Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32997 * 120.00282 * 2 1 4 4 C 1.50701 * 119.99643 * 359.97438 * 3 2 1 5 5 C 1.47095 * 120.00234 * 180.02562 * 3 2 1 6 6 O 1.21614 * 120.00194 * 359.97438 * 5 3 2 7 7 N 1.34777 * 119.99979 * 179.97438 * 5 3 2 8 8 C 1.46500 * 119.99831 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47200 * 174.98401 * 8 7 5 10 10 H 1.09002 * 109.58480 * 59.66796 * 9 8 7 11 11 C 1.53195 * 109.58644 * 299.38732 * 9 8 7 12 12 C 1.53070 * 109.29491 * 185.71944 * 11 9 8 13 13 C 1.53043 * 109.66114 * 61.14847 * 12 11 9 14 14 C 1.53189 * 109.31364 * 298.70082 * 13 12 11 15 15 N 1.46923 * 109.58758 * 179.97438 * 9 8 7 16 16 C 1.34778 * 120.63127 * 353.41858 * 15 9 8 17 17 O 1.21279 * 119.99895 * 5.42956 * 16 15 9 18 18 C 1.50701 * 119.99941 * 185.42786 * 16 15 9 19 19 S 1.80998 * 109.47074 * 179.97438 * 18 16 15 20 20 C 1.76207 * 99.99927 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99587 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99767 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00272 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99588 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47166 * 60.00069 * 24 22 20 26 26 H 1.48503 * 109.46881 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47097 * 299.99667 * 24 22 20 28 28 H 1.08992 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46771 * 60.00412 * 1 2 3 30 30 H 1.08993 * 109.47121 * 300.00392 * 1 2 3 31 31 H 1.08003 * 120.00104 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47089 * 90.00373 * 4 3 2 33 33 H 1.09001 * 109.46817 * 210.00178 * 4 3 2 34 34 H 1.08997 * 109.47696 * 330.00576 * 4 3 2 35 35 H 0.96995 * 120.00078 * 359.97438 * 7 5 3 36 36 H 1.09005 * 109.47414 * 294.97733 * 8 7 5 37 37 H 1.08996 * 109.47709 * 54.98001 * 8 7 5 38 38 H 1.08995 * 109.49192 * 305.52754 * 11 9 8 39 39 H 1.08997 * 109.49758 * 65.62389 * 11 9 8 40 40 H 1.09002 * 109.34459 * 301.12328 * 12 11 9 41 41 H 1.08995 * 109.44037 * 181.23616 * 12 11 9 42 42 H 1.08995 * 109.49783 * 178.74900 * 13 12 11 43 43 H 1.09003 * 109.52005 * 58.66908 * 13 12 11 44 44 H 1.08998 * 109.58574 * 294.84711 * 14 13 12 45 45 H 1.08999 * 109.58691 * 174.41916 * 14 13 12 46 46 H 1.09003 * 109.47505 * 300.00433 * 18 16 15 47 47 H 1.09001 * 109.47146 * 59.99935 * 18 16 15 48 48 H 0.97000 * 120.00051 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2511 0.0985 -0.0006 7 7 4.3169 2.3189 -0.0011 8 6 5.7819 2.3189 -0.0022 9 6 6.2919 3.7559 -0.1287 10 1 5.9254 4.3488 0.7093 11 6 5.7943 4.3635 -1.4441 12 6 6.4230 5.7464 -1.6322 13 6 7.9461 5.6143 -1.7030 14 6 8.4649 5.0222 -0.3889 15 7 7.7611 3.7588 -0.1295 16 6 8.4502 2.6242 0.1034 17 8 7.8616 1.5701 0.2185 18 6 9.9521 2.6654 0.2208 19 16 10.5789 0.9963 0.5324 20 6 12.3066 1.3304 0.6236 21 1 12.6688 2.3399 0.4970 22 6 13.2020 0.2960 0.8581 23 7 12.7605 -0.9343 1.0129 24 14 15.0335 0.6504 0.9555 25 1 15.2944 1.6081 2.0600 26 1 15.7692 -0.6137 1.2129 27 1 15.4929 1.2383 -0.3284 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 2.0470 -0.9353 0.0004 32 1 1.2365 2.7718 1.0270 33 1 2.0078 3.2164 -0.5144 34 1 0.4663 2.3265 -0.5146 35 1 3.8319 3.1590 -0.0015 36 1 6.1460 1.8849 0.9291 37 1 6.1446 1.7292 -0.8440 38 1 6.0826 3.7189 -2.2744 39 1 4.7087 4.4558 -1.4145 40 1 6.1525 6.3835 -0.7902 41 1 6.0535 6.1901 -2.5566 42 1 8.3896 6.5976 -1.8592 43 1 8.2167 4.9577 -2.5299 44 1 8.2756 5.7204 0.4264 45 1 9.5354 4.8340 -0.4704 46 1 10.3788 3.0470 -0.7068 47 1 10.2342 3.3191 1.0462 48 1 13.3862 -1.6570 1.1772 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081897855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = -54.200661 kcal Electronic energy + Delta-G solvation = -27543.548873 eV Core-core repulsion = 23725.156073 eV Total energy + Delta-G solvation = -3818.392799 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.59176 -39.49773 -37.26759 -35.74691 -35.01321 -32.94706 -32.41041 -31.82041 -29.59647 -29.07090 -26.82759 -26.15048 -25.43724 -24.62819 -22.57247 -21.28223 -21.10449 -19.34882 -18.49143 -17.62568 -17.20576 -16.61555 -16.18990 -15.61009 -15.37088 -15.07796 -14.78858 -14.67209 -14.36780 -14.25706 -13.99244 -13.84134 -13.64017 -13.59230 -13.34568 -12.98122 -12.91263 -12.57284 -12.55394 -12.44814 -12.30740 -12.09002 -11.80417 -11.49602 -11.30768 -11.17999 -11.03989 -11.02671 -10.92428 -10.80430 -10.74334 -9.83809 -9.79725 -9.26683 -9.04680 -9.00393 -8.86456 -8.43276 -8.19889 -6.47767 -6.19176 -3.90049 1.27715 2.75108 2.99365 3.20456 3.24481 3.29541 3.33845 3.37090 3.65032 4.21706 4.41821 4.54166 4.58716 4.62695 4.67973 4.81179 4.91749 4.95869 4.98202 5.04579 5.08328 5.15515 5.17588 5.26125 5.33880 5.39582 5.43717 5.51681 5.55965 5.57708 5.60123 5.66561 5.74245 5.79719 5.82640 5.86949 6.04481 6.11389 6.20260 6.21389 6.26337 6.36907 6.48259 6.71478 7.49072 7.58040 7.60813 8.34104 8.36642 8.53841 9.25538 10.88066 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.002681 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.968350 B =10442.051437 C =12429.170443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.191 4.191 4 C -0.116 4.116 5 C 0.548 3.452 6 O -0.531 6.531 7 N -0.732 5.732 8 C 0.126 3.874 9 C 0.139 3.861 10 H 0.073 0.927 11 C -0.133 4.133 12 C -0.118 4.118 13 C -0.137 4.137 14 C 0.110 3.890 15 N -0.615 5.615 16 C 0.530 3.470 17 O -0.501 6.501 18 C -0.151 4.151 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.390 0.610 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.536 15.984 -4.271 27.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.099 4.099 3 C -0.194 4.194 4 C -0.173 4.173 5 C 0.335 3.665 6 O -0.409 6.409 7 N -0.387 5.387 8 C 0.004 3.996 9 C 0.035 3.965 10 H 0.090 0.910 11 C -0.171 4.171 12 C -0.155 4.155 13 C -0.175 4.175 14 C -0.014 4.014 15 N -0.352 5.352 16 C 0.319 3.681 17 O -0.374 6.374 18 C -0.301 4.301 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.225 0.775 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.851 13.457 -4.055 26.828 hybrid contribution 1.760 2.050 -0.117 2.704 sum -21.092 15.507 -4.172 26.509 Atomic orbital electron populations 1.20975 0.92240 1.03019 1.02377 1.23584 0.96130 0.98176 0.91975 1.21479 0.92960 0.96639 1.08342 1.20810 0.99979 0.94125 1.02368 1.18316 0.87483 0.83842 0.76852 1.90864 1.69903 1.31066 1.49027 1.46285 1.08349 1.08205 1.75860 1.22270 0.76853 0.94443 1.06048 1.21359 0.80726 0.96919 0.97485 0.90957 1.22039 1.00006 0.97090 0.97986 1.21501 0.95410 0.96639 1.01961 1.21937 0.96021 1.01435 0.98140 1.21736 0.97739 0.85024 0.96857 1.48108 1.04939 1.09236 1.72931 1.20451 0.89563 0.82836 0.75271 1.90777 1.68882 1.29582 1.48139 1.23580 0.93472 1.08424 1.04645 1.85492 1.04216 0.99912 1.93468 1.22815 0.91572 0.96882 1.57218 0.91029 1.24989 0.99542 0.94437 0.94596 1.70008 1.35365 0.99501 1.45291 0.86236 0.82822 0.77783 0.78725 1.19957 1.20814 1.19954 0.91428 0.90794 0.90868 0.85508 0.91013 0.91951 0.91010 0.77518 0.88650 0.89425 0.91033 0.91125 0.91804 0.91656 0.90638 0.91195 0.91441 0.88970 0.89316 0.89271 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.79 8.91 36.01 0.32 -0.47 16 2 C -0.08 -0.77 9.84 -36.13 -0.36 -1.13 16 3 C -0.19 -1.99 6.00 -102.85 -0.62 -2.61 16 4 C -0.12 -0.74 9.14 36.01 0.33 -0.41 16 5 C 0.55 7.98 7.75 -12.67 -0.10 7.88 16 6 O -0.53 -10.58 16.22 5.27 0.09 -10.50 16 7 N -0.73 -8.91 5.18 -61.49 -0.32 -9.23 16 8 C 0.13 1.91 3.52 -4.04 -0.01 1.89 16 9 C 0.14 1.63 3.04 -67.60 -0.21 1.42 16 10 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 11 C -0.13 -1.20 5.13 -26.59 -0.14 -1.34 16 12 C -0.12 -0.87 5.88 -26.67 -0.16 -1.03 16 13 C -0.14 -1.15 6.08 -26.61 -0.16 -1.31 16 14 C 0.11 1.13 6.33 -3.71 -0.02 1.10 16 15 N -0.61 -8.41 2.97 -165.22 -0.49 -8.91 16 16 C 0.53 9.92 7.63 -10.98 -0.08 9.84 16 17 O -0.50 -11.22 11.27 5.56 0.06 -11.16 16 18 C -0.15 -3.04 4.56 36.01 0.16 -2.88 16 19 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 20 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.49 13.22 55.49 0.73 -25.76 16 24 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.37 7.40 -51.93 -0.38 -0.01 16 30 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 31 H 0.13 1.47 7.49 -52.48 -0.39 1.08 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.33 6.70 -51.93 -0.35 -0.02 16 34 H 0.07 0.36 6.49 -51.93 -0.34 0.02 16 35 H 0.39 3.28 5.68 -40.82 -0.23 3.04 16 36 H 0.10 1.81 6.45 -51.93 -0.33 1.47 16 37 H 0.09 1.64 7.03 -51.93 -0.37 1.28 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.50 7.19 -51.93 -0.37 0.12 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.99 5.96 -51.93 -0.31 0.68 16 46 H 0.09 1.66 7.46 -51.92 -0.39 1.27 16 47 H 0.09 1.67 8.12 -51.91 -0.42 1.25 16 48 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 392.56 15.07 5.92 5.92 Total: -1.00 -37.03 392.56 -9.74 -46.77 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.66 Total: 2.19 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -0.84 Total: -2.06 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.08 Total: -43.90 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.15 Total: -21.66 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.03 -9.74 -46.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081897855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.429 kcal (2) G-P(sol) polarization free energy of solvation -37.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds