Wall clock time and date at job start Sat Apr 11 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32999 * 120.00233 * 2 1 4 4 C 1.50695 * 120.00233 * 179.97438 * 3 2 1 5 5 C 1.47104 * 119.99581 * 359.97438 * 3 2 1 6 6 O 1.21609 * 119.99918 * 0.02562 * 5 3 2 7 7 N 1.34780 * 119.99811 * 180.02562 * 5 3 2 8 8 C 1.46495 * 119.99773 * 180.02562 * 7 5 3 9 9 C 1.53001 * 109.47069 * 174.73276 * 8 7 5 10 10 H 1.09000 * 109.58450 * 312.80834 * 9 8 7 11 11 C 1.53190 * 109.70648 * 192.45098 * 9 8 7 12 12 C 1.53039 * 109.31358 * 185.50699 * 11 9 8 13 13 C 1.53041 * 109.53812 * 61.36384 * 12 11 9 14 14 C 1.53619 * 109.24141 * 298.50907 * 13 12 11 15 15 N 1.46924 * 108.54330 * 54.85809 * 14 13 12 16 16 C 1.34783 * 120.63361 * 126.36691 * 15 14 13 17 17 O 1.21276 * 120.00064 * 174.61074 * 16 15 14 18 18 C 1.50700 * 119.99764 * 354.60704 * 16 15 14 19 19 S 1.81001 * 109.47161 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99813 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00499 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99601 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99799 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00111 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.46913 * 270.00062 * 24 22 20 26 26 H 1.48499 * 109.47096 * 150.00034 * 24 22 20 27 27 H 1.48498 * 109.47492 * 29.99967 * 24 22 20 28 28 H 1.09005 * 109.46988 * 300.00113 * 1 2 3 29 29 H 1.09001 * 109.47093 * 60.00214 * 1 2 3 30 30 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.00488 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47192 * 270.00035 * 4 3 2 33 33 H 1.09001 * 109.46966 * 29.99742 * 4 3 2 34 34 H 1.08997 * 109.47249 * 150.00049 * 4 3 2 35 35 H 0.97003 * 120.00010 * 359.97438 * 7 5 3 36 36 H 1.09001 * 109.47498 * 54.73299 * 8 7 5 37 37 H 1.09002 * 109.46865 * 294.72926 * 8 7 5 38 38 H 1.09008 * 109.49553 * 305.45640 * 11 9 8 39 39 H 1.08994 * 109.49611 * 65.52089 * 11 9 8 40 40 H 1.09004 * 109.46138 * 181.38152 * 12 11 9 41 41 H 1.08993 * 109.46014 * 301.35294 * 12 11 9 42 42 H 1.09000 * 109.49890 * 58.58874 * 13 12 11 43 43 H 1.09005 * 109.49760 * 178.64683 * 13 12 11 44 44 H 1.08999 * 109.74200 * 295.12205 * 14 13 12 45 45 H 1.09001 * 109.66382 * 174.54897 * 14 13 12 46 46 H 1.09006 * 109.46718 * 59.99998 * 18 16 15 47 47 H 1.08996 * 109.47473 * 300.00656 * 18 16 15 48 48 H 0.96998 * 120.00391 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1518 0.0006 5 6 1.4364 2.4257 -0.0006 6 8 0.2203 2.4257 -0.0006 7 7 2.1103 3.5929 -0.0011 8 6 1.3778 4.8616 -0.0011 9 6 2.3668 6.0215 0.1307 10 1 3.0730 5.8102 0.9337 11 6 1.6074 7.3150 0.4419 12 6 2.5868 8.4909 0.4360 13 6 3.2187 8.6237 -0.9515 14 6 4.0007 7.3420 -1.2765 15 7 3.0956 6.1935 -1.1334 16 6 2.9410 5.3114 -2.1407 17 8 2.2682 4.3158 -1.9768 18 6 3.6042 5.5622 -3.4704 19 16 3.2108 4.2086 -4.6058 20 6 4.0882 4.7447 -6.0366 21 1 4.6454 5.6696 -6.0135 22 6 4.0625 3.9787 -7.1939 23 7 4.7176 4.3794 -8.2630 24 14 3.0971 2.3801 -7.2346 25 1 3.9755 1.2605 -6.8099 26 1 2.6101 2.1309 -8.6152 27 1 1.9384 2.4778 -6.3111 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.0470 -0.9353 0.0004 32 1 4.0419 1.1520 1.0284 33 1 4.0424 0.2616 -0.5129 34 1 4.0425 2.0416 -0.5133 35 1 3.0804 3.5929 -0.0007 36 1 0.6826 4.8798 0.8382 37 1 0.8235 4.9610 -0.9344 38 1 0.8396 7.4772 -0.3147 39 1 1.1399 7.2352 1.4233 40 1 2.0532 9.4093 0.6814 41 1 3.3682 8.3164 1.1755 42 1 2.4358 8.7736 -1.6950 43 1 3.8981 9.4761 -0.9619 44 1 4.8373 7.2361 -0.5859 45 1 4.3727 7.3888 -2.3000 46 1 4.6841 5.6185 -3.3329 47 1 3.2415 6.5024 -3.8858 48 1 4.7000 3.8440 -9.0716 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081897856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:12 Heat of formation + Delta-G solvation = -55.581874 kcal Electronic energy + Delta-G solvation = -28715.611481 eV Core-core repulsion = 24897.158788 eV Total energy + Delta-G solvation = -3818.452693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.86181 -40.44896 -38.33819 -36.22451 -35.67799 -34.68994 -33.98568 -32.82940 -30.78178 -30.51025 -27.92882 -27.67762 -25.89203 -25.39208 -23.58033 -22.86514 -21.71869 -20.68398 -20.13415 -19.36225 -17.94389 -17.33304 -17.21059 -17.08577 -16.81669 -16.47422 -16.07651 -15.75215 -15.35220 -15.06735 -15.03296 -14.96599 -14.80005 -14.58514 -14.30545 -14.15113 -13.75115 -13.67036 -13.57766 -13.42822 -13.37348 -13.22145 -13.13270 -13.02713 -12.82193 -12.61421 -12.33492 -12.17105 -11.91727 -11.89540 -11.60937 -11.53072 -11.19127 -10.55437 -10.49411 -10.24729 -10.06956 -9.73793 -9.34647 -8.98579 -8.53581 -6.22583 0.53541 0.97815 1.27083 1.44028 1.51774 1.59137 2.05871 2.21946 2.35709 2.57642 2.69020 2.85074 3.43327 3.82337 3.83575 3.86745 3.98277 4.01335 4.12095 4.19004 4.20744 4.26164 4.38507 4.42128 4.46770 4.53207 4.65721 4.72463 4.76678 4.82529 4.83470 4.88791 4.95112 5.00226 5.03121 5.06815 5.19896 5.24351 5.24603 5.47624 5.53406 5.61126 5.68787 5.69140 5.71802 6.09497 6.29516 6.73245 6.92437 7.18282 7.44800 8.59056 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007595 B = 0.005044 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3685.620422 B = 5550.089992 C = 8574.112930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 C -0.205 4.205 4 C -0.106 4.106 5 C 0.540 3.460 6 O -0.591 6.591 7 N -0.678 5.678 8 C 0.136 3.864 9 C 0.144 3.856 10 H 0.102 0.898 11 C -0.124 4.124 12 C -0.111 4.111 13 C -0.134 4.134 14 C 0.101 3.899 15 N -0.605 5.605 16 C 0.522 3.478 17 O -0.524 6.524 18 C -0.106 4.106 19 S -0.172 6.172 20 C -0.527 4.527 21 H 0.061 0.939 22 C 0.049 3.951 23 N -0.917 5.917 24 Si 0.912 3.088 25 H -0.260 1.260 26 H -0.261 1.261 27 H -0.243 1.243 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.400 0.600 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.447 3.980 24.320 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.208 4.208 4 C -0.163 4.163 5 C 0.330 3.670 6 O -0.475 6.475 7 N -0.327 5.327 8 C 0.013 3.987 9 C 0.041 3.959 10 H 0.119 0.881 11 C -0.163 4.163 12 C -0.148 4.148 13 C -0.172 4.172 14 C -0.021 4.021 15 N -0.340 5.340 16 C 0.308 3.692 17 O -0.400 6.400 18 C -0.256 4.256 19 S 0.055 5.945 20 C -0.675 4.675 21 H 0.079 0.921 22 C -0.156 4.156 23 N -0.555 5.555 24 Si 0.734 3.266 25 H -0.185 1.185 26 H -0.185 1.185 27 H -0.167 1.167 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.171 0.829 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.125 0.875 47 H 0.117 0.883 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.209 2.555 24.371 24.604 hybrid contribution 0.940 0.778 -1.421 1.873 sum -1.269 3.333 22.951 23.226 Atomic orbital electron populations 1.20878 0.92780 1.01345 1.01973 1.23853 0.96769 0.97620 0.91573 1.21715 0.97744 0.92734 1.08599 1.20731 0.89228 1.03140 1.03159 1.18706 0.86941 0.85318 0.76000 1.90696 1.15290 1.88296 1.53227 1.45622 1.09920 1.05003 1.72148 1.21309 0.94561 0.82368 1.00508 1.21585 0.93646 0.95030 0.85638 0.88052 1.21907 0.98299 0.93136 1.02969 1.21483 0.98734 0.97796 0.96831 1.22006 1.00235 0.97155 0.97839 1.22125 0.92218 0.84301 1.03483 1.48107 1.45516 1.26645 1.13778 1.19963 0.81228 0.83084 0.84906 1.90912 1.39505 1.28244 1.81296 1.23299 1.04572 1.02295 0.95482 1.84745 1.68450 1.32450 1.08845 1.22468 1.35310 1.11321 0.98365 0.92112 1.25485 0.95344 1.00702 0.94081 1.70009 1.42108 1.40225 1.03133 0.85908 0.81000 0.80309 0.79370 1.18460 1.18502 1.16745 0.91677 0.93331 0.90806 0.82945 0.89199 0.90347 0.92733 0.76348 0.91516 0.93643 0.92783 0.88616 0.90235 0.89923 0.92949 0.88565 0.88606 0.90067 0.87475 0.88326 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.07 8.45 71.23 0.60 -2.46 16 2 C -0.08 -1.95 9.95 24.52 0.24 -1.70 16 3 C -0.21 -5.65 6.00 -18.70 -0.11 -5.77 16 4 C -0.11 -2.23 9.61 71.23 0.68 -1.55 16 5 C 0.54 18.14 7.43 86.57 0.64 18.78 16 6 O -0.59 -23.64 13.06 -4.06 -0.05 -23.69 16 7 N -0.68 -19.43 3.11 -466.72 -1.45 -20.88 16 8 C 0.14 3.66 4.32 86.38 0.37 4.03 16 9 C 0.14 2.64 2.90 44.97 0.13 2.77 16 10 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 11 C -0.12 -1.74 5.35 30.67 0.16 -1.58 16 12 C -0.11 -1.11 5.88 30.62 0.18 -0.93 16 13 C -0.13 -1.68 6.10 30.82 0.19 -1.49 16 14 C 0.10 1.58 6.38 86.51 0.55 2.13 16 15 N -0.60 -13.25 2.97 -794.20 -2.36 -15.60 16 16 C 0.52 16.75 7.33 87.66 0.64 17.39 16 17 O -0.52 -20.15 9.57 -3.02 -0.03 -20.18 16 18 C -0.11 -3.89 4.51 71.24 0.32 -3.57 16 19 S -0.17 -8.58 18.55 -56.49 -1.05 -9.63 16 20 C -0.53 -30.57 10.04 67.96 0.68 -29.89 16 21 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 22 C 0.05 2.90 5.50 84.86 0.47 3.37 16 23 N -0.92 -55.83 13.97 21.65 0.30 -55.53 16 24 Si 0.91 45.59 27.74 68.60 1.90 47.49 16 25 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.24 -12.38 6.74 99.48 0.67 -11.71 16 28 H 0.06 1.89 7.22 -2.38 -0.02 1.88 16 29 H 0.05 1.64 7.22 -2.39 -0.02 1.62 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.08 1.50 8.07 -2.39 -0.02 1.48 16 34 H 0.05 1.28 6.70 -2.39 -0.02 1.26 16 35 H 0.40 10.15 6.13 -92.71 -0.57 9.58 16 36 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 37 H 0.05 1.62 6.36 -2.39 -0.02 1.61 16 38 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.46 5.93 -2.39 -0.01 1.45 16 46 H 0.11 3.63 7.72 -2.39 -0.02 3.61 16 47 H 0.10 3.53 7.91 -2.40 -0.02 3.51 16 48 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -77.97 386.82 3.38 -74.59 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.35 Total: 23.89 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.76 Total: -0.46 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -3.51 Total: -92.01 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.08 Total: -43.87 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.05 Total: -9.63 kcal Total: -77.97 3.38 -74.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081897856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.010 kcal (2) G-P(sol) polarization free energy of solvation -77.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds