Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32997 * 120.00282 * 2 1 4 4 C 1.50701 * 119.99643 * 359.97438 * 3 2 1 5 5 C 1.47095 * 120.00234 * 180.02562 * 3 2 1 6 6 O 1.21614 * 120.00194 * 359.97438 * 5 3 2 7 7 N 1.34777 * 119.99979 * 179.97438 * 5 3 2 8 8 C 1.46500 * 119.99831 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47200 * 174.98401 * 8 7 5 10 10 H 1.09002 * 109.58480 * 59.66796 * 9 8 7 11 11 C 1.53195 * 109.58644 * 299.38732 * 9 8 7 12 12 C 1.53070 * 109.29491 * 185.71944 * 11 9 8 13 13 C 1.53043 * 109.66114 * 61.14847 * 12 11 9 14 14 C 1.53189 * 109.31364 * 298.70082 * 13 12 11 15 15 N 1.46923 * 109.58758 * 179.97438 * 9 8 7 16 16 C 1.34778 * 120.63127 * 353.41858 * 15 9 8 17 17 O 1.21279 * 119.99895 * 5.42956 * 16 15 9 18 18 C 1.50701 * 119.99941 * 185.42786 * 16 15 9 19 19 S 1.80998 * 109.47074 * 179.97438 * 18 16 15 20 20 C 1.76207 * 99.99927 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99587 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99767 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00272 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99588 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47166 * 60.00069 * 24 22 20 26 26 H 1.48503 * 109.46881 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47097 * 299.99667 * 24 22 20 28 28 H 1.08992 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46771 * 60.00412 * 1 2 3 30 30 H 1.08993 * 109.47121 * 300.00392 * 1 2 3 31 31 H 1.08003 * 120.00104 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47089 * 90.00373 * 4 3 2 33 33 H 1.09001 * 109.46817 * 210.00178 * 4 3 2 34 34 H 1.08997 * 109.47696 * 330.00576 * 4 3 2 35 35 H 0.96995 * 120.00078 * 359.97438 * 7 5 3 36 36 H 1.09005 * 109.47414 * 294.97733 * 8 7 5 37 37 H 1.08996 * 109.47709 * 54.98001 * 8 7 5 38 38 H 1.08995 * 109.49192 * 305.52754 * 11 9 8 39 39 H 1.08997 * 109.49758 * 65.62389 * 11 9 8 40 40 H 1.09002 * 109.34459 * 301.12328 * 12 11 9 41 41 H 1.08995 * 109.44037 * 181.23616 * 12 11 9 42 42 H 1.08995 * 109.49783 * 178.74900 * 13 12 11 43 43 H 1.09003 * 109.52005 * 58.66908 * 13 12 11 44 44 H 1.08998 * 109.58574 * 294.84711 * 14 13 12 45 45 H 1.08999 * 109.58691 * 174.41916 * 14 13 12 46 46 H 1.09003 * 109.47505 * 300.00433 * 18 16 15 47 47 H 1.09001 * 109.47146 * 59.99935 * 18 16 15 48 48 H 0.97000 * 120.00051 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2511 0.0985 -0.0006 7 7 4.3169 2.3189 -0.0011 8 6 5.7819 2.3189 -0.0022 9 6 6.2919 3.7559 -0.1287 10 1 5.9254 4.3488 0.7093 11 6 5.7943 4.3635 -1.4441 12 6 6.4230 5.7464 -1.6322 13 6 7.9461 5.6143 -1.7030 14 6 8.4649 5.0222 -0.3889 15 7 7.7611 3.7588 -0.1295 16 6 8.4502 2.6242 0.1034 17 8 7.8616 1.5701 0.2185 18 6 9.9521 2.6654 0.2208 19 16 10.5789 0.9963 0.5324 20 6 12.3066 1.3304 0.6236 21 1 12.6688 2.3399 0.4970 22 6 13.2020 0.2960 0.8581 23 7 12.7605 -0.9343 1.0129 24 14 15.0335 0.6504 0.9555 25 1 15.2944 1.6081 2.0600 26 1 15.7692 -0.6137 1.2129 27 1 15.4929 1.2383 -0.3284 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 2.0470 -0.9353 0.0004 32 1 1.2365 2.7718 1.0270 33 1 2.0078 3.2164 -0.5144 34 1 0.4663 2.3265 -0.5146 35 1 3.8319 3.1590 -0.0015 36 1 6.1460 1.8849 0.9291 37 1 6.1446 1.7292 -0.8440 38 1 6.0826 3.7189 -2.2744 39 1 4.7087 4.4558 -1.4145 40 1 6.1525 6.3835 -0.7902 41 1 6.0535 6.1901 -2.5566 42 1 8.3896 6.5976 -1.8592 43 1 8.2167 4.9577 -2.5299 44 1 8.2756 5.7204 0.4264 45 1 9.5354 4.8340 -0.4704 46 1 10.3788 3.0470 -0.7068 47 1 10.2342 3.3191 1.0462 48 1 13.3862 -1.6570 1.1772 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081897855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = -80.429783 kcal Electronic energy + Delta-G solvation = -27544.686253 eV Core-core repulsion = 23725.156073 eV Total energy + Delta-G solvation = -3819.530179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.80319 -40.68844 -38.46199 -36.54543 -36.21852 -34.60824 -34.00667 -32.82055 -30.52617 -30.21486 -27.89317 -27.58179 -26.86429 -25.56256 -23.55911 -22.38980 -22.05003 -20.51168 -19.84137 -19.25408 -18.24900 -17.81240 -17.37584 -16.90717 -16.88668 -16.57468 -16.27886 -15.87461 -15.44425 -15.24950 -15.11186 -14.95624 -14.57135 -14.41945 -14.33828 -14.26575 -14.21807 -13.58684 -13.46051 -13.35092 -13.33309 -13.17984 -12.94216 -12.87024 -12.80519 -12.63648 -12.21556 -12.17396 -11.96793 -11.75269 -11.65851 -11.55250 -11.14568 -11.03742 -10.42091 -10.27095 -10.25041 -9.91385 -9.58588 -8.70144 -8.35829 -6.15250 0.38342 1.22235 1.42504 1.42642 1.52561 1.53058 1.86083 2.25486 2.25875 2.38688 2.97938 3.22473 3.46821 3.69229 3.77487 3.83841 3.91895 4.00516 4.06266 4.13913 4.23209 4.25008 4.29492 4.41035 4.46584 4.48664 4.63623 4.71778 4.76720 4.80585 4.89293 4.92157 4.96817 5.03828 5.04827 5.08151 5.15173 5.17974 5.23420 5.34240 5.38956 5.46861 5.48621 5.59357 5.68381 6.17437 6.23815 6.55816 7.04517 7.11344 7.27364 8.73276 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.002681 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.968350 B =10442.051437 C =12429.170443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 C -0.201 4.201 4 C -0.110 4.110 5 C 0.535 3.465 6 O -0.601 6.601 7 N -0.710 5.710 8 C 0.140 3.860 9 C 0.142 3.858 10 H 0.106 0.894 11 C -0.127 4.127 12 C -0.112 4.112 13 C -0.134 4.134 14 C 0.099 3.901 15 N -0.603 5.603 16 C 0.525 3.475 17 O -0.551 6.551 18 C -0.121 4.121 19 S -0.159 6.159 20 C -0.545 4.545 21 H 0.085 0.915 22 C 0.011 3.989 23 N -0.913 5.913 24 Si 1.001 2.999 25 H -0.260 1.260 26 H -0.280 1.280 27 H -0.260 1.260 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.414 0.586 36 H 0.050 0.950 37 H 0.041 0.959 38 H 0.045 0.955 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.050 0.950 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.108 0.892 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.069 20.998 -4.665 32.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 C -0.204 4.204 4 C -0.167 4.167 5 C 0.325 3.675 6 O -0.484 6.484 7 N -0.366 5.366 8 C 0.017 3.983 9 C 0.039 3.961 10 H 0.123 0.877 11 C -0.166 4.166 12 C -0.149 4.149 13 C -0.172 4.172 14 C -0.022 4.022 15 N -0.338 5.338 16 C 0.313 3.687 17 O -0.428 6.428 18 C -0.272 4.272 19 S 0.068 5.932 20 C -0.692 4.692 21 H 0.103 0.897 22 C -0.194 4.194 23 N -0.550 5.550 24 Si 0.822 3.178 25 H -0.184 1.184 26 H -0.205 1.205 27 H -0.185 1.185 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.253 0.747 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.069 0.931 44 H 0.116 0.884 45 H 0.104 0.896 46 H 0.124 0.876 47 H 0.126 0.874 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.432 18.594 -4.466 31.025 hybrid contribution 2.122 0.521 -0.016 2.185 sum -22.310 19.115 -4.482 29.718 Atomic orbital electron populations 1.21025 0.88723 1.04073 1.04019 1.23814 0.98532 0.96822 0.90761 1.21562 0.90176 0.99186 1.09474 1.20887 1.00415 0.91575 1.03793 1.19244 0.89580 0.83234 0.75416 1.90831 1.71691 1.33552 1.52309 1.45995 1.07132 1.08889 1.74549 1.21694 0.78469 0.96361 1.01803 1.21553 0.79271 0.94686 1.00638 0.87653 1.22037 1.01868 0.97739 0.94911 1.21514 0.94123 0.95307 1.03941 1.21949 0.97201 1.02165 0.95921 1.22123 0.97227 0.83582 0.99292 1.48112 1.05990 1.08913 1.70790 1.20270 0.89029 0.83717 0.75710 1.90808 1.69480 1.31842 1.50672 1.23375 0.94723 1.03072 1.06014 1.85745 1.05940 1.07447 1.94021 1.23157 0.91399 0.97618 1.57053 0.89734 1.26192 1.05440 0.93979 0.93766 1.70199 1.37373 1.00825 1.46589 0.84974 0.75381 0.77906 0.79542 1.18431 1.20492 1.18480 0.90900 0.88760 0.89046 0.88783 0.89584 0.90627 0.88812 0.74721 0.93148 0.94043 0.93591 0.88233 0.89426 0.89830 0.87823 0.93143 0.88420 0.89621 0.87599 0.87375 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.91 71.24 0.63 -0.59 16 2 C -0.08 -1.57 9.84 24.52 0.24 -1.33 16 3 C -0.20 -4.11 6.00 -18.70 -0.11 -4.22 16 4 C -0.11 -1.03 9.14 71.24 0.65 -0.38 16 5 C 0.54 16.62 7.75 86.57 0.67 17.29 16 6 O -0.60 -26.73 16.22 -4.07 -0.07 -26.80 16 7 N -0.71 -17.64 5.18 -466.71 -2.42 -20.06 16 8 C 0.14 4.57 3.52 86.38 0.30 4.87 16 9 C 0.14 3.14 3.04 44.98 0.14 3.28 16 10 H 0.11 1.74 8.14 -2.39 -0.02 1.73 16 11 C -0.13 -1.97 5.13 30.68 0.16 -1.81 16 12 C -0.11 -1.13 5.88 30.63 0.18 -0.95 16 13 C -0.13 -1.77 6.08 30.67 0.19 -1.58 16 14 C 0.10 1.75 6.33 86.36 0.55 2.30 16 15 N -0.60 -16.11 2.97 -795.02 -2.36 -18.48 16 16 C 0.52 20.57 7.63 87.66 0.67 21.23 16 17 O -0.55 -27.05 11.27 -3.03 -0.03 -27.09 16 18 C -0.12 -5.00 4.56 71.24 0.33 -4.68 16 19 S -0.16 -9.23 20.57 -56.49 -1.16 -10.39 16 20 C -0.54 -31.88 9.50 67.95 0.65 -31.23 16 21 H 0.08 4.54 7.80 -2.91 -0.02 4.52 16 22 C 0.01 0.63 5.49 84.86 0.47 1.09 16 23 N -0.91 -58.07 13.22 21.65 0.29 -57.78 16 24 Si 1.00 44.49 29.55 68.60 2.03 46.52 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 27 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.62 7.40 -2.39 -0.02 0.60 16 30 H 0.09 0.65 8.10 -2.39 -0.02 0.63 16 31 H 0.09 2.46 7.49 -2.91 -0.02 2.44 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.50 6.70 -2.39 -0.02 0.48 16 34 H 0.09 0.52 6.49 -2.39 -0.02 0.50 16 35 H 0.41 6.08 5.68 -92.71 -0.53 5.55 16 36 H 0.05 2.12 6.45 -2.38 -0.02 2.10 16 37 H 0.04 1.74 7.03 -2.39 -0.02 1.72 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.10 0.98 7.19 -2.39 -0.02 0.96 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.09 1.64 5.96 -2.39 -0.01 1.63 16 46 H 0.11 3.98 7.46 -2.39 -0.02 3.96 16 47 H 0.11 4.03 8.12 -2.40 -0.02 4.01 16 48 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -92.65 392.56 2.41 -90.24 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.43 Total: 20.54 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 5.70 Total: 3.29 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -4.50 Total: -96.32 kcal Atomic # 8 Polarization: -53.78 SS G_CDS: -0.10 Total: -53.88 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.16 Total: -10.39 kcal Total: -92.65 2.41 -90.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081897855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.815 kcal (2) G-P(sol) polarization free energy of solvation -92.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds