Wall clock time and date at job start Sat Apr 11 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32985 * 120.00323 * 2 1 4 4 C 1.50703 * 120.00321 * 179.97438 * 3 2 1 5 5 C 1.47106 * 120.00150 * 0.02562 * 3 2 1 6 6 O 1.21610 * 119.99654 * 359.97438 * 5 3 2 7 7 N 1.34773 * 120.00103 * 179.97438 * 5 3 2 8 8 C 1.46503 * 119.99909 * 179.97438 * 7 5 3 9 9 H 1.09003 * 109.44378 * 35.03909 * 8 7 5 10 10 C 1.53032 * 109.46163 * 275.07195 * 8 7 5 11 11 C 1.53626 * 109.24267 * 178.49018 * 10 8 7 12 12 N 1.46923 * 108.54439 * 54.85344 * 11 10 8 13 13 C 1.34774 * 120.63112 * 126.36462 * 12 11 10 14 14 O 1.21282 * 120.00114 * 173.92901 * 13 12 11 15 15 C 1.50708 * 119.99925 * 353.93828 * 13 12 11 16 16 S 1.81002 * 109.46837 * 179.97438 * 15 13 12 17 17 C 1.76201 * 99.99678 * 180.02562 * 16 15 13 18 18 H 1.08006 * 120.00228 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00305 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99673 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00481 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47498 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.46845 * 299.99564 * 21 19 17 24 24 H 1.48500 * 109.47357 * 59.99481 * 21 19 17 25 25 C 1.46932 * 118.73826 * 306.10074 * 12 11 10 26 26 H 1.08997 * 109.58260 * 294.06509 * 25 12 11 27 27 C 1.52997 * 109.58333 * 173.64493 * 25 12 11 28 28 C 1.53043 * 109.45829 * 155.00249 * 8 7 5 29 29 H 1.08994 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47008 * 299.99884 * 1 2 3 31 31 H 1.09009 * 109.47056 * 59.99397 * 1 2 3 32 32 H 1.08004 * 119.99485 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47507 * 270.00618 * 4 3 2 34 34 H 1.09002 * 109.46374 * 30.00931 * 4 3 2 35 35 H 1.09001 * 109.47141 * 149.99832 * 4 3 2 36 36 H 0.96993 * 119.99994 * 0.02562 * 7 5 3 37 37 H 1.09000 * 109.50214 * 298.56662 * 10 8 7 38 38 H 1.09007 * 109.50059 * 58.63388 * 10 8 7 39 39 H 1.09004 * 109.74080 * 295.12130 * 11 10 8 40 40 H 1.09001 * 109.66598 * 174.55024 * 11 10 8 41 41 H 1.09001 * 109.46768 * 59.99516 * 15 13 12 42 42 H 1.08994 * 109.47214 * 299.99514 * 15 13 12 43 43 H 0.97000 * 120.00374 * 0.02562 * 20 19 17 44 44 H 1.09003 * 109.47771 * 65.79730 * 27 25 12 45 45 H 1.09004 * 109.47159 * 185.79257 * 27 25 12 46 46 H 1.09000 * 109.47544 * 305.79232 * 27 25 12 47 47 H 1.08997 * 109.49569 * 61.43484 * 28 8 7 48 48 H 1.09004 * 109.52529 * 301.35353 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 3.6790 1.1516 0.0006 5 6 1.4366 2.4257 0.0006 6 8 0.2205 2.4257 0.0006 7 7 2.1105 3.5928 0.0011 8 6 1.3780 4.8616 0.0011 9 1 0.4676 4.7550 0.5909 10 6 1.0132 5.2397 -1.4362 11 6 0.2129 6.5510 -1.4272 12 7 0.9949 7.5709 -0.7153 13 6 1.2632 8.7582 -1.2938 14 8 1.8133 9.6322 -0.6578 15 6 0.8793 9.0000 -2.7309 16 16 1.3682 10.6750 -3.2123 17 6 0.8156 10.6860 -4.8854 18 1 0.3384 9.8113 -5.3023 19 6 0.9945 11.8182 -5.6680 20 7 1.5765 12.8840 -5.1601 21 14 0.4081 11.8301 -7.4415 22 1 0.7143 13.1472 -8.0553 23 1 1.1012 10.7573 -8.1991 24 1 -1.0577 11.5955 -7.4798 25 6 1.4741 7.2740 0.6417 26 1 0.6236 7.1791 1.3168 27 6 2.3893 8.4026 1.1207 28 6 2.2556 5.9569 0.6115 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 2.0469 -0.9354 -0.0004 33 1 4.0420 1.1518 1.0284 34 1 4.0424 0.2616 -0.5131 35 1 4.0426 2.0415 -0.5133 36 1 3.0804 3.5928 0.0007 37 1 1.9241 5.3706 -2.0204 38 1 0.4081 4.4481 -1.8783 39 1 -0.7384 6.3982 -0.9172 40 1 0.0325 6.8777 -2.4513 41 1 -0.1994 8.8905 -2.8422 42 1 1.3857 8.2759 -3.3690 43 1 1.8807 12.8780 -4.2390 44 1 1.8099 9.3197 1.2280 45 1 2.8249 8.1335 2.0830 46 1 3.1852 8.5589 0.3925 47 1 3.1548 6.0810 0.0081 48 1 2.5348 5.6762 1.6271 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074924544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:50 Heat of formation + Delta-G solvation = -56.604050 kcal Electronic energy + Delta-G solvation = -27532.679802 eV Core-core repulsion = 23714.182784 eV Total energy + Delta-G solvation = -3818.497018 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77423 -39.94164 -37.52044 -35.37490 -34.88302 -33.25223 -32.53371 -31.72425 -30.09837 -29.02666 -27.34082 -25.47474 -24.85409 -24.56115 -22.94605 -22.09865 -20.99347 -19.80998 -18.93406 -18.13590 -16.72542 -16.65069 -16.25006 -16.15225 -15.55048 -15.35556 -14.74578 -14.54780 -14.24638 -14.16982 -14.02110 -13.84315 -13.67064 -13.36367 -13.24252 -13.00303 -12.97076 -12.57946 -12.39766 -12.35278 -12.31767 -12.11057 -11.88950 -11.88377 -11.84399 -11.70902 -11.24087 -11.14832 -10.92512 -10.88603 -10.17926 -9.87352 -9.59259 -9.55292 -9.20694 -9.01983 -8.83122 -8.55438 -8.22383 -6.67593 -6.62656 -4.00444 1.02101 2.77917 2.82363 2.93907 2.99494 3.31841 3.37387 3.43162 3.57424 4.23386 4.27228 4.39325 4.43098 4.52745 4.68520 4.79760 4.83099 4.87711 4.96848 5.05107 5.11115 5.16757 5.21858 5.22620 5.27872 5.38384 5.42862 5.46687 5.49447 5.52890 5.57188 5.69817 5.70494 5.74453 5.75362 5.82103 5.93125 5.99911 6.05666 6.17457 6.20269 6.22913 6.42417 6.75484 7.21241 7.49232 7.91186 7.93856 8.48555 8.49657 9.26467 10.81232 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.002329 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.695058 B =12018.433762 C =13097.253651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.067 4.067 3 C -0.201 4.201 4 C -0.115 4.115 5 C 0.551 3.449 6 O -0.536 6.536 7 N -0.724 5.724 8 C 0.147 3.853 9 H 0.090 0.910 10 C -0.144 4.144 11 C 0.111 3.889 12 N -0.618 5.618 13 C 0.535 3.465 14 O -0.509 6.509 15 C -0.131 4.131 16 S -0.116 6.116 17 C -0.607 4.607 18 H 0.065 0.935 19 C 0.035 3.965 20 N -0.884 5.884 21 Si 1.083 2.917 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.152 3.848 26 H 0.071 0.929 27 C -0.139 4.139 28 C -0.138 4.138 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.399 0.601 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.278 0.722 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 -26.270 12.884 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.087 4.087 3 C -0.204 4.204 4 C -0.171 4.171 5 C 0.340 3.660 6 O -0.415 6.415 7 N -0.375 5.375 8 C 0.043 3.957 9 H 0.108 0.892 10 C -0.183 4.183 11 C -0.013 4.013 12 N -0.355 5.355 13 C 0.323 3.677 14 O -0.383 6.383 15 C -0.282 4.282 16 S 0.110 5.890 17 C -0.755 4.755 18 H 0.083 0.917 19 C -0.175 4.175 20 N -0.518 5.518 21 Si 0.909 3.091 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.211 1.211 25 C 0.048 3.952 26 H 0.089 0.911 27 C -0.196 4.196 28 C -0.177 4.177 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.235 0.765 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.837 -23.991 12.487 27.108 hybrid contribution -0.087 -2.307 0.381 2.340 sum 1.750 -26.297 12.869 29.330 Atomic orbital electron populations 1.21042 0.91642 1.01038 1.04221 1.23655 0.97332 0.96663 0.91025 1.21471 0.96395 0.93200 1.09305 1.20767 0.90917 1.03004 1.02457 1.18419 0.87301 0.84079 0.76191 1.90792 1.13498 1.87539 1.49663 1.46069 1.10340 1.05508 1.75623 1.20950 0.95958 0.82108 0.96718 0.89161 1.22393 1.01423 0.97574 0.96936 1.21779 0.93913 0.87055 0.98513 1.48183 1.55523 1.15597 1.16154 1.20253 0.77988 0.81058 0.88404 1.90735 1.41088 1.43204 1.63300 1.23403 1.04529 1.05278 0.94948 1.84776 1.79508 1.09779 1.14943 1.23692 1.49257 1.05870 0.96660 0.91686 1.26045 0.94524 0.91162 1.05794 1.70800 1.34498 1.29159 1.17345 0.83338 0.76134 0.76431 0.73164 1.20274 1.21155 1.21126 1.21113 0.96636 0.94236 0.83196 0.91118 1.22212 1.00073 0.97895 0.99414 1.22326 0.99229 0.94304 1.01868 0.92998 0.90087 0.89988 0.85866 0.91089 0.91122 0.91728 0.76537 0.91069 0.90188 0.91029 0.88869 0.89149 0.89163 0.91002 0.89762 0.94011 0.91392 0.90733 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 8.45 36.01 0.30 -0.67 16 2 C -0.07 -0.46 9.95 -36.13 -0.36 -0.82 16 3 C -0.20 -1.48 6.00 -102.85 -0.62 -2.10 16 4 C -0.11 -0.54 9.61 36.01 0.35 -0.19 16 5 C 0.55 5.37 7.68 -12.66 -0.10 5.27 16 6 O -0.54 -6.78 12.73 5.27 0.07 -6.71 16 7 N -0.72 -5.89 5.02 -54.95 -0.28 -6.16 16 8 C 0.15 1.36 2.41 -67.89 -0.16 1.19 16 9 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 10 C -0.14 -1.45 5.67 -26.39 -0.15 -1.60 16 11 C 0.11 1.26 6.38 -3.49 -0.02 1.24 16 12 N -0.62 -8.49 2.97 -164.95 -0.49 -8.97 16 13 C 0.53 9.78 7.52 -10.98 -0.08 9.70 16 14 O -0.51 -10.75 11.43 5.56 0.06 -10.69 16 15 C -0.13 -2.63 4.51 36.01 0.16 -2.47 16 16 S -0.12 -3.11 19.60 -107.50 -2.11 -5.22 16 17 C -0.61 -17.46 9.50 30.94 0.29 -17.16 16 18 H 0.06 1.79 7.80 -52.48 -0.41 1.38 16 19 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 20 N -0.88 -27.48 13.67 55.49 0.76 -26.72 16 21 Si 1.08 24.95 29.92 -169.99 -5.09 19.87 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.15 1.77 3.49 -67.60 -0.24 1.53 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 C -0.14 -1.85 7.61 37.16 0.28 -1.57 16 28 C -0.14 -1.24 4.84 -26.61 -0.13 -1.37 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.76 7.22 -51.93 -0.37 0.38 16 31 H 0.08 0.78 7.22 -51.92 -0.37 0.41 16 32 H 0.12 0.54 8.06 -52.48 -0.42 0.11 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 35 H 0.06 0.27 6.71 -51.93 -0.35 -0.08 16 36 H 0.40 2.42 6.70 -40.82 -0.27 2.14 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 41 H 0.09 1.72 7.69 -51.92 -0.40 1.32 16 42 H 0.09 1.72 7.94 -51.92 -0.41 1.31 16 43 H 0.28 8.80 7.12 -40.82 -0.29 8.51 16 44 H 0.08 1.34 6.54 -51.93 -0.34 1.00 16 45 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.07 1.05 6.96 -51.93 -0.36 0.69 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -34.95 390.58 -9.47 -44.42 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.73 Total: 2.38 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -0.56 Total: -8.08 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: -0.01 Total: -41.86 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.13 Total: -17.40 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.09 Total: 19.87 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.11 Total: -5.22 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.95 -9.47 -44.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074924544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.185 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds