Wall clock time and date at job start Sat Apr 11 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47143 * 298.33983 * 3 2 1 5 5 O 1.42898 * 109.47034 * 180.02562 * 4 3 2 6 6 C 1.35711 * 117.00051 * 179.97438 * 5 4 3 7 7 C 1.39003 * 119.91198 * 179.97438 * 6 5 4 8 8 C 1.37703 * 120.08677 * 180.02562 * 7 6 5 9 9 C 1.39736 * 119.90968 * 359.97438 * 8 7 6 10 10 C 1.47605 * 120.08372 * 180.02562 * 9 8 7 11 11 O 1.21586 * 120.00457 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99979 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00153 * 180.02562 * 12 10 9 14 14 H 1.09002 * 115.51566 * 9.41493 * 13 12 10 15 15 C 1.52998 * 117.40567 * 224.06227 * 13 12 10 16 16 H 1.09003 * 119.54081 * 4.09716 * 15 13 12 17 17 C 1.57688 * 116.11377 * 161.62382 * 15 13 12 18 18 N 1.48141 * 104.67833 * 87.30580 * 17 15 13 19 19 C 1.36938 * 127.84224 * 139.77260 * 18 17 15 20 20 H 1.07999 * 119.99711 * 344.36605 * 19 18 17 21 21 C 1.38809 * 119.99983 * 164.35541 * 19 18 17 22 22 N 1.31618 * 120.00350 * 350.57816 * 21 19 18 23 23 Si 1.86804 * 119.99839 * 170.57312 * 21 19 18 24 24 H 1.48500 * 109.47101 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46987 * 120.00234 * 23 21 19 26 26 H 1.48492 * 109.47452 * 240.00311 * 23 21 19 27 27 C 1.48148 * 104.32370 * 319.77710 * 18 17 15 28 28 C 1.53004 * 117.44298 * 154.83675 * 13 12 10 29 29 H 1.08998 * 119.53485 * 355.83198 * 28 13 12 30 30 C 1.39727 * 119.82808 * 0.27626 * 9 8 7 31 31 C 1.37707 * 119.90815 * 359.46469 * 30 9 8 32 32 H 4.44652 * 5.63429 * 180.02562 * 4 1 2 33 33 H 1.08997 * 109.47269 * 178.34288 * 3 2 1 34 34 H 1.09002 * 109.47684 * 58.33715 * 3 2 1 35 35 H 1.08993 * 109.47144 * 60.00316 * 4 3 2 36 36 H 1.09002 * 109.46867 * 299.99902 * 4 3 2 37 37 H 1.07997 * 119.95682 * 359.97438 * 7 6 5 38 38 H 1.07996 * 120.04513 * 180.02562 * 8 7 6 39 39 H 0.96998 * 119.99505 * 0.02562 * 12 10 9 40 40 H 1.09004 * 110.92261 * 328.22906 * 17 15 13 41 41 H 1.09005 * 109.84105 * 205.84476 * 17 15 13 42 42 H 0.96999 * 120.00314 * 179.97438 * 22 21 19 43 43 H 1.08997 * 110.41070 * 280.80360 * 27 18 17 44 44 H 1.09004 * 110.50848 * 158.41264 * 27 18 17 45 45 H 1.07998 * 120.04943 * 179.70449 * 30 9 8 46 46 H 1.08005 * 119.95728 * 180.25049 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1562 -0.6839 1.2696 5 8 4.5852 -0.6827 1.2699 6 6 5.2016 -1.2559 2.3344 7 6 6.5899 -1.2887 2.3966 8 6 7.2191 -1.8698 3.4748 9 6 6.4600 -2.4265 4.5076 10 6 7.1305 -3.0499 5.6654 11 8 8.3447 -3.0792 5.7217 12 7 6.3967 -3.5859 6.6609 13 6 7.0620 -4.2042 7.8103 14 1 8.1398 -4.0514 7.8670 15 6 6.5127 -5.5435 8.3054 16 1 5.7017 -6.0264 7.7602 17 6 7.4778 -6.3955 9.2161 18 7 7.2275 -5.9042 10.5910 19 6 7.1441 -6.6390 11.7436 20 1 7.0133 -7.7099 11.6929 21 6 7.2280 -6.0076 12.9768 22 7 7.5712 -4.7387 13.0446 23 14 6.8535 -6.9586 14.5404 24 1 6.4952 -8.3577 14.1950 25 1 8.0506 -6.9572 15.4193 26 1 5.7178 -6.3171 15.2501 27 6 7.0877 -4.4375 10.4364 28 6 6.2872 -4.2582 9.1285 29 1 5.3083 -3.7835 9.1962 30 6 5.0648 -2.3962 4.4388 31 6 4.4431 -1.8084 3.3598 32 1 -1.0500 -0.0003 0.0001 33 1 3.0088 1.0280 -0.0297 34 1 3.0096 -0.5386 -0.8747 35 1 2.7934 -1.7112 1.2994 36 1 2.7927 -0.1446 2.1444 37 1 7.1758 -0.8586 1.5978 38 1 8.2977 -1.8946 3.5226 39 1 5.4280 -3.5623 6.6161 40 1 8.5193 -6.2333 8.9382 41 1 7.2230 -7.4525 9.1378 42 1 7.6295 -4.2974 13.9064 43 1 8.0682 -3.9693 10.3490 44 1 6.5394 -4.0152 11.2785 45 1 4.4746 -2.8296 5.2327 46 1 3.3647 -1.7809 3.3078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114271241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:16 Heat of formation + Delta-G solvation = 71.014376 kcal Electronic energy + Delta-G solvation = -27094.634671 eV Core-core repulsion = 23146.227652 eV Total energy + Delta-G solvation = -3948.407019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.78959 -39.77632 -38.44075 -37.34961 -35.10334 -34.52825 -32.80516 -31.57663 -31.10629 -30.46059 -29.59490 -27.01996 -25.76591 -25.05562 -23.82848 -22.63991 -21.55687 -20.56290 -20.22053 -19.30530 -19.16201 -18.31134 -17.56208 -16.87277 -16.82008 -16.67810 -15.85500 -15.28897 -14.84124 -14.70898 -14.65287 -14.34328 -14.32039 -14.01877 -13.84362 -13.58838 -13.22704 -12.90868 -12.74271 -12.65432 -12.52546 -12.22570 -11.59002 -11.48741 -11.37142 -11.26904 -10.98403 -10.88133 -10.85299 -10.69118 -10.35883 -10.20923 -10.13857 -9.90008 -9.73745 -9.44595 -9.21636 -8.76776 -8.65938 -8.28744 -6.87533 -5.80550 -3.14750 0.62895 0.96986 2.01853 2.25493 2.72035 2.72757 3.10873 3.37708 3.43632 3.46164 3.61153 3.89727 4.22655 4.32825 4.34851 4.39462 4.46152 4.48967 4.62455 4.66499 4.86037 4.99459 5.16290 5.16778 5.17521 5.29251 5.36747 5.39764 5.42579 5.54936 5.59847 5.73692 5.74813 5.85039 5.87801 6.04351 6.15692 6.23938 6.28738 6.51761 6.68974 6.80814 6.87515 6.88911 7.00977 7.34565 7.52766 7.57240 7.71168 8.19452 8.26768 9.10177 9.72980 10.50029 11.33982 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020780 B = 0.001663 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.127802 B =16828.150856 C =17734.380104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.195 4.195 3 C -0.008 4.008 4 C 0.062 3.938 5 O -0.311 6.311 6 C 0.153 3.847 7 C -0.159 4.159 8 C -0.019 4.019 9 C -0.167 4.167 10 C 0.562 3.438 11 O -0.537 6.537 12 N -0.694 5.694 13 C 0.094 3.906 14 H 0.133 0.867 15 C -0.185 4.185 16 H 0.106 0.894 17 C 0.158 3.842 18 N -0.593 5.593 19 C -0.227 4.227 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.914 5.914 23 Si 0.913 3.087 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.186 3.814 28 C -0.180 4.180 29 H 0.101 0.899 30 C -0.044 4.044 31 C -0.217 4.217 32 H 0.221 0.779 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.396 0.604 40 H 0.031 0.969 41 H 0.050 0.950 42 H 0.254 0.746 43 H 0.027 0.973 44 H 0.090 0.910 45 H 0.130 0.870 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 10.097 -26.823 31.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C -0.045 4.045 4 C -0.013 4.013 5 O -0.224 6.224 6 C 0.107 3.893 7 C -0.177 4.177 8 C -0.038 4.038 9 C -0.171 4.171 10 C 0.350 3.650 11 O -0.415 6.415 12 N -0.343 5.343 13 C -0.011 4.011 14 H 0.151 0.849 15 C -0.207 4.207 16 H 0.124 0.876 17 C 0.031 3.969 18 N -0.316 5.316 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.561 5.561 23 Si 0.743 3.257 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.060 3.940 28 C -0.201 4.201 29 H 0.119 0.881 30 C -0.063 4.063 31 C -0.235 4.235 32 H 0.237 0.763 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.157 0.843 38 H 0.163 0.837 39 H 0.231 0.769 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.109 0.891 45 H 0.148 0.852 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.941 10.158 -26.647 30.545 hybrid contribution -1.370 -0.443 0.899 1.697 sum -12.311 9.716 -25.749 30.149 Atomic orbital electron populations 1.25012 0.96005 1.00195 0.99265 1.22571 0.93938 1.01260 1.01745 1.18422 0.84922 1.03116 0.98031 1.22732 0.78358 1.01445 0.98755 1.85967 1.21050 1.74454 1.40966 1.19205 0.92308 0.91681 0.86103 1.20415 0.91086 1.05461 1.00759 1.21119 1.00923 0.91452 0.90279 1.19912 0.93560 1.06201 0.97383 1.18093 0.86965 0.77925 0.82025 1.90784 1.13452 1.58348 1.78875 1.45312 1.09623 1.58684 1.20639 1.21911 0.97539 0.96772 0.84927 0.84932 1.25102 1.03239 0.90463 1.01880 0.87577 1.21696 0.94434 0.95525 0.85278 1.45130 1.82406 1.02661 1.01431 1.19037 1.43113 0.91092 0.82250 0.90454 1.24903 1.01036 0.96630 0.97698 1.69909 1.52095 1.10180 1.23870 0.86040 0.77586 0.78928 0.83152 1.20351 1.21661 1.21642 1.21057 0.96059 0.85515 0.91406 1.24640 1.01300 1.01128 0.93049 0.88140 1.21112 0.93380 0.94994 0.96795 1.21165 1.00315 1.05918 0.96135 0.76254 0.88243 0.88254 0.91184 0.91173 0.84343 0.83678 0.76873 0.95099 0.93120 0.93566 0.95530 0.89139 0.85236 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.98 19.25 29.55 0.57 -0.41 16 2 C -0.20 -1.17 13.34 -37.13 -0.50 -1.67 16 3 C -0.01 -0.04 6.07 -29.52 -0.18 -0.22 16 4 C 0.06 0.34 4.69 37.16 0.17 0.52 16 5 O -0.31 -2.41 10.12 -18.84 -0.19 -2.60 16 6 C 0.15 1.34 6.70 -39.02 -0.26 1.08 16 7 C -0.16 -1.43 9.97 -39.49 -0.39 -1.82 16 8 C -0.02 -0.20 9.58 -39.22 -0.38 -0.58 16 9 C -0.17 -1.93 5.87 -104.96 -0.62 -2.55 16 10 C 0.56 8.30 7.76 -12.44 -0.10 8.20 16 11 O -0.54 -9.92 15.90 5.29 0.08 -9.84 16 12 N -0.69 -9.60 5.51 -54.82 -0.30 -9.90 16 13 C 0.09 1.61 5.92 -67.93 -0.40 1.21 16 14 H 0.13 2.58 7.40 -51.93 -0.38 2.20 16 15 C -0.19 -3.30 7.34 -87.39 -0.64 -3.94 16 16 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 17 C 0.16 3.35 7.09 -0.58 0.00 3.35 16 18 N -0.59 -15.23 3.38 -166.73 -0.56 -15.80 16 19 C -0.23 -6.31 10.35 -15.06 -0.16 -6.47 16 20 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 21 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 22 N -0.91 -26.78 10.88 55.49 0.60 -26.18 16 23 Si 0.91 21.87 29.56 -169.99 -5.03 16.84 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.19 4.47 5.69 -2.41 -0.01 4.46 16 28 C -0.18 -3.38 6.98 -89.22 -0.62 -4.01 16 29 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 30 C -0.04 -0.40 9.53 -39.22 -0.37 -0.77 16 31 C -0.22 -1.75 9.01 -39.50 -0.36 -2.11 16 32 H 0.22 0.45 7.80 -54.09 -0.42 0.03 16 33 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.35 7.65 -51.93 -0.40 -0.05 16 36 H 0.07 0.35 7.65 -51.93 -0.40 -0.04 16 37 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.15 1.52 7.64 -52.49 -0.40 1.12 16 39 H 0.40 4.27 6.85 -40.82 -0.28 3.99 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 2.41 6.53 -51.93 -0.34 2.08 16 45 H 0.13 0.91 6.39 -52.49 -0.34 0.57 16 46 H 0.13 0.78 6.28 -52.48 -0.33 0.46 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -33.69 392.66 -10.03 -43.72 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.21 Total: 3.81 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -4.34 Total: -5.98 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.26 Total: -51.87 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.11 Total: -12.44 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.69 -10.03 -43.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114271241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.735 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds