Wall clock time and date at job start Sat Apr 11 2020 06:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32995 * 119.99874 * 2 1 4 4 C 1.50701 * 119.99959 * 359.97438 * 3 2 1 5 5 C 1.47101 * 120.00277 * 180.02562 * 3 2 1 6 6 O 1.21616 * 119.99690 * 359.97438 * 5 3 2 7 7 N 1.34772 * 120.00445 * 180.02562 * 5 3 2 8 8 C 1.46502 * 120.00448 * 179.71906 * 7 5 3 9 9 H 1.09004 * 109.45591 * 35.30185 * 8 7 5 10 10 C 1.53034 * 109.46044 * 275.34315 * 8 7 5 11 11 C 1.53190 * 109.31271 * 178.60880 * 10 8 7 12 12 N 1.46928 * 108.77363 * 54.63724 * 11 10 8 13 13 C 1.34778 * 120.63476 * 126.36515 * 12 11 10 14 14 O 1.21278 * 120.00173 * 185.09705 * 13 12 11 15 15 C 1.50705 * 119.99485 * 5.10037 * 13 12 11 16 16 S 1.81006 * 109.46840 * 179.97438 * 15 13 12 17 17 C 1.76201 * 99.99952 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99778 * 359.97438 * 17 16 15 19 19 C 1.38792 * 120.00201 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00421 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99767 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47375 * 90.00129 * 21 19 17 23 23 H 1.48501 * 109.46892 * 209.99820 * 21 19 17 24 24 H 1.48498 * 109.47273 * 329.99577 * 21 19 17 25 25 C 1.46933 * 118.73901 * 306.39363 * 12 11 10 26 26 H 1.09004 * 109.58017 * 293.82051 * 25 12 11 27 27 C 1.52999 * 109.58736 * 173.39478 * 25 12 11 28 28 C 1.53041 * 109.45997 * 155.27104 * 8 7 5 29 29 H 1.09006 * 109.46980 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47693 * 300.00168 * 1 2 3 31 31 H 1.08998 * 109.47188 * 60.00565 * 1 2 3 32 32 H 1.08002 * 120.00315 * 179.97438 * 2 1 3 33 33 H 1.09006 * 109.46835 * 270.00245 * 4 3 2 34 34 H 1.09002 * 109.46839 * 30.00026 * 4 3 2 35 35 H 1.08999 * 109.47460 * 150.00284 * 4 3 2 36 36 H 0.97001 * 119.99676 * 359.97438 * 7 5 3 37 37 H 1.09004 * 109.49806 * 298.56362 * 10 8 7 38 38 H 1.09002 * 109.49868 * 58.66059 * 10 8 7 39 39 H 1.08993 * 109.58964 * 294.85321 * 11 10 8 40 40 H 1.09001 * 109.70398 * 174.48689 * 11 10 8 41 41 H 1.09002 * 109.46859 * 299.99370 * 15 13 12 42 42 H 1.09000 * 109.47551 * 59.99865 * 15 13 12 43 43 H 0.96999 * 120.00237 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.46961 * 304.28157 * 27 25 12 45 45 H 1.09007 * 109.46870 * 64.28064 * 27 25 12 46 46 H 1.08998 * 109.46765 * 184.27798 * 27 25 12 47 47 H 1.08997 * 109.49819 * 301.34215 * 28 8 7 48 48 H 1.09002 * 109.49458 * 61.40835 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4184 2.4569 -0.0006 5 6 3.6429 1.1519 -0.0006 6 8 4.2510 0.0987 -0.0006 7 7 4.3168 2.3190 0.0000 8 6 5.7818 2.3191 0.0056 9 1 6.1472 1.4793 -0.5854 10 6 6.2861 2.1874 1.4444 11 6 7.8176 2.1529 1.4434 12 7 8.3168 3.3396 0.7353 13 6 9.2081 4.1641 1.3204 14 8 9.5425 5.1886 0.7641 15 6 9.7891 3.8128 2.6658 16 16 10.9455 5.1069 3.1800 17 6 11.4581 4.4585 4.7361 18 1 11.0561 3.5203 5.0890 19 6 12.3785 5.1534 5.5083 20 7 12.7610 4.6694 6.6710 21 14 13.0732 6.7765 4.8982 22 1 12.2115 7.8914 5.3670 23 1 14.4484 6.9571 5.4290 24 1 13.1124 6.7715 3.4138 25 6 7.8255 3.6107 -0.6227 26 1 8.1710 2.8289 -1.2991 27 6 8.3470 4.9693 -1.0951 28 6 6.2939 3.6288 -0.5984 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 2.0470 -0.9353 0.0004 33 1 1.2371 2.7712 -1.0285 34 1 0.4658 2.3266 0.5129 35 1 2.0072 3.2167 0.5132 36 1 3.8318 3.1591 0.0003 37 1 5.9418 3.0398 2.0302 38 1 5.9018 1.2658 1.8817 39 1 8.1625 1.2524 0.9354 40 1 8.1861 2.1577 2.4692 41 1 8.9860 3.7309 3.3982 42 1 10.3164 2.8614 2.5967 43 1 13.4040 5.1552 7.2109 44 1 8.0583 5.7384 -0.3787 45 1 9.4338 4.9343 -1.1724 46 1 7.9207 5.2028 -2.0707 47 1 5.9151 3.7331 -1.6151 48 1 5.9490 4.4676 0.0063 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074924543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:46 Heat of formation + Delta-G solvation = -76.361472 kcal Electronic energy + Delta-G solvation = -27321.964709 eV Core-core repulsion = 23502.610945 eV Total energy + Delta-G solvation = -3819.353764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.76039 -40.82596 -38.54318 -36.45726 -35.79840 -34.67893 -34.28950 -32.52117 -30.61106 -29.86204 -28.33545 -27.82486 -27.07305 -25.43120 -23.63903 -22.81512 -21.78652 -20.62856 -19.66871 -19.30005 -18.01981 -17.79480 -17.29795 -17.24847 -17.05326 -16.77205 -16.13974 -15.83624 -15.56588 -15.22721 -15.01202 -14.90078 -14.72123 -14.55682 -14.33505 -14.21708 -13.59970 -13.50237 -13.37697 -13.36185 -13.31974 -13.25380 -13.06185 -13.00659 -12.75769 -12.73545 -12.60593 -12.16626 -12.10815 -12.06484 -11.86672 -11.73055 -11.17552 -10.97328 -10.53414 -10.22800 -10.14593 -9.88263 -9.67689 -8.99479 -8.51908 -6.22640 0.39743 0.97694 1.30968 1.45513 1.53577 1.53829 2.02789 2.15728 2.24540 2.25977 2.67618 2.86172 3.43951 3.65953 3.71111 3.74931 3.92615 3.99476 4.01296 4.17165 4.20044 4.29705 4.30955 4.36119 4.41688 4.46665 4.51227 4.63395 4.75260 4.77161 4.82041 4.85381 4.87903 4.90985 4.96933 5.07265 5.07598 5.17883 5.24760 5.37580 5.41981 5.52571 5.66519 5.69453 5.70181 6.10690 6.25582 6.54604 6.92965 7.13164 7.21514 8.60558 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020312 B = 0.002191 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.167666 B =12777.220070 C =13515.155164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 C -0.206 4.206 4 C -0.114 4.114 5 C 0.547 3.453 6 O -0.589 6.589 7 N -0.709 5.709 8 C 0.150 3.850 9 H 0.080 0.920 10 C -0.136 4.136 11 C 0.107 3.893 12 N -0.604 5.604 13 C 0.536 3.464 14 O -0.541 6.541 15 C -0.112 4.112 16 S -0.169 6.169 17 C -0.530 4.530 18 H 0.059 0.941 19 C 0.044 3.956 20 N -0.917 5.917 21 Si 0.916 3.084 22 H -0.261 1.261 23 H -0.260 1.260 24 H -0.236 1.236 25 C 0.147 3.853 26 H 0.087 0.913 27 C -0.128 4.128 28 C -0.125 4.125 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.414 0.586 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.277 0.723 44 H 0.052 0.948 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.033 -5.783 -18.208 33.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 C -0.209 4.209 4 C -0.171 4.171 5 C 0.338 3.662 6 O -0.471 6.471 7 N -0.361 5.361 8 C 0.045 3.955 9 H 0.098 0.902 10 C -0.176 4.176 11 C -0.016 4.016 12 N -0.339 5.339 13 C 0.324 3.676 14 O -0.419 6.419 15 C -0.263 4.263 16 S 0.058 5.942 17 C -0.678 4.678 18 H 0.078 0.922 19 C -0.161 4.161 20 N -0.555 5.555 21 Si 0.738 3.262 22 H -0.186 1.186 23 H -0.184 1.184 24 H -0.160 1.160 25 C 0.044 3.956 26 H 0.105 0.895 27 C -0.185 4.185 28 C -0.163 4.163 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.252 0.748 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.123 0.877 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.008 -4.981 -18.881 32.523 hybrid contribution 0.326 -0.673 1.336 1.531 sum -25.682 -5.653 -17.544 31.612 Atomic orbital electron populations 1.21041 0.89658 1.04008 1.03689 1.23778 0.98034 0.97087 0.90450 1.21542 0.91224 0.98511 1.09658 1.20870 1.00393 0.92284 1.03547 1.18929 0.88991 0.83332 0.74992 1.90771 1.71176 1.32792 1.52375 1.45910 1.06734 1.08967 1.74444 1.20849 0.79717 0.98947 0.95961 0.90193 1.22224 0.94682 1.03084 0.97582 1.21859 0.93953 0.87355 0.98457 1.48136 1.42926 1.26123 1.16746 1.19887 0.78776 0.83113 0.85861 1.90757 1.61103 1.25950 1.64059 1.23375 1.01917 1.02991 0.97999 1.84594 1.54100 1.32490 1.23008 1.22467 1.30472 1.10754 1.04084 0.92231 1.25590 0.95250 1.01144 0.94126 1.70019 1.32596 1.40731 1.12176 0.85841 0.79148 0.79704 0.81505 1.18613 1.18400 1.15972 1.21371 0.93479 0.98945 0.81813 0.89473 1.22042 1.00940 0.95214 1.00350 1.22205 0.94190 0.96549 1.03397 0.90770 0.89406 0.89352 0.87676 0.89724 0.89553 0.91146 0.74828 0.91026 0.90689 0.89614 0.89125 0.87566 0.87659 0.91379 0.92928 0.93336 0.91240 0.87720 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 8.91 71.23 0.63 -0.11 16 2 C -0.07 -0.94 9.84 24.52 0.24 -0.70 16 3 C -0.21 -2.76 6.00 -18.70 -0.11 -2.87 16 4 C -0.11 -0.70 9.14 71.24 0.65 -0.05 16 5 C 0.55 10.56 7.71 86.57 0.67 11.22 16 6 O -0.59 -16.39 15.89 -4.08 -0.06 -16.46 16 7 N -0.71 -10.18 5.02 -446.01 -2.24 -12.42 16 8 C 0.15 2.47 2.41 45.02 0.11 2.58 16 9 H 0.08 1.56 7.58 -2.39 -0.02 1.54 16 10 C -0.14 -2.55 5.65 30.67 0.17 -2.37 16 11 C 0.11 2.23 6.33 86.36 0.55 2.77 16 12 N -0.60 -15.18 2.97 -795.02 -2.36 -17.54 16 13 C 0.54 18.40 7.62 87.66 0.67 19.07 16 14 O -0.54 -21.67 11.26 -3.02 -0.03 -21.70 16 15 C -0.11 -4.31 4.56 71.24 0.32 -3.98 16 16 S -0.17 -8.51 18.55 -56.49 -1.05 -9.55 16 17 C -0.53 -31.08 10.04 67.95 0.68 -30.40 16 18 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 19 C 0.04 2.61 5.50 84.86 0.47 3.08 16 20 N -0.92 -56.18 13.97 21.65 0.30 -55.88 16 21 Si 0.92 45.08 27.74 68.60 1.90 46.98 16 22 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 25 C 0.15 2.97 3.49 44.97 0.16 3.13 16 26 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 27 C -0.13 -3.08 7.59 71.98 0.55 -2.53 16 28 C -0.12 -1.81 4.84 30.67 0.15 -1.66 16 29 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.09 0.35 7.40 -2.39 -0.02 0.33 16 31 H 0.09 0.31 8.10 -2.39 -0.02 0.29 16 32 H 0.11 1.77 7.49 -2.91 -0.02 1.75 16 33 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 34 H 0.09 0.33 6.49 -2.39 -0.02 0.32 16 35 H 0.07 0.34 6.70 -2.39 -0.02 0.33 16 36 H 0.41 3.71 6.70 -92.71 -0.62 3.09 16 37 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 1.98 5.96 -2.39 -0.01 1.97 16 41 H 0.11 3.83 7.48 -2.39 -0.02 3.81 16 42 H 0.11 3.85 8.11 -2.40 -0.02 3.83 16 43 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.05 1.51 6.73 -2.39 -0.02 1.50 16 45 H 0.05 1.45 6.76 -2.38 -0.02 1.43 16 46 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 48 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -77.24 391.11 2.66 -74.57 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.30 Total: 14.83 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 5.90 Total: -2.83 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -4.30 Total: -85.84 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.10 Total: -38.16 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.05 Total: -9.55 kcal Total: -77.24 2.66 -74.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074924543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.786 kcal (2) G-P(sol) polarization free energy of solvation -77.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds