 4.197 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.251 0.749 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.039 -6.101 -19.149 32.893 hybrid contribution 0.225 -0.545 1.287 1.416 sum -25.814 -6.646 -17.861 32.087 Atomic orbital electron populations 1.21042 0.89691 1.03993 1.03673 1.23772 0.98008 0.97092 0.90478 1.21533 0.91250 0.98460 1.09634 1.20870 1.00519 0.92367 1.03366 1.18896 0.88929 0.83295 0.75010 1.90770 1.71151 1.32776 1.52381 1.45880 1.06631 1.08908 1.74363 1.20879 0.79826 0.98453 0.95772 0.90187 1.22242 0.94665 1.03242 0.97549 1.21893 0.94029 0.87339 0.98443 1.48072 1.42668 1.26135 1.16999 1.19951 0.78585 0.82044 0.86908 1.90671 1.58440 1.29528 1.65080 1.23296 1.02431 1.03341 0.96886 1.84670 1.54736 1.37076 1.18111 1.22447 1.30847 1.14413 0.99948 0.92035 1.25577 0.95646 1.00513 0.94320 1.70017 1.34249 1.41115 1.10039 0.85857 0.79260 0.79812 0.81380 1.18594 1.18335 1.16071 1.21750 0.93168 1.03353 0.82221 1.21678 0.94392 0.96978 0.98987 0.90001 1.21736 1.01737 1.02684 0.93585 0.89166 0.89627 0.90785 0.87676 0.90241 0.90899 0.89348 0.74928 0.90949 0.90472 0.88942 0.89471 0.87159 0.87210 0.91359 0.89681 0.89844 0.90971 0.91386 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.73 8.91 71.24 0.63 -0.10 16 2 C -0.07 -0.93 9.84 24.52 0.24 -0.69 16 3 C -0.21 -2.71 6.00 -18.70 -0.11 -2.83 16 4 C -0.11 -0.70 9.14 71.24 0.65 -0.05 16 5 C 0.55 10.43 7.71 86.57 0.67 11.10 16 6 O -0.59 -16.22 15.88 -4.07 -0.06 -16.28 16 7 N -0.71 -10.07 4.31 -446.01 -1.92 -11.99 16 8 C 0.16 2.59 1.88 45.02 0.08 2.68 16 9 H 0.08 1.59 7.57 -2.39 -0.02 1.57 16 10 C -0.14 -2.56 5.65 30.67 0.17 -2.39 16 11 C 0.11 2.20 6.34 86.36 0.55 2.75 16 12 N -0.61 -15.42 2.97 -818.92 -2.43 -17.86 16 13 C 0.54 18.92 7.72 87.66 0.68 19.60 16 14 O -0.56 -23.78 15.27 -3.03 -0.05 -23.83 16 15 C -0.11 -4.19 4.50 71.23 0.32 -3.87 16 16 S -0.17 -8.77 18.55 -56.49 -1.05 -9.82 16 17 C -0.53 -30.94 10.04 67.95 0.68 -30.26 16 18 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 19 C 0.04 2.64 5.50 84.86 0.47 3.11 16 20 N -0.92 -55.96 13.97 21.65 0.30 -55.65 16 21 Si 0.92 45.08 27.74 68.60 1.90 46.99 16 22 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 25 C 0.12 2.43 5.72 86.36 0.49 2.92 16 26 C -0.10 -1.53 2.46 -10.71 -0.03 -1.56 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 C -0.14 -1.59 9.03 71.98 0.65 -0.94 16 29 H 0.09 0.29 7.40 -2.39 -0.02 0.28 16 30 H 0.09 0.36 8.10 -2.39 -0.02 0.34 16 31 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.11 1.76 7.49 -2.91 -0.02 1.73 16 33 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.07 0.30 6.70 -2.39 -0.02 0.28 16 35 H 0.09 0.29 6.49 -2.39 -0.02 0.28 16 36 H 0.41 3.79 6.41 -92.70 -0.59 3.19 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.99 5.93 -2.39 -0.01 1.97 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.11 3.94 7.69 -2.40 -0.02 3.92 16 42 H 0.11 3.96 7.94 -2.40 -0.02 3.94 16 43 H 0.28 15.63 8.31 -92.71 -0.77 14.85 16 44 H 0.08 2.07 7.01 -2.39 -0.02 2.05 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.07 0.64 7.36 -2.39 -0.02 0.62 16 47 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -78.01 395.80 3.17 -74.84 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.33 Total: 14.13 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 6.15 Total: -0.53 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -4.05 Total: -85.51 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.11 Total: -40.11 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.05 Total: -9.82 kcal Total: -78.01 3.17 -74.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073867820.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.309 kcal (2) G-P(sol) polarization free energy of solvation -78.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds