Wall clock time and date at job start Sat Apr 11 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47143 * 298.33983 * 3 2 1 5 5 O 1.42898 * 109.47034 * 180.02562 * 4 3 2 6 6 C 1.35711 * 117.00051 * 179.97438 * 5 4 3 7 7 C 1.39003 * 119.91198 * 179.97438 * 6 5 4 8 8 C 1.37703 * 120.08677 * 180.02562 * 7 6 5 9 9 C 1.39736 * 119.90968 * 359.97438 * 8 7 6 10 10 C 1.47605 * 120.08372 * 180.02562 * 9 8 7 11 11 O 1.21586 * 120.00457 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99979 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00153 * 180.02562 * 12 10 9 14 14 H 1.09002 * 115.51566 * 9.41493 * 13 12 10 15 15 C 1.52998 * 117.40567 * 224.06227 * 13 12 10 16 16 H 1.09003 * 119.54081 * 4.09716 * 15 13 12 17 17 C 1.57688 * 116.11377 * 161.62382 * 15 13 12 18 18 N 1.48141 * 104.67833 * 87.30580 * 17 15 13 19 19 C 1.36938 * 127.84224 * 139.77260 * 18 17 15 20 20 H 1.07999 * 119.99711 * 344.36605 * 19 18 17 21 21 C 1.38809 * 119.99983 * 164.35541 * 19 18 17 22 22 N 1.31618 * 120.00350 * 350.57816 * 21 19 18 23 23 Si 1.86804 * 119.99839 * 170.57312 * 21 19 18 24 24 H 1.48500 * 109.47101 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46987 * 120.00234 * 23 21 19 26 26 H 1.48492 * 109.47452 * 240.00311 * 23 21 19 27 27 C 1.48148 * 104.32370 * 319.77710 * 18 17 15 28 28 C 1.53004 * 117.44298 * 154.83675 * 13 12 10 29 29 H 1.08998 * 119.53485 * 355.83198 * 28 13 12 30 30 C 1.39727 * 119.82808 * 0.27626 * 9 8 7 31 31 C 1.37707 * 119.90815 * 359.46469 * 30 9 8 32 32 H 4.44652 * 5.63429 * 180.02562 * 4 1 2 33 33 H 1.08997 * 109.47269 * 178.34288 * 3 2 1 34 34 H 1.09002 * 109.47684 * 58.33715 * 3 2 1 35 35 H 1.08993 * 109.47144 * 60.00316 * 4 3 2 36 36 H 1.09002 * 109.46867 * 299.99902 * 4 3 2 37 37 H 1.07997 * 119.95682 * 359.97438 * 7 6 5 38 38 H 1.07996 * 120.04513 * 180.02562 * 8 7 6 39 39 H 0.96998 * 119.99505 * 0.02562 * 12 10 9 40 40 H 1.09004 * 110.92261 * 328.22906 * 17 15 13 41 41 H 1.09005 * 109.84105 * 205.84476 * 17 15 13 42 42 H 0.96999 * 120.00314 * 179.97438 * 22 21 19 43 43 H 1.08997 * 110.41070 * 280.80360 * 27 18 17 44 44 H 1.09004 * 110.50848 * 158.41264 * 27 18 17 45 45 H 1.07998 * 120.04943 * 179.70449 * 30 9 8 46 46 H 1.08005 * 119.95728 * 180.25049 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1562 -0.6839 1.2696 5 8 4.5852 -0.6827 1.2699 6 6 5.2016 -1.2559 2.3344 7 6 6.5899 -1.2887 2.3966 8 6 7.2191 -1.8698 3.4748 9 6 6.4600 -2.4265 4.5076 10 6 7.1305 -3.0499 5.6654 11 8 8.3447 -3.0792 5.7217 12 7 6.3967 -3.5859 6.6609 13 6 7.0620 -4.2042 7.8103 14 1 8.1398 -4.0514 7.8670 15 6 6.5127 -5.5435 8.3054 16 1 5.7017 -6.0264 7.7602 17 6 7.4778 -6.3955 9.2161 18 7 7.2275 -5.9042 10.5910 19 6 7.1441 -6.6390 11.7436 20 1 7.0133 -7.7099 11.6929 21 6 7.2280 -6.0076 12.9768 22 7 7.5712 -4.7387 13.0446 23 14 6.8535 -6.9586 14.5404 24 1 6.4952 -8.3577 14.1950 25 1 8.0506 -6.9572 15.4193 26 1 5.7178 -6.3171 15.2501 27 6 7.0877 -4.4375 10.4364 28 6 6.2872 -4.2582 9.1285 29 1 5.3083 -3.7835 9.1962 30 6 5.0648 -2.3962 4.4388 31 6 4.4431 -1.8084 3.3598 32 1 -1.0500 -0.0003 0.0001 33 1 3.0088 1.0280 -0.0297 34 1 3.0096 -0.5386 -0.8747 35 1 2.7934 -1.7112 1.2994 36 1 2.7927 -0.1446 2.1444 37 1 7.1758 -0.8586 1.5978 38 1 8.2977 -1.8946 3.5226 39 1 5.4280 -3.5623 6.6161 40 1 8.5193 -6.2333 8.9382 41 1 7.2230 -7.4525 9.1378 42 1 7.6295 -4.2974 13.9064 43 1 8.0682 -3.9693 10.3490 44 1 6.5394 -4.0152 11.2785 45 1 4.4746 -2.8296 5.2327 46 1 3.3647 -1.7809 3.3078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114271241.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:15 Heat of formation + Delta-G solvation = 51.127178 kcal Electronic energy + Delta-G solvation = -27095.497044 eV Core-core repulsion = 23146.227652 eV Total energy + Delta-G solvation = -3949.269393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59869 -40.85793 -39.81134 -38.20298 -36.13488 -35.50567 -34.42467 -32.56586 -31.95307 -31.61031 -30.42924 -28.80276 -27.60963 -25.70021 -24.72915 -23.63499 -22.79919 -21.98919 -21.47260 -20.90374 -19.69610 -18.96541 -18.79677 -18.38086 -17.79758 -17.28391 -16.89410 -16.62680 -16.17578 -15.97088 -15.58104 -15.41118 -14.96641 -14.90757 -14.82443 -14.64187 -14.52857 -14.40635 -13.75585 -13.65484 -13.36796 -13.32264 -13.13498 -13.11547 -12.86769 -12.74403 -12.09663 -11.99053 -11.97646 -11.89929 -11.88034 -11.69042 -11.26178 -11.15165 -11.04960 -10.86374 -10.71022 -10.13212 -9.79356 -9.29559 -8.93231 -7.92366 -5.29321 -0.17311 0.29306 1.47523 1.47951 1.59396 1.59434 1.73447 1.88130 1.91883 2.23157 2.48424 2.71409 2.94234 3.28259 3.55389 3.57770 3.66015 3.69071 3.82009 3.83386 3.94581 3.97879 4.01454 4.07422 4.16618 4.29403 4.30704 4.37056 4.50920 4.54898 4.79872 4.83660 4.84703 4.87427 4.93393 4.97957 5.07443 5.12816 5.19505 5.26695 5.32417 5.41205 5.44631 5.52191 5.59818 5.63997 6.15744 6.27540 6.48459 6.65240 6.99667 7.15806 7.66531 8.45140 9.21927 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020780 B = 0.001663 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.127802 B =16828.150856 C =17734.380104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.223 4.223 3 C -0.007 4.007 4 C 0.059 3.941 5 O -0.316 6.316 6 C 0.156 3.844 7 C -0.162 4.162 8 C -0.028 4.028 9 C -0.188 4.188 10 C 0.562 3.438 11 O -0.584 6.584 12 N -0.679 5.679 13 C 0.112 3.888 14 H 0.105 0.895 15 C -0.163 4.163 16 H 0.142 0.858 17 C 0.149 3.851 18 N -0.617 5.617 19 C -0.241 4.241 20 H 0.084 0.916 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.982 3.018 24 H -0.263 1.263 25 H -0.293 1.293 26 H -0.289 1.289 27 C 0.189 3.811 28 C -0.178 4.178 29 H 0.127 0.873 30 C -0.036 4.036 31 C -0.213 4.213 32 H 0.244 0.756 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.153 0.847 38 H 0.136 0.864 39 H 0.416 0.584 40 H 0.021 0.979 41 H 0.063 0.937 42 H 0.250 0.750 43 H -0.005 1.005 44 H 0.059 0.941 45 H 0.154 0.846 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.970 9.752 -28.693 33.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.223 4.223 3 C -0.043 4.043 4 C -0.016 4.016 5 O -0.229 6.229 6 C 0.109 3.891 7 C -0.181 4.181 8 C -0.047 4.047 9 C -0.192 4.192 10 C 0.352 3.648 11 O -0.465 6.465 12 N -0.329 5.329 13 C 0.005 3.995 14 H 0.122 0.878 15 C -0.185 4.185 16 H 0.160 0.840 17 C 0.023 3.977 18 N -0.340 5.340 19 C -0.369 4.369 20 H 0.101 0.899 21 C -0.256 4.256 22 N -0.596 5.596 23 Si 0.810 3.190 24 H -0.187 1.187 25 H -0.220 1.220 26 H -0.216 1.216 27 C 0.063 3.937 28 C -0.199 4.199 29 H 0.145 0.855 30 C -0.055 4.055 31 C -0.232 4.232 32 H 0.260 0.740 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.171 0.829 38 H 0.153 0.847 39 H 0.254 0.746 40 H 0.039 0.961 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.013 0.987 44 H 0.078 0.922 45 H 0.171 0.829 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.038 9.806 -28.567 33.306 hybrid contribution -0.424 -0.276 1.336 1.428 sum -14.461 9.530 -27.231 32.272 Atomic orbital electron populations 1.25761 0.96930 0.99395 0.98399 1.22984 0.94676 1.02076 1.02598 1.18421 0.84502 1.03449 0.97934 1.22897 0.77008 1.02204 0.99457 1.85968 1.22420 1.74007 1.40507 1.19351 0.92336 0.90969 0.86404 1.20529 0.91720 1.05228 1.00584 1.21119 1.00691 0.92042 0.90866 1.19707 0.94739 1.08115 0.96621 1.18625 0.86494 0.77110 0.82588 1.90763 1.15628 1.60189 1.79910 1.45070 1.10505 1.58097 1.19254 1.21433 0.96279 0.96541 0.85244 0.87762 1.25018 1.02814 0.89648 1.00973 0.83991 1.21831 0.94913 0.96924 0.84068 1.45425 1.82776 1.03256 1.02587 1.19439 1.42375 0.91720 0.83376 0.89858 1.25773 1.01391 0.97604 1.00863 1.70109 1.53524 1.11801 1.24182 0.84964 0.76888 0.78270 0.78878 1.18722 1.22040 1.21587 1.20788 0.94830 0.84848 0.93203 1.24322 1.01741 1.02830 0.91048 0.85486 1.21326 0.92207 0.94325 0.97616 1.21443 1.01631 1.04856 0.95258 0.73956 0.87790 0.87729 0.90335 0.90433 0.82926 0.84650 0.74580 0.96128 0.91863 0.94075 0.98727 0.92244 0.82873 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 19.25 74.32 1.43 -0.13 16 2 C -0.22 -2.25 13.34 31.12 0.42 -1.84 16 3 C -0.01 -0.05 6.07 28.79 0.17 0.13 16 4 C 0.06 0.49 4.69 71.98 0.34 0.82 16 5 O -0.32 -4.09 10.12 -90.32 -0.91 -5.01 16 6 C 0.16 2.33 6.70 22.63 0.15 2.48 16 7 C -0.16 -2.68 9.97 22.33 0.22 -2.46 16 8 C -0.03 -0.58 9.58 22.51 0.22 -0.37 16 9 C -0.19 -4.12 5.87 -20.08 -0.12 -4.23 16 10 C 0.56 16.27 7.76 86.72 0.67 16.94 16 11 O -0.58 -22.20 15.90 -3.99 -0.06 -22.26 16 12 N -0.68 -17.54 5.51 -445.63 -2.46 -20.00 16 13 C 0.11 3.76 5.92 44.99 0.27 4.02 16 14 H 0.10 4.20 7.40 -2.39 -0.02 4.18 16 15 C -0.16 -5.51 7.34 -8.70 -0.06 -5.57 16 16 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 17 C 0.15 6.29 7.09 87.72 0.62 6.91 16 18 N -0.62 -32.25 3.38 -681.42 -2.30 -34.55 16 19 C -0.24 -13.54 10.35 84.03 0.87 -12.67 16 20 H 0.08 4.46 7.85 -2.91 -0.02 4.44 16 21 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 22 N -0.95 -57.48 10.88 21.65 0.24 -57.25 16 23 Si 0.98 45.46 29.56 68.60 2.03 47.49 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 27 C 0.19 9.45 5.69 86.53 0.49 9.95 16 28 C -0.18 -6.57 6.98 -9.89 -0.07 -6.64 16 29 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 30 C -0.04 -0.55 9.53 22.50 0.21 -0.33 16 31 C -0.21 -2.73 9.01 22.33 0.20 -2.53 16 32 H 0.24 0.37 7.80 -4.42 -0.03 0.34 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.53 7.65 -2.39 -0.02 0.51 16 36 H 0.08 0.54 7.65 -2.39 -0.02 0.52 16 37 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.14 2.98 7.64 -2.91 -0.02 2.95 16 39 H 0.42 7.51 6.85 -92.71 -0.63 6.88 16 40 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 42 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 43 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.06 3.31 6.53 -2.38 -0.02 3.30 16 45 H 0.15 1.49 6.39 -2.91 -0.02 1.47 16 46 H 0.16 1.17 6.28 -2.91 -0.02 1.16 16 Total: -1.00 -76.01 392.66 3.39 -72.61 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.37 Total: 17.57 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 6.50 Total: 1.39 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.52 Total: -111.80 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.98 Total: -27.27 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -76.01 3.39 -72.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114271241.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.741 kcal (2) G-P(sol) polarization free energy of solvation -76.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds