Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32994 * 120.00064 * 2 1 4 4 C 1.50696 * 120.00058 * 179.97438 * 3 2 1 5 5 C 1.47103 * 119.99911 * 359.97438 * 3 2 1 6 6 O 1.21617 * 119.99879 * 0.02562 * 5 3 2 7 7 N 1.34773 * 119.99960 * 180.02562 * 5 3 2 8 8 C 1.46497 * 119.99750 * 180.27766 * 7 5 3 9 9 H 1.08995 * 109.46660 * 34.74650 * 8 7 5 10 10 C 1.53041 * 109.45998 * 274.78450 * 8 7 5 11 11 C 1.53189 * 109.31527 * 301.35370 * 10 8 7 12 12 N 1.46938 * 108.77302 * 305.35902 * 11 10 8 13 13 C 1.34772 * 120.62756 * 233.58966 * 12 11 10 14 14 O 1.21284 * 119.99573 * 185.73336 * 13 12 11 15 15 C 1.50699 * 120.00536 * 5.73566 * 13 12 11 16 16 S 1.80994 * 109.47186 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00065 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99794 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00278 * 179.97438 * 17 16 15 20 20 N 1.31631 * 119.99975 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00123 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47332 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47382 * 120.00059 * 21 19 17 24 24 H 1.48502 * 109.47198 * 239.99929 * 21 19 17 25 25 C 1.46923 * 118.73681 * 53.60722 * 12 11 10 26 26 H 1.09008 * 109.58553 * 66.18103 * 25 12 11 27 27 C 1.52994 * 109.58431 * 186.60431 * 25 12 11 28 28 C 1.53047 * 109.45700 * 154.72268 * 8 7 5 29 29 H 1.08999 * 109.46873 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46902 * 300.00390 * 1 2 3 31 31 H 1.08995 * 109.46540 * 60.00362 * 1 2 3 32 32 H 1.08004 * 119.99884 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.47013 * 270.00084 * 4 3 2 34 34 H 1.09000 * 109.47155 * 29.99211 * 4 3 2 35 35 H 1.08994 * 109.47189 * 149.99650 * 4 3 2 36 36 H 0.97000 * 119.99743 * 359.97438 * 7 5 3 37 37 H 1.09002 * 109.49372 * 61.29803 * 10 8 7 38 38 H 1.08994 * 109.50221 * 181.39448 * 10 8 7 39 39 H 1.09003 * 109.59149 * 185.57510 * 11 10 8 40 40 H 1.09000 * 109.71055 * 65.21408 * 11 10 8 41 41 H 1.09001 * 109.47266 * 300.00048 * 15 13 12 42 42 H 1.09001 * 109.47034 * 59.99809 * 15 13 12 43 43 H 0.96995 * 120.00227 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.46974 * 173.75256 * 27 25 12 45 45 H 1.08999 * 109.47188 * 293.75442 * 27 25 12 46 46 H 1.08998 * 109.47158 * 53.75829 * 27 25 12 47 47 H 1.09006 * 109.49493 * 178.60072 * 28 8 7 48 48 H 1.08993 * 109.49717 * 298.66731 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 0.2203 2.4257 -0.0006 7 7 2.1104 3.5929 -0.0011 8 6 1.3779 4.8615 0.0045 9 1 0.4674 4.7527 0.5938 10 6 1.0127 5.2457 -1.4312 11 6 2.2922 5.3642 -2.2651 12 7 3.2036 6.3066 -1.6016 13 6 3.7130 7.3578 -2.2738 14 8 4.5436 8.0685 -1.7485 15 6 3.2506 7.6501 -3.6780 16 16 4.1132 9.1124 -4.3051 17 6 3.4025 9.2205 -5.9138 18 1 2.6652 8.4966 -6.2282 19 6 3.7894 10.2366 -6.7767 20 7 4.6876 11.1191 -6.3934 21 14 3.0364 10.3507 -8.4823 22 1 2.0609 9.2465 -8.6677 23 1 2.3424 11.6551 -8.6309 24 1 4.1078 10.2408 -9.5048 25 6 3.5492 6.0809 -0.1915 26 1 4.1291 5.1625 -0.0999 27 6 4.3685 7.2626 0.3311 28 6 2.2556 5.9543 0.6192 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 2.0471 -0.9353 0.0004 33 1 4.0419 1.1520 1.0284 34 1 4.0425 0.2616 -0.5128 35 1 4.0425 2.0415 -0.5133 36 1 3.0804 3.5928 -0.0007 37 1 0.3685 4.4783 -1.8604 38 1 0.4893 6.2018 -1.4301 39 1 2.0466 5.7332 -3.2609 40 1 2.7707 4.3880 -2.3449 41 1 3.4713 6.7961 -4.3184 42 1 2.1763 7.8345 -3.6758 43 1 4.9583 11.8290 -6.9965 44 1 4.5293 7.1474 1.4031 45 1 5.3310 7.2916 -0.1796 46 1 3.8289 8.1906 0.1424 47 1 1.7205 6.9038 0.6009 48 1 2.4955 5.6916 1.6494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074924542.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = -69.632880 kcal Electronic energy + Delta-G solvation = -27978.791550 eV Core-core repulsion = 24159.729560 eV Total energy + Delta-G solvation = -3819.061990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.88723 -40.76404 -38.62424 -35.93028 -35.47847 -34.59298 -34.24868 -32.58060 -30.73319 -30.26655 -28.37397 -27.63706 -25.94139 -25.60325 -23.81788 -23.32489 -21.56612 -20.42279 -20.11520 -19.34354 -17.80645 -17.33236 -17.31744 -17.01750 -16.88581 -16.44267 -16.22902 -15.76664 -15.32370 -15.15371 -15.07153 -14.72615 -14.69698 -14.49390 -14.37088 -13.87806 -13.73335 -13.62180 -13.44051 -13.36151 -13.28493 -13.12343 -12.93834 -12.82475 -12.78495 -12.63974 -12.58576 -12.31538 -12.12330 -12.00473 -11.76412 -11.69962 -11.16478 -10.54063 -10.27752 -10.21738 -10.11675 -9.81383 -9.56960 -8.66230 -8.35667 -6.12846 0.47797 1.25665 1.40067 1.45144 1.56272 1.60924 2.06690 2.25694 2.27240 2.30785 2.98510 3.24351 3.53113 3.69461 3.77060 3.82235 3.89916 3.98331 4.01374 4.15267 4.24943 4.29831 4.33311 4.40598 4.46073 4.54289 4.62124 4.74061 4.80265 4.81568 4.85367 4.87640 4.91224 4.91611 4.95818 5.05536 5.06702 5.22525 5.27872 5.40108 5.41217 5.50538 5.59657 5.67294 5.72354 6.19027 6.30386 6.59479 7.06037 7.20998 7.28629 8.73646 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.002511 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.774905 B =11147.905876 C =12065.011580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.066 4.066 3 C -0.209 4.209 4 C -0.112 4.112 5 C 0.545 3.455 6 O -0.571 6.571 7 N -0.712 5.712 8 C 0.154 3.846 9 H 0.086 0.914 10 C -0.140 4.140 11 C 0.109 3.891 12 N -0.603 5.603 13 C 0.535 3.465 14 O -0.544 6.544 15 C -0.128 4.128 16 S -0.145 6.145 17 C -0.545 4.545 18 H 0.079 0.921 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.997 3.003 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.273 1.273 25 C 0.145 3.855 26 H 0.089 0.911 27 C -0.133 4.133 28 C -0.129 4.129 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.152 0.848 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.408 0.592 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.271 0.729 44 H 0.070 0.930 45 H 0.054 0.946 46 H 0.039 0.961 47 H 0.079 0.921 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 -23.868 15.850 29.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.086 4.086 3 C -0.212 4.212 4 C -0.169 4.169 5 C 0.335 3.665 6 O -0.453 6.453 7 N -0.366 5.366 8 C 0.049 3.951 9 H 0.104 0.896 10 C -0.179 4.179 11 C -0.014 4.014 12 N -0.339 5.339 13 C 0.322 3.678 14 O -0.422 6.422 15 C -0.279 4.279 16 S 0.082 5.918 17 C -0.693 4.693 18 H 0.097 0.903 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.198 1.198 25 C 0.043 3.957 26 H 0.107 0.893 27 C -0.190 4.190 28 C -0.167 4.167 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.169 0.831 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.246 0.754 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.097 0.903 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.470 -22.653 16.602 28.613 hybrid contribution -0.855 -0.131 -1.755 1.957 sum -6.326 -22.784 14.848 27.921 Atomic orbital electron populations 1.20959 0.92806 1.01551 1.02380 1.23901 0.96674 0.97790 0.90216 1.21621 0.97662 0.92236 1.09687 1.20802 0.88983 1.03767 1.03365 1.18847 0.87032 0.85054 0.75520 1.90780 1.15025 1.88065 1.51401 1.46044 1.10764 1.04881 1.74879 1.20792 0.95711 0.82712 0.95911 0.89608 1.22235 0.97030 1.02711 0.95913 1.21828 0.89755 0.93076 0.96732 1.48119 1.47606 1.26192 1.11934 1.19973 0.80855 0.80196 0.86737 1.90753 1.32984 1.49933 1.68494 1.23443 1.04449 1.03134 0.96917 1.85475 1.56759 1.33198 1.16351 1.23210 1.28636 1.17275 1.00168 0.90250 1.26097 0.95281 0.94083 1.03616 1.70178 1.30938 1.15404 1.38147 0.84933 0.78231 0.78614 0.76349 1.18185 1.19926 1.19849 1.21354 0.95902 0.99427 0.79052 0.89281 1.22036 1.00382 0.96588 0.99962 1.22260 0.95290 0.98925 1.00274 0.91208 0.91896 0.92025 0.83052 0.90033 0.89895 0.91557 0.75403 0.90343 0.90531 0.89622 0.89877 0.88027 0.88211 0.91992 0.91094 0.92703 0.94192 0.90255 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.45 71.24 0.60 -1.22 16 2 C -0.07 -0.79 9.95 24.52 0.24 -0.55 16 3 C -0.21 -2.75 6.00 -18.70 -0.11 -2.86 16 4 C -0.11 -0.85 9.61 71.23 0.68 -0.16 16 5 C 0.54 9.82 7.68 86.57 0.67 10.48 16 6 O -0.57 -14.03 12.73 -4.09 -0.05 -14.09 16 7 N -0.71 -10.19 4.21 -446.01 -1.88 -12.07 16 8 C 0.15 2.49 2.78 45.02 0.13 2.61 16 9 H 0.09 1.58 7.57 -2.39 -0.02 1.56 16 10 C -0.14 -2.55 5.77 30.67 0.18 -2.38 16 11 C 0.11 2.18 6.09 86.36 0.53 2.71 16 12 N -0.60 -15.15 2.97 -795.02 -2.36 -17.52 16 13 C 0.53 19.27 7.52 87.66 0.66 19.93 16 14 O -0.54 -23.46 11.43 -3.04 -0.03 -23.50 16 15 C -0.13 -5.11 4.51 71.24 0.32 -4.79 16 16 S -0.15 -8.01 20.57 -56.49 -1.16 -9.17 16 17 C -0.55 -31.16 9.50 67.95 0.65 -30.51 16 18 H 0.08 4.26 7.80 -2.91 -0.02 4.23 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -55.78 13.22 21.65 0.29 -55.49 16 21 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C 0.14 2.87 3.19 44.97 0.14 3.02 16 26 H 0.09 1.35 6.64 -2.38 -0.02 1.33 16 27 C -0.13 -3.35 7.61 71.98 0.55 -2.80 16 28 C -0.13 -1.98 5.07 30.67 0.16 -1.83 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.17 7.22 -2.39 -0.02 1.15 16 31 H 0.06 1.19 7.22 -2.39 -0.02 1.17 16 32 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.45 8.07 -2.39 -0.02 0.44 16 35 H 0.07 0.47 6.70 -2.39 -0.02 0.45 16 36 H 0.41 4.41 4.97 -92.71 -0.46 3.95 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.85 5.93 -2.39 -0.01 1.83 16 40 H 0.08 1.43 7.74 -2.39 -0.02 1.41 16 41 H 0.10 3.72 7.71 -2.40 -0.02 3.71 16 42 H 0.10 3.71 7.92 -2.39 -0.02 3.70 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 1.71 6.57 -2.39 -0.02 1.70 16 46 H 0.04 1.25 6.93 -2.39 -0.02 1.23 16 47 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 48 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -76.77 387.61 3.17 -73.59 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.50 Total: 19.57 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 5.85 Total: -7.10 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -3.96 Total: -85.08 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.09 Total: -37.58 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.17 kcal Total: -76.77 3.17 -73.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074924542.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.961 kcal (2) G-P(sol) polarization free energy of solvation -76.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds