Wall clock time and date at job start Sat Apr 11 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47203 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47203 * 179.97438 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47203 * 10.45646 * 4 3 2 6 6 C 1.46507 * 119.99630 * 269.99777 * 5 4 3 7 7 C 1.34764 * 120.00281 * 89.99899 * 5 4 3 8 8 O 1.21350 * 120.00141 * 5.03394 * 7 5 4 9 9 C 1.49451 * 120.00137 * 185.02899 * 7 5 4 10 10 O 1.21344 * 120.00613 * 274.14237 * 9 7 5 11 11 N 1.34783 * 119.99738 * 94.13776 * 9 7 5 12 12 C 1.47249 * 121.35667 * 175.29086 * 11 9 7 13 13 C 1.52791 * 107.83229 * 115.89816 * 12 11 9 14 14 C 1.50568 * 110.84503 * 47.35509 * 13 12 11 15 15 C 1.41477 * 117.58516 * 160.32325 * 14 13 12 16 16 C 1.41393 * 119.97906 * 359.01276 * 15 14 13 17 17 H 1.08002 * 120.00279 * 33.02031 * 16 15 14 18 18 C 1.39949 * 120.00043 * 213.02010 * 16 15 14 19 19 N 1.30825 * 119.99653 * 6.77054 * 18 16 15 20 20 Si 1.86800 * 120.00223 * 186.77215 * 18 16 15 21 21 H 1.48503 * 109.47128 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47294 * 119.99808 * 20 18 16 23 23 H 1.48502 * 109.47114 * 240.00052 * 20 18 16 24 24 C 1.40405 * 120.05389 * 179.04950 * 15 14 13 25 25 C 1.37639 * 119.54481 * 0.27012 * 24 15 14 26 26 C 1.38330 * 119.98514 * 0.17041 * 25 24 15 27 27 C 1.36987 * 123.05292 * 340.09951 * 14 13 12 28 28 C 1.46672 * 121.35510 * 355.31989 * 11 9 7 29 29 H 1.09001 * 109.47389 * 349.54375 * 1 2 3 30 30 H 1.08995 * 109.47064 * 109.54787 * 1 2 3 31 31 H 1.08998 * 109.46885 * 229.54190 * 1 2 3 32 32 H 1.08996 * 109.46572 * 250.45402 * 4 3 2 33 33 H 1.09003 * 109.46488 * 130.45627 * 4 3 2 34 34 H 1.09001 * 109.46667 * 264.86802 * 6 5 4 35 35 H 1.09000 * 109.47257 * 24.86363 * 6 5 4 36 36 H 1.09000 * 109.46969 * 144.86408 * 6 5 4 37 37 H 1.09002 * 109.78238 * 356.31477 * 12 11 9 38 38 H 1.08997 * 109.83400 * 235.51051 * 12 11 9 39 39 H 1.09002 * 109.19118 * 167.69139 * 13 12 11 40 40 H 1.09005 * 109.19749 * 287.01004 * 13 12 11 41 41 H 0.97000 * 119.99437 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.22744 * 180.29011 * 24 15 14 43 43 H 1.08001 * 120.00941 * 180.14811 * 25 24 15 44 44 H 1.07999 * 119.47550 * 179.87962 * 26 25 24 45 45 H 1.09000 * 109.42876 * 344.33471 * 28 11 9 46 46 H 1.08998 * 109.42823 * 104.18711 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0018 0.0000 5 7 4.6076 -1.3560 -0.2507 6 6 4.8527 -2.2651 0.8718 7 6 4.8326 -1.7688 -1.5137 8 8 4.7178 -0.9890 -2.4364 9 6 5.2237 -3.1868 -1.7779 10 8 6.3899 -3.5163 -1.7161 11 7 4.2809 -4.0998 -2.0848 12 6 4.6410 -5.4799 -2.4507 13 6 4.0713 -6.4112 -1.3817 14 6 2.6346 -6.0714 -1.0857 15 6 1.8419 -7.0636 -0.4621 16 6 2.4002 -8.3268 -0.1594 17 1 3.4427 -8.4056 0.1116 18 6 1.6019 -9.4752 -0.2108 19 7 0.3775 -9.4007 -0.6655 20 14 2.2846 -11.1141 0.3698 21 1 3.6834 -10.9313 0.8337 22 1 1.4546 -11.6277 1.4889 23 1 2.2589 -12.0865 -0.7523 24 6 0.5009 -6.7951 -0.1443 25 6 -0.0355 -5.5646 -0.4487 26 6 0.7448 -4.6040 -1.0667 27 6 2.0764 -4.8575 -1.3877 28 6 2.8544 -3.7589 -2.0686 29 1 -0.3634 1.0106 0.1865 30 1 -0.3633 -0.3438 -0.9684 31 1 -0.3633 -0.6668 0.7819 32 1 4.4810 0.3460 0.9684 33 1 4.4807 0.6690 -0.7820 34 1 5.9047 -2.2196 1.1531 35 1 4.2364 -1.9688 1.7206 36 1 4.5991 -3.2833 0.5766 37 1 5.7258 -5.5806 -2.4878 38 1 4.2140 -5.7284 -3.4222 39 1 4.1307 -7.4407 -1.7348 40 1 4.6588 -6.3110 -0.4690 41 1 -0.1759 -10.1966 -0.7008 42 1 -0.1055 -7.5488 0.3359 43 1 -1.0655 -5.3492 -0.2055 44 1 0.3150 -3.6419 -1.3035 45 1 2.7112 -2.8239 -1.5270 46 1 2.4978 -3.6427 -3.0920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118843281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:19 Heat of formation + Delta-G solvation = 6.273100 kcal Electronic energy + Delta-G solvation = -29890.284393 eV Core-core repulsion = 25939.069981 eV Total energy + Delta-G solvation = -3951.214411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86989 -39.07010 -37.96511 -36.19465 -35.68211 -33.98234 -33.72449 -32.14448 -30.33071 -30.14886 -29.01454 -27.16904 -26.72813 -25.37147 -25.08488 -23.70198 -22.12006 -20.68220 -19.81705 -18.56288 -17.49110 -17.33053 -17.22505 -16.79608 -16.15932 -15.49139 -15.25799 -15.03435 -14.80447 -14.40906 -14.06579 -13.84839 -13.63531 -13.58917 -13.55543 -13.36417 -13.26179 -13.06135 -12.95932 -12.63322 -12.52665 -12.42251 -11.93761 -11.67358 -11.52347 -11.37875 -11.24962 -11.09267 -10.96615 -10.52514 -10.29110 -10.20425 -9.83360 -9.81157 -9.42621 -9.42314 -9.27117 -9.12088 -8.50588 -7.40403 -7.33261 -6.77124 -4.48918 1.88943 2.15793 2.55334 2.64168 2.67141 2.73721 2.89065 3.03918 3.08011 3.10439 3.45568 3.88635 4.13932 4.20508 4.54245 4.95344 5.01404 5.21107 5.23985 5.38932 5.39944 5.45459 5.51139 5.54702 5.55867 5.62547 5.65498 5.74605 5.78107 5.82462 5.85607 6.10185 6.16217 6.25935 6.29328 6.58078 6.69032 6.76065 6.89575 7.00801 7.06832 7.22568 7.36992 7.49346 7.55121 7.69180 7.73013 7.89377 7.94333 7.96393 8.14954 8.52101 8.79797 8.84490 10.17436 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.003708 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.825393 B = 7549.631889 C = 8867.395643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.154 4.154 3 C -0.220 4.220 4 C 0.232 3.768 5 N -0.600 5.600 6 C 0.074 3.926 7 C 0.524 3.476 8 O -0.511 6.511 9 C 0.519 3.481 10 O -0.523 6.523 11 N -0.583 5.583 12 C 0.111 3.889 13 C -0.068 4.068 14 C -0.166 4.166 15 C 0.112 3.888 16 C -0.463 4.463 17 H 0.079 0.921 18 C 0.074 3.926 19 N -0.804 5.804 20 Si 0.908 3.092 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.275 1.275 24 C -0.151 4.151 25 C -0.106 4.106 26 C -0.223 4.223 27 C -0.081 4.081 28 C 0.156 3.844 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.279 0.721 42 H 0.118 0.882 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.047 11.843 3.057 12.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.155 4.155 3 C -0.221 4.221 4 C 0.111 3.889 5 N -0.335 5.335 6 C -0.069 4.069 7 C 0.306 3.694 8 O -0.385 6.385 9 C 0.301 3.699 10 O -0.399 6.399 11 N -0.316 5.316 12 C -0.010 4.010 13 C -0.106 4.106 14 C -0.168 4.168 15 C 0.110 3.890 16 C -0.493 4.493 17 H 0.097 0.903 18 C -0.142 4.142 19 N -0.430 5.430 20 Si 0.733 3.267 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.170 4.170 25 C -0.124 4.124 26 C -0.243 4.243 27 C -0.082 4.082 28 C 0.034 3.966 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.136 0.864 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.452 11.916 2.531 12.427 hybrid contribution -0.133 -0.852 0.243 0.896 sum 2.319 11.064 2.774 11.640 Atomic orbital electron populations 1.18935 0.84523 1.02927 1.03671 1.22507 0.93904 0.98176 1.00936 1.22584 0.93861 1.03537 1.02101 1.18241 0.83569 0.83542 1.03585 1.47861 1.64733 1.14578 1.06326 1.21980 1.02019 0.94057 0.88830 1.20429 0.76515 0.89196 0.83221 1.90778 1.49920 1.54574 1.43189 1.19927 0.86221 0.85412 0.78387 1.90770 1.17656 1.79141 1.52362 1.48113 1.06729 1.11291 1.65512 1.21890 1.01308 0.78872 0.98927 1.20443 0.93841 0.99060 0.97232 1.19301 0.95466 0.94946 1.07062 1.17609 0.91535 0.91625 0.88245 1.19566 0.97365 0.90835 1.41528 0.90324 1.25857 0.94400 1.01208 0.92743 1.69782 1.07838 1.31135 1.34270 0.86248 0.80212 0.81124 0.79082 1.18458 1.19884 1.19993 1.21297 0.96944 0.95250 1.03512 1.20602 0.97454 0.94539 0.99815 1.20163 0.93876 0.99140 1.11111 1.18972 0.94170 0.93651 1.01411 1.20537 0.78156 0.97357 1.00559 0.90157 0.89849 0.89762 0.87682 0.87362 0.91358 0.89904 0.90470 0.89173 0.90650 0.89576 0.92390 0.91038 0.86382 0.89204 0.89504 0.90605 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.41 10.32 34.37 0.35 -0.06 16 2 C -0.15 -1.93 14.13 -37.12 -0.52 -2.46 16 3 C -0.22 -2.83 13.68 -37.12 -0.51 -3.34 16 4 C 0.23 2.57 5.90 -6.83 -0.04 2.53 16 5 N -0.60 -8.01 2.83 -185.44 -0.53 -8.54 16 6 C 0.07 0.85 10.23 59.85 0.61 1.46 16 7 C 0.52 8.68 5.60 -11.59 -0.06 8.62 16 8 O -0.51 -9.51 16.65 5.50 0.09 -9.42 16 9 C 0.52 9.21 5.72 -11.58 -0.07 9.14 16 10 O -0.52 -10.20 16.60 5.50 0.09 -10.11 16 11 N -0.58 -10.20 2.93 -174.86 -0.51 -10.71 16 12 C 0.11 1.89 6.44 -3.74 -0.02 1.86 16 13 C -0.07 -1.30 4.98 -28.05 -0.14 -1.44 16 14 C -0.17 -3.63 5.82 -103.91 -0.60 -4.23 16 15 C 0.11 2.73 5.53 -106.65 -0.59 2.14 16 16 C -0.46 -11.28 7.84 -37.74 -0.30 -11.58 16 17 H 0.08 1.85 7.12 -52.49 -0.37 1.48 16 18 C 0.07 1.76 5.29 -17.34 -0.09 1.67 16 19 N -0.80 -19.82 10.92 55.55 0.61 -19.22 16 20 Si 0.91 17.92 29.56 -169.99 -5.03 12.90 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 C -0.15 -3.64 8.60 -38.98 -0.34 -3.98 16 25 C -0.11 -2.28 10.03 -39.77 -0.40 -2.68 16 26 C -0.22 -4.54 9.63 -39.15 -0.38 -4.91 16 27 C -0.08 -1.65 5.81 -104.61 -0.61 -2.26 16 28 C 0.16 2.74 6.04 -5.03 -0.03 2.71 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.11 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.11 1.21 7.36 -51.93 -0.38 0.83 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.78 8.03 -51.93 -0.42 0.37 16 36 H 0.08 1.07 6.99 -51.93 -0.36 0.70 16 37 H 0.09 1.47 7.10 -51.93 -0.37 1.10 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.09 1.67 7.15 -51.93 -0.37 1.30 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.28 6.31 8.30 -40.82 -0.34 5.98 16 42 H 0.12 2.99 6.40 -52.49 -0.34 2.65 16 43 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.09 1.57 8.05 -52.49 -0.42 1.15 16 45 H 0.08 1.30 6.62 -51.93 -0.34 0.96 16 46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 388.65 15.07 5.86 5.86 Total: -1.00 -29.69 388.65 -9.46 -39.15 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.31 Total: 6.87 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -3.73 Total: -6.78 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.43 Total: -38.46 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.18 Total: -19.52 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.69 -9.46 -39.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118843281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.422 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds