Wall clock time and date at job start Sat Apr 11 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47203 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47203 * 179.97438 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47203 * 10.45646 * 4 3 2 6 6 C 1.46507 * 119.99630 * 269.99777 * 5 4 3 7 7 C 1.34764 * 120.00281 * 89.99899 * 5 4 3 8 8 O 1.21350 * 120.00141 * 5.03394 * 7 5 4 9 9 C 1.49451 * 120.00137 * 185.02899 * 7 5 4 10 10 O 1.21344 * 120.00613 * 274.14237 * 9 7 5 11 11 N 1.34783 * 119.99738 * 94.13776 * 9 7 5 12 12 C 1.47249 * 121.35667 * 175.29086 * 11 9 7 13 13 C 1.52791 * 107.83229 * 115.89816 * 12 11 9 14 14 C 1.50568 * 110.84503 * 47.35509 * 13 12 11 15 15 C 1.41477 * 117.58516 * 160.32325 * 14 13 12 16 16 C 1.41393 * 119.97906 * 359.01276 * 15 14 13 17 17 H 1.08002 * 120.00279 * 33.02031 * 16 15 14 18 18 C 1.39949 * 120.00043 * 213.02010 * 16 15 14 19 19 N 1.30825 * 119.99653 * 6.77054 * 18 16 15 20 20 Si 1.86800 * 120.00223 * 186.77215 * 18 16 15 21 21 H 1.48503 * 109.47128 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47294 * 119.99808 * 20 18 16 23 23 H 1.48502 * 109.47114 * 240.00052 * 20 18 16 24 24 C 1.40405 * 120.05389 * 179.04950 * 15 14 13 25 25 C 1.37639 * 119.54481 * 0.27012 * 24 15 14 26 26 C 1.38330 * 119.98514 * 0.17041 * 25 24 15 27 27 C 1.36987 * 123.05292 * 340.09951 * 14 13 12 28 28 C 1.46672 * 121.35510 * 355.31989 * 11 9 7 29 29 H 1.09001 * 109.47389 * 349.54375 * 1 2 3 30 30 H 1.08995 * 109.47064 * 109.54787 * 1 2 3 31 31 H 1.08998 * 109.46885 * 229.54190 * 1 2 3 32 32 H 1.08996 * 109.46572 * 250.45402 * 4 3 2 33 33 H 1.09003 * 109.46488 * 130.45627 * 4 3 2 34 34 H 1.09001 * 109.46667 * 264.86802 * 6 5 4 35 35 H 1.09000 * 109.47257 * 24.86363 * 6 5 4 36 36 H 1.09000 * 109.46969 * 144.86408 * 6 5 4 37 37 H 1.09002 * 109.78238 * 356.31477 * 12 11 9 38 38 H 1.08997 * 109.83400 * 235.51051 * 12 11 9 39 39 H 1.09002 * 109.19118 * 167.69139 * 13 12 11 40 40 H 1.09005 * 109.19749 * 287.01004 * 13 12 11 41 41 H 0.97000 * 119.99437 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.22744 * 180.29011 * 24 15 14 43 43 H 1.08001 * 120.00941 * 180.14811 * 25 24 15 44 44 H 1.07999 * 119.47550 * 179.87962 * 26 25 24 45 45 H 1.09000 * 109.42876 * 344.33471 * 28 11 9 46 46 H 1.08998 * 109.42823 * 104.18711 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1181 0.0018 0.0000 5 7 4.6076 -1.3560 -0.2507 6 6 4.8527 -2.2651 0.8718 7 6 4.8326 -1.7688 -1.5137 8 8 4.7178 -0.9890 -2.4364 9 6 5.2237 -3.1868 -1.7779 10 8 6.3899 -3.5163 -1.7161 11 7 4.2809 -4.0998 -2.0848 12 6 4.6410 -5.4799 -2.4507 13 6 4.0713 -6.4112 -1.3817 14 6 2.6346 -6.0714 -1.0857 15 6 1.8419 -7.0636 -0.4621 16 6 2.4002 -8.3268 -0.1594 17 1 3.4427 -8.4056 0.1116 18 6 1.6019 -9.4752 -0.2108 19 7 0.3775 -9.4007 -0.6655 20 14 2.2846 -11.1141 0.3698 21 1 3.6834 -10.9313 0.8337 22 1 1.4546 -11.6277 1.4889 23 1 2.2589 -12.0865 -0.7523 24 6 0.5009 -6.7951 -0.1443 25 6 -0.0355 -5.5646 -0.4487 26 6 0.7448 -4.6040 -1.0667 27 6 2.0764 -4.8575 -1.3877 28 6 2.8544 -3.7589 -2.0686 29 1 -0.3634 1.0106 0.1865 30 1 -0.3633 -0.3438 -0.9684 31 1 -0.3633 -0.6668 0.7819 32 1 4.4810 0.3460 0.9684 33 1 4.4807 0.6690 -0.7820 34 1 5.9047 -2.2196 1.1531 35 1 4.2364 -1.9688 1.7206 36 1 4.5991 -3.2833 0.5766 37 1 5.7258 -5.5806 -2.4878 38 1 4.2140 -5.7284 -3.4222 39 1 4.1307 -7.4407 -1.7348 40 1 4.6588 -6.3110 -0.4690 41 1 -0.1759 -10.1966 -0.7008 42 1 -0.1055 -7.5488 0.3359 43 1 -1.0655 -5.3492 -0.2055 44 1 0.3150 -3.6419 -1.3035 45 1 2.7112 -2.8239 -1.5270 46 1 2.4978 -3.6427 -3.0920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118843281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:19 Heat of formation + Delta-G solvation = -8.405347 kcal Electronic energy + Delta-G solvation = -29890.920898 eV Core-core repulsion = 25939.069981 eV Total energy + Delta-G solvation = -3951.850917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.19896 -40.50243 -39.47491 -37.31210 -37.23452 -35.45168 -34.88078 -33.72344 -31.93108 -31.12406 -30.56507 -28.12739 -27.88488 -27.03481 -26.55882 -25.08348 -23.52016 -22.39920 -21.28829 -19.85819 -18.98111 -18.78507 -18.40486 -18.10776 -17.44957 -17.08837 -16.58676 -16.41498 -16.17946 -15.76451 -15.35803 -15.17726 -15.10374 -14.76079 -14.67786 -14.54001 -14.28153 -14.24652 -14.08134 -14.01470 -13.79338 -13.56882 -13.34352 -13.23604 -13.09813 -12.86965 -12.74641 -12.70048 -12.63619 -12.12047 -11.93200 -11.50355 -11.19300 -11.13101 -11.01941 -10.67951 -10.66483 -10.20387 -9.96782 -9.10972 -9.09047 -8.53153 -6.32879 0.69521 0.85910 0.98116 1.01848 1.31655 1.41262 1.50189 1.53850 1.69509 1.74026 2.23569 2.31351 2.78566 2.95050 3.31572 3.60979 3.79888 4.01216 4.06497 4.12355 4.23299 4.25652 4.39108 4.39542 4.41978 4.54845 4.61008 4.68734 4.74824 4.75255 4.78664 4.80957 4.82891 5.00410 5.07997 5.10879 5.12100 5.17135 5.27895 5.33247 5.49798 5.76268 5.77678 5.88157 6.06725 6.16611 6.17397 6.39398 6.47568 6.55002 6.65663 6.73548 6.99990 7.06477 8.43127 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.003708 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.825393 B = 7549.631889 C = 8867.395643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.166 4.166 3 C -0.245 4.245 4 C 0.229 3.771 5 N -0.590 5.590 6 C 0.071 3.929 7 C 0.522 3.478 8 O -0.537 6.537 9 C 0.519 3.481 10 O -0.544 6.544 11 N -0.584 5.584 12 C 0.116 3.884 13 C -0.061 4.061 14 C -0.175 4.175 15 C 0.082 3.918 16 C -0.489 4.489 17 H 0.077 0.923 18 C 0.035 3.965 19 N -0.838 5.838 20 Si 0.975 3.025 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.271 1.271 24 C -0.177 4.177 25 C -0.110 4.110 26 C -0.216 4.216 27 C -0.083 4.083 28 C 0.165 3.835 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.145 0.855 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.283 0.717 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.083 0.917 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 13.268 3.460 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.167 4.167 3 C -0.246 4.246 4 C 0.109 3.891 5 N -0.323 5.323 6 C -0.070 4.070 7 C 0.304 3.696 8 O -0.414 6.414 9 C 0.302 3.698 10 O -0.421 6.421 11 N -0.316 5.316 12 C -0.005 4.005 13 C -0.098 4.098 14 C -0.176 4.176 15 C 0.080 3.920 16 C -0.519 4.519 17 H 0.095 0.905 18 C -0.178 4.178 19 N -0.465 5.465 20 Si 0.797 3.203 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.197 4.197 25 C -0.128 4.128 26 C -0.235 4.235 27 C -0.083 4.083 28 C 0.043 3.957 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.162 0.838 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.101 0.899 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.653 13.360 2.965 13.940 hybrid contribution -0.252 -1.158 0.145 1.194 sum 2.401 12.201 3.110 12.818 Atomic orbital electron populations 1.19130 0.82709 1.04512 1.04074 1.23346 0.95109 0.97512 1.00745 1.23024 0.94643 1.04370 1.02588 1.18558 0.82950 0.82022 1.05599 1.47956 1.63179 1.15670 1.05526 1.22123 1.03697 0.92462 0.88767 1.20221 0.76863 0.88327 0.84149 1.90766 1.51607 1.54825 1.44167 1.20203 0.85876 0.86047 0.77687 1.90752 1.18444 1.79749 1.53175 1.48130 1.06730 1.11430 1.65357 1.21859 1.01770 0.78311 0.98560 1.20346 0.92459 0.99254 0.97763 1.19617 0.96489 0.95064 1.06443 1.17941 0.92205 0.92561 0.89263 1.19747 0.97549 0.91663 1.42943 0.90488 1.26598 0.94532 1.04216 0.92450 1.69857 1.08989 1.32168 1.35523 0.85252 0.79514 0.76975 0.78574 1.18150 1.19475 1.19580 1.21250 0.97197 0.96084 1.05163 1.20853 0.98689 0.93826 0.99425 1.20509 0.93749 0.99857 1.09418 1.19267 0.94590 0.93793 1.00692 1.20462 0.77864 0.96363 1.00987 0.87966 0.89469 0.89156 0.83782 0.87577 0.89639 0.87430 0.92889 0.88327 0.89477 0.90276 0.92737 0.90676 0.88538 0.87080 0.86583 0.89872 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.77 10.32 70.18 0.72 -0.05 16 2 C -0.17 -3.80 14.13 31.13 0.44 -3.36 16 3 C -0.25 -5.78 13.68 31.13 0.43 -5.35 16 4 C 0.23 4.51 5.90 84.58 0.50 5.00 16 5 N -0.59 -14.51 2.83 -858.98 -2.43 -16.94 16 6 C 0.07 1.49 10.23 127.77 1.31 2.80 16 7 C 0.52 16.55 5.60 87.27 0.49 17.04 16 8 O -0.54 -19.37 16.65 -3.25 -0.05 -19.42 16 9 C 0.52 17.83 5.72 87.27 0.50 18.33 16 10 O -0.54 -20.69 16.60 -3.23 -0.05 -20.75 16 11 N -0.58 -19.63 2.93 -825.50 -2.42 -22.05 16 12 C 0.12 3.83 6.44 86.17 0.55 4.38 16 13 C -0.06 -2.31 4.98 29.74 0.15 -2.16 16 14 C -0.17 -7.63 5.82 -19.40 -0.11 -7.74 16 15 C 0.08 4.10 5.53 -21.18 -0.12 3.99 16 16 C -0.49 -24.51 7.84 23.46 0.18 -24.33 16 17 H 0.08 3.73 7.12 -2.91 -0.02 3.71 16 18 C 0.03 1.69 5.29 85.26 0.45 2.14 16 19 N -0.84 -42.56 10.92 21.83 0.24 -42.32 16 20 Si 0.97 37.30 29.56 68.60 2.03 39.33 16 21 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 22 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 23 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 24 C -0.18 -8.78 8.60 22.66 0.19 -8.58 16 25 C -0.11 -4.67 10.03 22.15 0.22 -4.45 16 26 C -0.22 -8.38 9.63 22.55 0.22 -8.16 16 27 C -0.08 -3.25 5.81 -19.85 -0.12 -3.36 16 28 C 0.17 5.50 6.04 85.65 0.52 6.01 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.14 1.67 8.07 -2.39 -0.02 1.65 16 33 H 0.11 2.18 7.36 -2.39 -0.02 2.16 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.11 1.72 8.03 -2.39 -0.02 1.70 16 36 H 0.05 1.39 6.99 -2.39 -0.02 1.38 16 37 H 0.10 3.11 7.10 -2.39 -0.02 3.09 16 38 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.08 3.11 7.15 -2.39 -0.02 3.10 16 40 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.28 13.17 8.30 -92.71 -0.77 12.40 16 42 H 0.10 5.11 6.40 -2.91 -0.02 5.09 16 43 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 44 H 0.12 3.81 8.05 -2.91 -0.02 3.79 16 45 H 0.08 2.67 6.62 -2.39 -0.02 2.66 16 46 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -65.00 388.65 4.84 -60.17 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 1.01 Total: 29.84 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 6.53 Total: -7.85 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -4.62 Total: -81.32 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.11 Total: -40.17 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.03 Total: 39.33 kcal Total: -65.00 4.84 -60.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118843281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.761 kcal (2) G-P(sol) polarization free energy of solvation -65.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds