Wall clock time and date at job start Sat Apr 11 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32985 * 120.00323 * 2 1 4 4 C 1.50703 * 120.00321 * 179.97438 * 3 2 1 5 5 C 1.47106 * 120.00150 * 0.02562 * 3 2 1 6 6 O 1.21610 * 119.99654 * 359.97438 * 5 3 2 7 7 N 1.34773 * 120.00103 * 179.97438 * 5 3 2 8 8 C 1.46503 * 119.99909 * 179.97438 * 7 5 3 9 9 H 1.09003 * 109.44378 * 35.03909 * 8 7 5 10 10 C 1.53032 * 109.46163 * 275.07195 * 8 7 5 11 11 C 1.53626 * 109.24267 * 178.49018 * 10 8 7 12 12 N 1.46923 * 108.54439 * 54.85344 * 11 10 8 13 13 C 1.34774 * 120.63112 * 126.36462 * 12 11 10 14 14 O 1.21282 * 120.00114 * 173.92901 * 13 12 11 15 15 C 1.50708 * 119.99925 * 353.93828 * 13 12 11 16 16 S 1.81002 * 109.46837 * 179.97438 * 15 13 12 17 17 C 1.76201 * 99.99678 * 180.02562 * 16 15 13 18 18 H 1.08006 * 120.00228 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00305 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99673 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00481 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47498 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.46845 * 299.99564 * 21 19 17 24 24 H 1.48500 * 109.47357 * 59.99481 * 21 19 17 25 25 C 1.46932 * 118.73826 * 306.10074 * 12 11 10 26 26 H 1.08997 * 109.58260 * 294.06509 * 25 12 11 27 27 C 1.52997 * 109.58333 * 173.64493 * 25 12 11 28 28 C 1.53043 * 109.45829 * 155.00249 * 8 7 5 29 29 H 1.08994 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47008 * 299.99884 * 1 2 3 31 31 H 1.09009 * 109.47056 * 59.99397 * 1 2 3 32 32 H 1.08004 * 119.99485 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47507 * 270.00618 * 4 3 2 34 34 H 1.09002 * 109.46374 * 30.00931 * 4 3 2 35 35 H 1.09001 * 109.47141 * 149.99832 * 4 3 2 36 36 H 0.96993 * 119.99994 * 0.02562 * 7 5 3 37 37 H 1.09000 * 109.50214 * 298.56662 * 10 8 7 38 38 H 1.09007 * 109.50059 * 58.63388 * 10 8 7 39 39 H 1.09004 * 109.74080 * 295.12130 * 11 10 8 40 40 H 1.09001 * 109.66598 * 174.55024 * 11 10 8 41 41 H 1.09001 * 109.46768 * 59.99516 * 15 13 12 42 42 H 1.08994 * 109.47214 * 299.99514 * 15 13 12 43 43 H 0.97000 * 120.00374 * 0.02562 * 20 19 17 44 44 H 1.09003 * 109.47771 * 65.79730 * 27 25 12 45 45 H 1.09004 * 109.47159 * 185.79257 * 27 25 12 46 46 H 1.09000 * 109.47544 * 305.79232 * 27 25 12 47 47 H 1.08997 * 109.49569 * 61.43484 * 28 8 7 48 48 H 1.09004 * 109.52529 * 301.35353 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 3.6790 1.1516 0.0006 5 6 1.4366 2.4257 0.0006 6 8 0.2205 2.4257 0.0006 7 7 2.1105 3.5928 0.0011 8 6 1.3780 4.8616 0.0011 9 1 0.4676 4.7550 0.5909 10 6 1.0132 5.2397 -1.4362 11 6 0.2129 6.5510 -1.4272 12 7 0.9949 7.5709 -0.7153 13 6 1.2632 8.7582 -1.2938 14 8 1.8133 9.6322 -0.6578 15 6 0.8793 9.0000 -2.7309 16 16 1.3682 10.6750 -3.2123 17 6 0.8156 10.6860 -4.8854 18 1 0.3384 9.8113 -5.3023 19 6 0.9945 11.8182 -5.6680 20 7 1.5765 12.8840 -5.1601 21 14 0.4081 11.8301 -7.4415 22 1 0.7143 13.1472 -8.0553 23 1 1.1012 10.7573 -8.1991 24 1 -1.0577 11.5955 -7.4798 25 6 1.4741 7.2740 0.6417 26 1 0.6236 7.1791 1.3168 27 6 2.3893 8.4026 1.1207 28 6 2.2556 5.9569 0.6115 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 2.0469 -0.9354 -0.0004 33 1 4.0420 1.1518 1.0284 34 1 4.0424 0.2616 -0.5131 35 1 4.0426 2.0415 -0.5133 36 1 3.0804 3.5928 0.0007 37 1 1.9241 5.3706 -2.0204 38 1 0.4081 4.4481 -1.8783 39 1 -0.7384 6.3982 -0.9172 40 1 0.0325 6.8777 -2.4513 41 1 -0.1994 8.8905 -2.8422 42 1 1.3857 8.2759 -3.3690 43 1 1.8807 12.8780 -4.2390 44 1 1.8099 9.3197 1.2280 45 1 2.8249 8.1335 2.0830 46 1 3.1852 8.5589 0.3925 47 1 3.1548 6.0810 0.0081 48 1 2.5348 5.6762 1.6271 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074924544.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:49 Heat of formation + Delta-G solvation = -79.011203 kcal Electronic energy + Delta-G solvation = -27533.651449 eV Core-core repulsion = 23714.182784 eV Total energy + Delta-G solvation = -3819.468665 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78606 -40.89388 -38.61024 -36.06245 -35.74134 -34.75773 -34.32141 -32.60133 -30.86403 -30.28820 -28.38037 -27.06815 -26.07135 -25.39322 -23.77333 -23.10901 -21.82566 -20.86742 -20.31467 -19.71886 -17.94081 -17.47019 -17.39832 -17.00820 -16.84313 -16.29727 -16.10304 -15.71831 -15.38120 -15.16406 -15.03812 -14.87165 -14.77525 -14.68663 -14.38811 -13.91701 -13.82794 -13.67242 -13.62669 -13.48251 -13.46181 -13.19464 -12.98183 -12.83136 -12.76594 -12.73550 -12.34213 -12.15551 -12.06939 -11.96265 -11.75888 -11.54011 -11.10445 -10.62081 -10.33259 -10.24229 -10.21732 -9.81972 -9.71459 -8.93001 -8.86898 -6.27829 0.44653 1.17183 1.48743 1.50845 1.59522 1.79763 1.97395 2.18785 2.26850 2.33186 3.01516 3.07985 3.43855 3.65568 3.69900 3.75819 3.89917 3.96114 3.97174 4.11648 4.15785 4.27729 4.31170 4.33805 4.38402 4.45543 4.53077 4.62002 4.73766 4.79102 4.79542 4.83404 4.84110 4.89715 4.93185 5.03365 5.05076 5.21335 5.25689 5.32677 5.45482 5.55791 5.63017 5.64710 5.65509 6.14451 6.22038 6.57722 7.05339 7.09924 7.25558 8.50434 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.002329 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.695058 B =12018.433762 C =13097.253651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.066 4.066 3 C -0.210 4.210 4 C -0.112 4.112 5 C 0.543 3.457 6 O -0.572 6.572 7 N -0.714 5.714 8 C 0.153 3.847 9 H 0.082 0.918 10 C -0.135 4.135 11 C 0.107 3.893 12 N -0.604 5.604 13 C 0.534 3.466 14 O -0.545 6.545 15 C -0.108 4.108 16 S -0.190 6.190 17 C -0.614 4.614 18 H 0.072 0.928 19 C -0.019 4.019 20 N -0.912 5.912 21 Si 1.135 2.865 22 H -0.279 1.279 23 H -0.263 1.263 24 H -0.264 1.264 25 C 0.147 3.853 26 H 0.088 0.912 27 C -0.131 4.131 28 C -0.125 4.125 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.153 0.847 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.411 0.589 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.261 0.739 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.041 0.959 47 H 0.074 0.926 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 -29.451 12.899 32.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.086 4.086 3 C -0.213 4.213 4 C -0.168 4.168 5 C 0.333 3.667 6 O -0.453 6.453 7 N -0.365 5.365 8 C 0.048 3.952 9 H 0.100 0.900 10 C -0.174 4.174 11 C -0.016 4.016 12 N -0.339 5.339 13 C 0.321 3.679 14 O -0.423 6.423 15 C -0.260 4.260 16 S 0.037 5.963 17 C -0.761 4.761 18 H 0.091 0.909 19 C -0.222 4.222 20 N -0.547 5.547 21 Si 0.953 3.047 22 H -0.205 1.205 23 H -0.188 1.188 24 H -0.189 1.189 25 C 0.045 3.955 26 H 0.105 0.895 27 C -0.188 4.188 28 C -0.164 4.164 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.171 0.829 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.249 0.751 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.055 -27.231 12.538 30.049 hybrid contribution -0.188 -1.440 0.495 1.534 sum 1.867 -28.671 13.033 31.550 Atomic orbital electron populations 1.20967 0.92883 1.01598 1.02345 1.23912 0.96647 0.97845 0.90166 1.21639 0.97842 0.92082 1.09719 1.20804 0.88735 1.03899 1.03384 1.18911 0.87085 0.85139 0.75537 1.90782 1.15092 1.88077 1.51354 1.45948 1.10922 1.04743 1.74936 1.20797 0.95874 0.82681 0.95876 0.90018 1.22295 1.01009 0.96530 0.97611 1.21978 0.94469 0.86835 0.98323 1.48159 1.54517 1.14345 1.16920 1.19954 0.78160 0.82198 0.87565 1.90751 1.42994 1.44789 1.63721 1.23303 1.05275 1.00575 0.96814 1.84966 1.80333 1.15868 1.15116 1.24022 1.48708 1.06177 0.97239 0.90929 1.27806 0.93711 0.90587 1.10085 1.70919 1.36674 1.30518 1.16638 0.82735 0.77007 0.76985 0.68004 1.20455 1.18803 1.18886 1.21338 0.97317 0.94938 0.81936 0.89452 1.22027 0.99183 0.97297 1.00291 1.22202 0.98440 0.92339 1.03383 0.91124 0.91945 0.92079 0.82904 0.90065 0.89858 0.91260 0.75093 0.91255 0.90404 0.89441 0.89171 0.87816 0.87817 0.92844 0.92870 0.90936 0.93992 0.90762 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.45 71.24 0.60 -1.22 16 2 C -0.07 -0.76 9.95 24.52 0.24 -0.51 16 3 C -0.21 -2.64 6.00 -18.70 -0.11 -2.75 16 4 C -0.11 -0.70 9.61 71.24 0.68 -0.01 16 5 C 0.54 9.74 7.68 86.57 0.67 10.41 16 6 O -0.57 -14.14 12.73 -4.06 -0.05 -14.19 16 7 N -0.71 -9.99 5.02 -446.01 -2.24 -12.23 16 8 C 0.15 2.48 2.41 45.02 0.11 2.59 16 9 H 0.08 1.55 7.58 -2.39 -0.02 1.53 16 10 C -0.14 -2.47 5.67 30.82 0.17 -2.30 16 11 C 0.11 2.24 6.38 86.51 0.55 2.79 16 12 N -0.60 -15.92 2.97 -794.18 -2.36 -18.28 16 13 C 0.53 19.58 7.52 87.66 0.66 20.24 16 14 O -0.54 -23.77 11.43 -3.04 -0.03 -23.80 16 15 C -0.11 -4.36 4.51 71.24 0.32 -4.04 16 16 S -0.19 -10.45 19.60 -56.49 -1.11 -11.56 16 17 C -0.61 -35.59 9.50 67.95 0.65 -34.95 16 18 H 0.07 3.96 7.80 -2.91 -0.02 3.94 16 19 C -0.02 -1.09 5.49 84.86 0.47 -0.62 16 20 N -0.91 -58.11 13.67 21.65 0.30 -57.81 16 21 Si 1.13 49.54 29.92 68.60 2.05 51.59 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 24 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 25 C 0.15 3.17 3.49 44.97 0.16 3.33 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 C -0.13 -3.41 7.61 71.98 0.55 -2.86 16 28 C -0.13 -1.90 4.84 30.67 0.15 -1.76 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 1.16 7.22 -2.39 -0.02 1.15 16 31 H 0.06 1.17 7.22 -2.38 -0.02 1.15 16 32 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 33 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.08 0.34 8.07 -2.39 -0.02 0.32 16 35 H 0.07 0.36 6.71 -2.39 -0.02 0.35 16 36 H 0.41 3.80 6.70 -92.71 -0.62 3.18 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.09 1.96 5.93 -2.39 -0.01 1.94 16 41 H 0.10 3.88 7.69 -2.40 -0.02 3.86 16 42 H 0.10 3.88 7.94 -2.40 -0.02 3.86 16 43 H 0.26 17.24 7.12 -92.71 -0.66 16.58 16 44 H 0.05 1.73 6.54 -2.39 -0.02 1.71 16 45 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.04 1.31 6.96 -2.39 -0.02 1.29 16 47 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -79.45 390.58 2.87 -76.58 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.45 Total: 21.37 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 5.86 Total: -11.67 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -4.30 Total: -88.32 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.09 Total: -37.99 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.05 Total: 51.59 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -1.11 Total: -11.56 kcal Total: -79.45 2.87 -76.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074924544.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.428 kcal (2) G-P(sol) polarization free energy of solvation -79.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds