Wall clock time and date at job start Sat Apr 11 2020 06:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 H 1.09008 * 115.55064 * 29.27680 * 3 2 1 5 5 C 1.53000 * 117.49920 * 243.60899 * 3 2 1 6 6 C 1.53002 * 60.02940 * 252.47484 * 5 3 2 7 7 H 1.09000 * 117.49996 * 107.50493 * 6 5 3 8 8 C 1.50706 * 117.49668 * 252.51929 * 6 5 3 9 9 O 1.21277 * 120.00023 * 68.61167 * 8 6 5 10 10 N 1.34780 * 119.99945 * 248.60941 * 8 6 5 11 11 C 1.47067 * 136.05749 * 359.63255 * 10 8 6 12 12 C 1.53759 * 87.88413 * 152.96209 * 11 10 8 13 13 N 1.46497 * 114.57357 * 272.65997 * 12 11 10 14 14 C 1.46509 * 120.00043 * 213.67469 * 13 12 11 15 15 C 1.53005 * 109.46745 * 90.00375 * 14 13 12 16 16 C 1.34780 * 120.00184 * 33.67819 * 13 12 11 17 17 O 1.21287 * 119.99540 * 359.97438 * 16 13 12 18 18 C 1.50697 * 119.99964 * 180.02562 * 16 13 12 19 19 S 1.81006 * 109.46950 * 179.97438 * 18 16 13 20 20 C 1.76195 * 99.99993 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00250 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00169 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99842 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00198 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46826 * 60.00725 * 24 22 20 26 26 H 1.48500 * 109.47001 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47275 * 300.00057 * 24 22 20 28 28 C 1.47063 * 136.05594 * 179.97438 * 10 8 6 29 29 H 1.08999 * 109.47468 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47208 * 300.00339 * 1 2 3 31 31 H 1.09003 * 109.47059 * 60.00042 * 1 2 3 32 32 H 1.08995 * 109.46784 * 239.99741 * 2 1 3 33 33 H 1.08999 * 109.46571 * 120.00049 * 2 1 3 34 34 H 1.09002 * 117.49833 * 359.97438 * 5 3 2 35 35 H 1.09002 * 117.49953 * 144.97630 * 5 3 2 36 36 H 1.08994 * 113.46436 * 267.69541 * 11 10 8 37 37 H 1.09003 * 113.46562 * 38.13407 * 11 10 8 38 38 H 1.09003 * 114.08132 * 139.77886 * 12 11 10 39 39 H 1.08991 * 109.46844 * 209.99798 * 14 13 12 40 40 H 1.08996 * 109.46909 * 330.00433 * 14 13 12 41 41 H 1.09000 * 109.46805 * 299.99437 * 15 14 13 42 42 H 1.08992 * 109.47429 * 59.99816 * 15 14 13 43 43 H 1.08996 * 109.46738 * 180.02562 * 15 14 13 44 44 H 1.09004 * 109.46636 * 299.99325 * 18 16 13 45 45 H 1.08996 * 109.47887 * 59.99783 * 18 16 13 46 46 H 0.96998 * 119.99805 * 179.97438 * 23 22 20 47 47 H 1.09004 * 113.46956 * 321.87114 * 28 10 8 48 48 H 1.09000 * 113.46782 * 92.30584 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3880 2.1717 0.4809 5 6 2.8443 1.9074 -1.2157 6 6 3.5507 1.6588 0.1185 7 1 4.1816 0.7733 0.1966 8 6 4.0226 2.8636 0.8911 9 8 3.2150 3.6180 1.3907 10 7 5.3420 3.1027 1.0269 11 6 6.5866 2.4495 0.5943 12 6 7.2601 3.8310 0.6386 13 7 7.1386 4.6079 -0.5975 14 6 8.2247 5.4995 -1.0121 15 6 9.2080 4.7289 -1.8953 16 6 6.0277 4.5025 -1.3533 17 8 5.1287 3.7640 -1.0103 18 6 5.9030 5.3012 -2.6251 19 16 4.3107 4.9440 -3.4082 20 6 4.4286 5.9807 -4.8280 21 1 5.3114 6.5826 -4.9854 22 6 3.3873 6.0231 -5.7448 23 7 2.3115 5.2892 -5.5533 24 14 3.5126 7.1217 -7.2504 25 1 4.6887 6.7170 -8.0619 26 1 2.2785 6.9872 -8.0653 27 1 3.6700 8.5343 -6.8207 28 6 6.1708 4.1284 1.6779 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 3.0104 1.1855 -2.0153 35 1 2.7211 2.9424 -1.5348 36 1 6.9860 1.7482 1.3269 37 1 6.5284 2.0252 -0.4081 38 1 8.2724 3.8196 1.0426 39 1 7.8123 6.3378 -1.5734 40 1 8.7445 5.8733 -0.1300 41 1 9.6205 3.8905 -1.3340 42 1 8.6882 4.3550 -2.7773 43 1 10.0163 5.3921 -2.2034 44 1 5.9640 6.3646 -2.3937 45 1 6.7107 5.0303 -3.3051 46 1 1.5837 5.3191 -6.1938 47 1 5.7584 5.1343 1.5988 48 1 6.4605 3.8701 2.6965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079344749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:53 Heat of formation + Delta-G solvation = 16.955296 kcal Electronic energy + Delta-G solvation = -28804.496418 eV Core-core repulsion = 24989.189172 eV Total energy + Delta-G solvation = -3815.307245 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02555 -38.91213 -37.46744 -36.13522 -35.46511 -32.42234 -31.81906 -30.58438 -29.57077 -28.24973 -26.10091 -25.48833 -24.12452 -23.30959 -23.24910 -21.82229 -20.06574 -18.95085 -18.28932 -17.60318 -17.10193 -16.59385 -16.22101 -15.59486 -15.13471 -14.81353 -14.76556 -14.38704 -14.27681 -13.98724 -13.86535 -13.44131 -13.37396 -12.98682 -12.91514 -12.63308 -12.50293 -12.22415 -12.13812 -11.98929 -11.80749 -11.69533 -11.66098 -11.17579 -11.06743 -11.03438 -11.03264 -10.94823 -10.76456 -10.69590 -9.81286 -9.75781 -9.62621 -9.30813 -9.16590 -9.05256 -8.59826 -8.21853 -7.99970 -6.47632 -6.21147 -3.90726 2.83546 3.01343 3.12953 3.20635 3.22901 3.24452 3.28474 3.57237 4.21044 4.30190 4.32330 4.57500 4.83595 4.87863 4.98779 5.13195 5.14242 5.16790 5.18655 5.26010 5.31629 5.31815 5.36612 5.47925 5.52545 5.56577 5.58060 5.63959 5.69115 5.74197 5.74980 5.79947 5.92865 5.96995 6.03395 6.04039 6.10223 6.20645 6.26003 6.34471 6.43590 6.68346 6.70940 6.90293 7.53245 7.59567 8.18143 8.35045 8.64071 8.78458 9.24381 10.85988 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008039 B = 0.004813 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3482.084886 B = 5816.164190 C = 8750.506749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.136 4.136 4 H 0.111 0.889 5 C -0.115 4.115 6 C -0.171 4.171 7 H 0.105 0.895 8 C 0.610 3.390 9 O -0.557 6.557 10 N -0.612 5.612 11 C 0.098 3.902 12 C 0.112 3.888 13 N -0.605 5.605 14 C 0.110 3.890 15 C -0.172 4.172 16 C 0.528 3.472 17 O -0.486 6.486 18 C -0.150 4.150 19 S -0.055 6.055 20 C -0.537 4.537 21 H 0.070 0.930 22 C 0.076 3.924 23 N -0.866 5.866 24 Si 0.916 3.084 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.086 3.914 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.268 0.732 47 H 0.075 0.925 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.655 -7.305 12.591 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 C -0.154 4.154 4 H 0.129 0.871 5 C -0.152 4.152 6 C -0.192 4.192 7 H 0.123 0.877 8 C 0.402 3.598 9 O -0.436 6.436 10 N -0.347 5.347 11 C -0.027 4.027 12 C 0.006 3.994 13 N -0.341 5.341 14 C -0.013 4.013 15 C -0.230 4.230 16 C 0.316 3.684 17 O -0.358 6.358 18 C -0.300 4.300 19 S 0.172 5.828 20 C -0.685 4.685 21 H 0.088 0.912 22 C -0.134 4.134 23 N -0.502 5.502 24 Si 0.742 3.258 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 C -0.039 4.039 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.428 -8.097 13.250 18.705 hybrid contribution 1.488 1.673 -1.447 2.666 sum 11.916 -6.424 11.803 17.960 Atomic orbital electron populations 1.21733 0.95492 1.01100 1.02269 1.21100 0.96009 0.94232 1.01447 1.22498 0.91473 0.97888 1.03561 0.87054 1.23013 0.98821 1.04324 0.89045 1.21917 0.95963 0.97601 1.03734 0.87699 1.18700 0.78896 0.84858 0.77334 1.90638 1.52606 1.49712 1.50646 1.48938 1.03412 1.28243 1.54085 1.23196 0.82876 0.95309 1.01304 1.22304 0.98379 0.92669 0.86006 1.47732 1.18524 1.45113 1.22714 1.21533 0.88077 0.92642 0.99068 1.22228 0.99307 1.00855 1.00617 1.20340 0.81016 0.82595 0.84463 1.90724 1.38228 1.37149 1.69711 1.23599 1.07556 1.01911 0.96967 1.85248 1.13394 1.59096 1.25051 1.22817 1.06553 1.30053 1.09053 0.91212 1.24952 0.94502 0.95859 0.98074 1.69999 1.06108 1.38015 1.36043 0.86274 0.77676 0.80457 0.81401 1.19985 1.20813 1.19991 1.23366 0.89244 0.94892 0.96350 0.93054 0.92751 0.92246 0.91869 0.92217 0.88722 0.86739 0.89827 0.89810 0.86935 0.89931 0.90588 0.92468 0.91957 0.91662 0.89833 0.89588 0.92171 0.90690 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.87 37.16 0.37 -1.38 16 2 C -0.09 -1.15 6.22 -26.73 -0.17 -1.32 16 3 C -0.14 -2.19 5.25 -90.59 -0.48 -2.67 16 4 H 0.11 2.02 7.60 -51.92 -0.39 1.63 16 5 C -0.11 -2.09 9.01 -26.73 -0.24 -2.34 16 6 C -0.17 -2.85 5.37 -91.73 -0.49 -3.35 16 7 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 8 C 0.61 11.55 5.72 -10.98 -0.06 11.48 16 9 O -0.56 -12.81 17.03 5.56 0.09 -12.71 16 10 N -0.61 -9.37 2.09 -185.09 -0.39 -9.76 16 11 C 0.10 1.09 7.37 -8.37 -0.06 1.03 16 12 C 0.11 1.12 4.87 -67.69 -0.33 0.79 16 13 N -0.60 -7.49 2.74 -165.75 -0.45 -7.94 16 14 C 0.11 1.03 5.95 -4.03 -0.02 1.01 16 15 C -0.17 -1.46 10.24 37.16 0.38 -1.08 16 16 C 0.53 9.17 7.26 -10.99 -0.08 9.09 16 17 O -0.49 -9.56 7.92 5.55 0.04 -9.52 16 18 C -0.15 -2.93 4.71 36.00 0.17 -2.76 16 19 S -0.05 -1.42 20.57 -107.50 -2.21 -3.64 16 20 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 21 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 22 C 0.08 2.13 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 24 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 C 0.09 1.05 8.17 -8.52 -0.07 0.98 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.77 7.87 -51.93 -0.41 0.36 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.61 8.03 -51.93 -0.42 1.20 16 35 H 0.11 2.59 7.85 -51.93 -0.41 2.18 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.09 7.38 -51.93 -0.38 0.70 16 38 H 0.11 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.08 0.86 6.44 -51.93 -0.33 0.52 16 40 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.67 7.22 -51.93 -0.37 0.29 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 1.59 7.40 -51.91 -0.38 1.20 16 45 H 0.09 1.58 7.18 -51.92 -0.37 1.20 16 46 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 400.13 15.07 6.03 6.03 Total: -1.00 -35.64 400.13 -10.15 -45.79 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.09 Total: 3.79 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -0.89 Total: -3.25 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.11 Total: -42.82 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.14 Total: -22.23 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.21 Total: -3.64 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.64 -10.15 -45.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079344749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.750 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds