Wall clock time and date at job start Sat Apr 11 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32994 * 119.99463 * 2 1 4 4 C 1.50698 * 119.99604 * 179.97438 * 3 2 1 5 5 C 1.47104 * 120.00340 * 359.97438 * 3 2 1 6 6 O 1.21613 * 119.99921 * 0.02562 * 5 3 2 7 7 N 1.34774 * 119.99740 * 180.02562 * 5 3 2 8 8 C 1.46498 * 119.99758 * 180.02562 * 7 5 3 9 9 H 1.08997 * 109.46272 * 34.96835 * 8 7 5 10 10 C 1.53045 * 109.45801 * 275.00092 * 8 7 5 11 11 C 1.53192 * 109.31022 * 178.63065 * 10 8 7 12 12 N 1.46920 * 108.77858 * 54.63212 * 11 10 8 13 13 C 1.34779 * 120.62938 * 126.37145 * 12 11 10 14 14 O 1.21282 * 119.99922 * 180.02562 * 13 12 11 15 15 C 1.50699 * 120.00037 * 359.97438 * 13 12 11 16 16 S 1.81000 * 109.46881 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99929 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99720 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99847 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00398 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47367 * 59.99618 * 21 19 17 23 23 H 1.48498 * 109.47311 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46831 * 299.99623 * 21 19 17 25 25 C 1.46930 * 118.74035 * 306.64020 * 12 11 10 26 26 C 1.52762 * 109.00418 * 53.31267 * 25 12 11 27 27 H 1.08997 * 109.36488 * 65.49751 * 26 25 12 28 28 C 1.52999 * 109.59157 * 185.53710 * 26 25 12 29 29 H 1.09004 * 109.47043 * 60.00499 * 1 2 3 30 30 H 1.09006 * 109.46548 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47211 * 300.00300 * 1 2 3 32 32 H 1.07996 * 119.99865 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.47433 * 269.99917 * 4 3 2 34 34 H 1.09004 * 109.47580 * 30.00060 * 4 3 2 35 35 H 1.08999 * 109.47336 * 149.99567 * 4 3 2 36 36 H 0.96998 * 120.00344 * 0.02562 * 7 5 3 37 37 H 1.08993 * 109.50030 * 58.67477 * 10 8 7 38 38 H 1.08997 * 109.52093 * 298.58979 * 10 8 7 39 39 H 1.09001 * 109.58582 * 294.84479 * 11 10 8 40 40 H 1.09004 * 109.58689 * 174.42074 * 11 10 8 41 41 H 1.09000 * 109.47247 * 60.00371 * 15 13 12 42 42 H 1.09001 * 109.47358 * 299.99798 * 15 13 12 43 43 H 0.96996 * 120.00393 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.58572 * 173.14546 * 25 12 11 45 45 H 1.09000 * 109.58689 * 293.57323 * 25 12 11 46 46 H 1.08997 * 109.47201 * 179.97438 * 28 26 25 47 47 H 1.08999 * 109.46651 * 299.98448 * 28 26 25 48 48 H 1.09008 * 109.47185 * 59.97850 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6789 1.1519 0.0006 5 6 1.4364 2.4258 -0.0006 6 8 0.2202 2.4257 -0.0006 7 7 2.1102 3.5929 -0.0011 8 6 1.3777 4.8616 -0.0011 9 1 0.4670 4.7551 0.5883 10 6 1.0133 5.2399 -1.4386 11 6 0.2180 6.5492 -1.4318 12 7 0.9953 7.5710 -0.7174 13 6 1.2645 8.7581 -1.2961 14 8 1.9076 9.5932 -0.6962 15 6 0.7675 9.0472 -2.6891 16 16 1.2877 10.7092 -3.1824 17 6 0.5916 10.7803 -4.7996 18 1 0.0405 9.9365 -5.1878 19 6 0.7525 11.9203 -5.5748 20 7 1.4246 12.9485 -5.1018 21 14 0.0140 11.9960 -7.2889 22 1 -1.4588 11.8265 -7.2014 23 1 0.3257 13.3108 -7.9047 24 1 0.5884 10.9104 -8.1237 25 6 1.4786 7.2720 0.6375 26 6 2.2552 5.9567 0.6096 27 1 3.1546 6.0808 0.0065 28 6 2.6467 5.5618 2.0350 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.0470 -0.9353 0.0004 33 1 4.0419 1.1521 1.0284 34 1 4.0426 0.2618 -0.5129 35 1 4.0425 2.0417 -0.5134 36 1 3.0802 3.5930 -0.0015 37 1 0.4079 4.4487 -1.8807 38 1 1.9241 5.3706 -2.0228 39 1 -0.7351 6.3951 -0.9258 40 1 0.0414 6.8748 -2.4569 41 1 -0.3207 8.9867 -2.7065 42 1 1.1832 8.3160 -3.3824 43 1 1.5367 13.7453 -5.6434 44 1 2.1336 8.0743 0.9772 45 1 0.6304 7.1780 1.3156 46 1 3.2001 4.6231 2.0129 47 1 3.2715 6.3421 2.4695 48 1 1.7470 5.4389 2.6381 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073867821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:26 Heat of formation + Delta-G solvation = -66.814799 kcal Electronic energy + Delta-G solvation = -27438.155076 eV Core-core repulsion = 23619.215287 eV Total energy + Delta-G solvation = -3818.939789 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.73357 -39.66623 -37.69719 -35.33225 -34.89420 -33.32154 -32.42846 -31.45473 -30.07310 -29.50325 -26.68820 -25.70354 -25.39604 -24.77944 -22.79970 -22.15779 -20.82475 -19.68257 -18.91898 -17.68218 -16.96736 -16.63346 -16.12774 -15.80244 -15.51924 -15.16451 -14.80270 -14.70705 -14.55745 -14.11891 -14.03285 -13.88574 -13.58238 -13.41279 -13.22188 -12.99712 -12.96837 -12.76515 -12.62745 -12.32728 -12.29709 -12.18275 -11.90146 -11.84715 -11.64455 -11.28620 -11.20969 -11.03746 -11.03494 -10.77095 -10.67735 -9.83295 -9.81376 -9.55144 -9.37689 -9.14781 -9.05805 -8.55454 -8.22993 -6.50135 -6.21297 -3.92052 1.04525 2.85605 2.92342 2.97162 3.08269 3.23726 3.26007 3.29303 3.59053 4.20405 4.25051 4.38485 4.44852 4.53532 4.63894 4.81550 4.90053 4.90731 4.98614 5.05459 5.12727 5.13721 5.19988 5.23364 5.29651 5.39713 5.41629 5.48401 5.54829 5.56494 5.58073 5.61657 5.70448 5.74754 5.79609 5.87399 5.88659 5.92780 6.04994 6.08385 6.12054 6.20493 6.26233 6.61619 7.24987 7.53681 7.59624 7.97489 8.35212 8.54675 9.23849 10.86042 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.002258 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.440725 B =12398.713991 C =13372.869019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.068 4.068 3 C -0.200 4.200 4 C -0.115 4.115 5 C 0.551 3.449 6 O -0.536 6.536 7 N -0.721 5.721 8 C 0.152 3.848 9 H 0.091 0.909 10 C -0.145 4.145 11 C 0.112 3.888 12 N -0.621 5.621 13 C 0.536 3.464 14 O -0.517 6.517 15 C -0.151 4.151 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.122 3.878 26 C -0.114 4.114 27 H 0.081 0.919 28 C -0.143 4.143 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.399 0.601 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -26.539 12.807 29.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.088 4.088 3 C -0.203 4.203 4 C -0.172 4.172 5 C 0.340 3.660 6 O -0.415 6.415 7 N -0.373 5.373 8 C 0.048 3.952 9 H 0.109 0.891 10 C -0.184 4.184 11 C -0.012 4.012 12 N -0.357 5.357 13 C 0.324 3.676 14 O -0.391 6.391 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.001 4.001 26 C -0.134 4.134 27 H 0.099 0.901 28 C -0.201 4.201 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.234 0.766 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.534 -25.067 13.664 28.662 hybrid contribution -0.643 -1.052 -1.906 2.270 sum 1.892 -26.119 11.757 28.706 Atomic orbital electron populations 1.21039 0.91648 1.00998 1.04224 1.23651 0.97324 0.96653 0.91123 1.21475 0.96367 0.93242 1.09231 1.20767 0.90956 1.02989 1.02438 1.18397 0.87293 0.84051 0.76248 1.90792 1.13492 1.87532 1.49713 1.46047 1.10300 1.05475 1.75452 1.20993 0.95719 0.81997 0.96512 0.89109 1.22328 1.01490 0.97652 0.96949 1.21678 0.94002 0.86992 0.98562 1.48137 1.55674 1.15593 1.16341 1.20337 0.78912 0.80584 0.87733 1.90688 1.38705 1.45248 1.64468 1.23558 1.04202 1.07249 0.95138 1.85389 1.71787 1.08122 1.18129 1.22817 1.40331 1.04373 1.00833 0.90998 1.24986 0.95049 0.94659 0.98863 1.70003 1.38285 1.04618 1.37380 0.86232 0.79465 0.77522 0.82327 1.19917 1.20812 1.19954 1.21427 0.98577 0.96316 0.83829 1.21729 0.99252 0.94721 0.97673 0.90089 1.21751 1.01787 1.01475 0.95106 0.89992 0.93047 0.90089 0.85914 0.91106 0.91148 0.91733 0.76560 0.90140 0.91087 0.91160 0.88832 0.89218 0.89280 0.92132 0.88330 0.91577 0.92401 0.91884 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 8.45 36.01 0.30 -0.66 16 2 C -0.07 -0.46 9.95 -36.12 -0.36 -0.82 16 3 C -0.20 -1.47 6.00 -102.85 -0.62 -2.08 16 4 C -0.11 -0.53 9.61 36.00 0.35 -0.19 16 5 C 0.55 5.30 7.68 -12.67 -0.10 5.21 16 6 O -0.54 -6.74 12.73 5.27 0.07 -6.67 16 7 N -0.72 -5.79 4.31 -54.95 -0.24 -6.03 16 8 C 0.15 1.41 1.88 -67.89 -0.13 1.28 16 9 H 0.09 0.96 7.57 -51.93 -0.39 0.57 16 10 C -0.14 -1.46 5.65 -26.61 -0.15 -1.61 16 11 C 0.11 1.27 6.34 -3.71 -0.02 1.25 16 12 N -0.62 -8.72 2.98 -173.03 -0.52 -9.23 16 13 C 0.54 10.14 7.72 -10.99 -0.08 10.06 16 14 O -0.52 -11.69 15.28 5.56 0.08 -11.61 16 15 C -0.15 -3.07 4.50 36.01 0.16 -2.91 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 21 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C 0.12 1.43 5.69 -3.93 -0.02 1.40 16 26 C -0.11 -1.03 2.44 -90.72 -0.22 -1.25 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 C -0.14 -1.04 9.03 37.16 0.34 -0.71 16 29 H 0.08 0.78 7.22 -51.93 -0.37 0.41 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.75 7.22 -51.93 -0.37 0.38 16 32 H 0.12 0.54 8.06 -52.49 -0.42 0.11 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 35 H 0.06 0.27 6.70 -51.93 -0.35 -0.08 16 36 H 0.40 2.43 6.41 -40.82 -0.26 2.17 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.09 5.93 -51.93 -0.31 0.79 16 41 H 0.09 1.70 7.94 -51.92 -0.41 1.29 16 42 H 0.09 1.68 7.69 -51.91 -0.40 1.28 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.10 1.32 7.01 -51.93 -0.36 0.96 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.36 7.36 -51.93 -0.38 -0.02 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -35.01 396.47 -9.29 -44.30 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.81 Total: 0.14 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.36 Total: -3.98 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: -0.02 Total: -40.70 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.15 Total: -18.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.01 -9.29 -44.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073867821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.511 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds