Wall clock time and date at job start Sat Apr 11 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 120.00247 * 2 1 4 4 C 1.53006 * 109.46866 * 124.99980 * 3 2 1 5 5 N 1.46902 * 109.46626 * 180.02562 * 4 3 2 6 6 C 1.47026 * 110.99871 * 293.30585 * 5 4 3 7 7 C 1.53067 * 109.43713 * 177.64804 * 6 5 4 8 8 O 1.43083 * 109.35979 * 56.42222 * 7 6 5 9 9 C 1.42881 * 113.55487 * 301.73209 * 8 7 6 10 10 H 1.08997 * 108.83633 * 299.91081 * 9 8 7 11 11 C 1.52831 * 109.25572 * 179.63906 * 9 8 7 12 12 C 1.53171 * 110.34900 * 299.26090 * 11 9 8 13 13 N 1.46960 * 108.61186 * 305.91084 * 12 11 9 14 14 C 1.34780 * 120.68640 * 234.07443 * 13 12 11 15 15 O 1.21280 * 120.00035 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.99713 * 0.02562 * 14 13 12 17 17 S 1.81001 * 109.46874 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00053 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99954 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99929 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99927 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00237 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46949 * 90.00062 * 22 20 18 24 24 H 1.48494 * 109.47315 * 210.00217 * 22 20 18 25 25 H 1.48505 * 109.46930 * 330.00259 * 22 20 18 26 26 C 1.46860 * 118.62978 * 54.09582 * 13 12 11 27 27 C 1.47271 * 110.99628 * 170.00323 * 5 4 3 28 28 H 1.09001 * 109.72550 * 302.93521 * 27 5 4 29 29 H 1.07998 * 119.99939 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99621 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99621 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.47512 * 5.00103 * 3 2 1 33 33 H 1.09000 * 109.47247 * 244.99812 * 3 2 1 34 34 H 1.09000 * 109.47050 * 299.99952 * 4 3 2 35 35 H 1.09001 * 109.46801 * 60.00064 * 4 3 2 36 36 H 1.09003 * 109.48230 * 297.63302 * 6 5 4 37 37 H 1.09001 * 109.48068 * 57.65696 * 6 5 4 38 38 H 1.08996 * 109.48940 * 296.46302 * 7 6 5 39 39 H 1.09001 * 109.49338 * 176.39361 * 7 6 5 40 40 H 1.08999 * 108.68864 * 179.23681 * 11 9 8 41 41 H 1.08995 * 109.42562 * 59.75458 * 11 9 8 42 42 H 1.09005 * 109.61419 * 186.17423 * 12 11 9 43 43 H 1.09007 * 109.61525 * 65.64858 * 12 11 9 44 44 H 1.09002 * 109.47146 * 299.99085 * 16 14 13 45 45 H 1.08995 * 109.47449 * 59.99742 * 16 14 13 46 46 H 0.96999 * 119.99897 * 179.97438 * 21 20 18 47 47 H 1.08992 * 109.55731 * 186.14556 * 26 13 12 48 48 H 1.09002 * 109.63617 * 65.88685 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1817 5 7 3.7692 2.6054 1.1820 6 6 4.6571 2.7017 0.0141 7 6 5.3588 4.0621 0.0184 8 8 6.0610 4.2296 1.2537 9 6 5.2198 4.1416 2.4053 10 1 4.4611 4.9220 2.3474 11 6 6.0673 4.3246 3.6638 12 6 7.1319 3.2271 3.7533 13 7 6.4670 1.9199 3.6592 14 6 6.6613 0.9797 4.6052 15 8 6.1066 -0.0951 4.5149 16 6 7.5677 1.2640 5.7751 17 16 7.6215 -0.1824 6.8620 18 6 8.7200 0.4102 8.1057 19 1 9.1309 1.4063 8.0332 20 6 9.0563 -0.4028 9.1792 21 7 9.8765 0.0400 10.1086 22 14 8.3450 -2.1255 9.3051 23 1 9.2458 -3.0845 8.6165 24 1 8.2176 -2.5052 10.7350 25 1 7.0059 -2.1562 8.6636 26 6 5.5869 1.6590 2.5129 27 6 4.5363 2.7717 2.4281 28 1 3.8649 2.7098 3.2845 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3588 2.1316 0.0896 33 1 2.6214 1.4025 -0.9314 34 1 2.4773 1.2355 2.1131 35 1 3.7400 0.5063 1.0921 36 1 5.4030 1.9080 0.0581 37 1 4.0700 2.5985 -0.8984 38 1 4.6174 4.8539 -0.0887 39 1 6.0647 4.1099 -0.8107 40 1 5.4149 4.2694 4.5353 41 1 6.5530 5.3000 3.6351 42 1 7.6566 3.3030 4.7058 43 1 7.8407 3.3370 2.9325 44 1 8.5718 1.4833 5.4119 45 1 7.1867 2.1211 6.3301 46 1 10.1113 -0.5280 10.8590 47 1 5.0904 0.6978 2.6455 48 1 6.1754 1.6422 1.5956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176931368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:31 Heat of formation + Delta-G solvation = -68.673315 kcal Electronic energy + Delta-G solvation = -28170.171624 eV Core-core repulsion = 24351.151244 eV Total energy + Delta-G solvation = -3819.020381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.00481 -40.34031 -37.86747 -37.15927 -35.45858 -34.67939 -33.34122 -32.01757 -30.72623 -30.52629 -27.92451 -27.57072 -26.29596 -24.77992 -24.21825 -22.30545 -21.23489 -20.67990 -19.98359 -19.52661 -18.36885 -17.63465 -17.22061 -17.16396 -17.06578 -16.96126 -16.35551 -16.09927 -15.95643 -15.55228 -15.43936 -15.11201 -14.90584 -14.74124 -14.43634 -14.19186 -14.00124 -13.71048 -13.65563 -13.52192 -13.35777 -13.05505 -13.01864 -12.82383 -12.69408 -12.32250 -12.25366 -11.97998 -11.88262 -11.85135 -11.82402 -11.35849 -11.18111 -11.01252 -10.62972 -10.53227 -10.20198 -10.08619 -9.25581 -9.01419 -8.52174 -6.23355 0.94768 1.30108 1.36257 1.43786 1.45454 1.51710 1.97357 2.23942 2.64475 2.69339 2.80423 2.85999 3.41671 3.61356 3.73514 3.80834 3.93130 3.97961 4.00335 4.03884 4.09365 4.16737 4.21301 4.27350 4.36842 4.42872 4.43465 4.45652 4.47703 4.64473 4.67462 4.71473 4.80163 4.85208 4.92067 4.96115 5.01674 5.03886 5.11547 5.18841 5.36192 5.70448 5.73403 5.80010 5.87093 5.90806 6.11091 6.18386 6.21659 6.93018 7.00831 8.60102 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.002778 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.181961 B =10075.556347 C =11695.032480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.169 4.169 3 C -0.079 4.079 4 C 0.056 3.944 5 N -0.521 5.521 6 C 0.006 3.994 7 C 0.063 3.937 8 O -0.389 6.389 9 C 0.106 3.894 10 H 0.082 0.918 11 C -0.123 4.123 12 C 0.104 3.896 13 N -0.601 5.601 14 C 0.534 3.466 15 O -0.565 6.565 16 C -0.104 4.104 17 S -0.178 6.178 18 C -0.526 4.526 19 H 0.064 0.936 20 C 0.047 3.953 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.258 1.258 25 H -0.238 1.238 26 C 0.094 3.906 27 C 0.046 3.954 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.038 0.962 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.277 0.723 47 H 0.067 0.933 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.914 11.013 -24.869 31.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.187 4.187 3 C -0.116 4.116 4 C -0.071 4.071 5 N -0.245 5.245 6 C -0.122 4.122 7 C -0.013 4.013 8 O -0.308 6.308 9 C 0.048 3.952 10 H 0.100 0.900 11 C -0.161 4.161 12 C -0.018 4.018 13 N -0.335 5.335 14 C 0.322 3.678 15 O -0.444 6.444 16 C -0.255 4.255 17 S 0.049 5.951 18 C -0.674 4.674 19 H 0.083 0.917 20 C -0.159 4.159 21 N -0.553 5.553 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.182 1.182 25 H -0.162 1.162 26 C -0.030 4.030 27 C -0.064 4.064 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.125 0.875 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.783 9.854 -24.870 31.060 hybrid contribution 1.097 -0.475 0.748 1.411 sum -14.685 9.378 -24.122 29.758 Atomic orbital electron populations 1.24029 0.95851 1.02593 1.00152 1.22991 0.96458 0.98495 1.00788 1.20655 0.97759 0.95549 0.97633 1.22113 0.95888 0.89304 0.99825 1.62716 1.26098 1.34150 1.01518 1.23021 0.95746 0.98590 0.94831 1.22800 0.96761 0.95187 0.86600 1.87996 1.35597 1.92895 1.14341 1.22047 0.92374 0.94320 0.86433 0.90023 1.21908 0.97956 1.00084 0.96158 1.21965 0.95514 0.80196 1.04087 1.47990 1.47223 1.15419 1.22833 1.20092 0.81080 0.83641 0.83012 1.90665 1.50682 1.25580 1.77428 1.23264 1.02900 1.02426 0.96904 1.84744 1.62415 1.22733 1.25256 1.22427 1.31265 1.04157 1.09530 0.91734 1.25533 0.94233 1.02121 0.94011 1.70010 1.34337 1.38981 1.12002 0.85890 0.81423 0.79993 0.79207 1.18798 1.18249 1.16204 1.22150 0.92664 0.99763 0.88434 1.22747 0.93912 0.95764 0.93972 0.89396 0.87899 0.87809 0.87695 0.90378 0.90075 0.91467 0.95216 0.94429 0.87496 0.91392 0.86717 0.89523 0.87108 0.88624 0.89689 0.87074 0.86648 0.91350 0.91410 0.90810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 14.32 67.78 0.97 -1.49 16 2 C -0.17 -2.41 9.52 25.64 0.24 -2.17 16 3 C -0.08 -1.04 5.60 29.85 0.17 -0.87 16 4 C 0.06 0.96 4.31 86.31 0.37 1.34 16 5 N -0.52 -8.47 4.69 -868.83 -4.07 -12.55 16 6 C 0.01 0.08 5.02 86.30 0.43 0.51 16 7 C 0.06 0.75 7.01 72.00 0.50 1.26 16 8 O -0.39 -6.50 9.53 -148.98 -1.42 -7.92 16 9 C 0.11 1.72 2.94 30.57 0.09 1.81 16 10 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 11 C -0.12 -1.91 5.75 30.60 0.18 -1.73 16 12 C 0.10 2.11 6.16 86.35 0.53 2.64 16 13 N -0.60 -16.35 2.97 -818.87 -2.43 -18.78 16 14 C 0.53 19.51 7.72 87.66 0.68 20.18 16 15 O -0.56 -25.17 15.28 -3.03 -0.05 -25.22 16 16 C -0.10 -4.02 4.50 71.24 0.32 -3.70 16 17 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16 18 C -0.53 -30.63 10.04 67.95 0.68 -29.95 16 19 H 0.06 3.94 8.03 -2.91 -0.02 3.91 16 20 C 0.05 2.74 5.50 84.86 0.47 3.20 16 21 N -0.92 -55.66 13.97 21.65 0.30 -55.36 16 22 Si 0.91 45.23 27.74 68.60 1.90 47.13 16 23 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 26 C 0.09 2.31 4.76 86.40 0.41 2.72 16 27 C 0.05 0.89 2.48 44.97 0.11 1.00 16 28 H 0.09 1.89 8.09 -2.39 -0.02 1.87 16 29 H 0.10 1.18 8.06 -2.91 -0.02 1.16 16 30 H 0.10 1.17 7.84 -2.91 -0.02 1.15 16 31 H 0.11 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.08 1.01 7.79 -2.39 -0.02 0.99 16 33 H 0.08 0.91 6.53 -2.39 -0.02 0.89 16 34 H 0.07 1.31 8.04 -2.39 -0.02 1.29 16 35 H 0.03 0.58 7.02 -2.39 -0.02 0.57 16 36 H 0.04 0.60 6.14 -2.39 -0.01 0.58 16 37 H 0.11 1.02 6.39 -2.39 -0.02 1.01 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.10 1.91 5.94 -2.38 -0.01 1.89 16 43 H 0.08 1.64 7.92 -2.38 -0.02 1.62 16 44 H 0.11 3.98 7.94 -2.39 -0.02 3.96 16 45 H 0.12 4.04 7.70 -2.40 -0.02 4.02 16 46 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 47 H 0.07 2.02 5.92 -2.39 -0.01 2.00 16 48 H 0.07 1.76 5.79 -2.39 -0.01 1.75 16 Total: -1.00 -72.38 381.53 0.25 -72.12 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.91 Total: 15.97 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 6.16 Total: -5.24 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -6.20 Total: -86.69 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.47 Total: -33.14 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.13 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Total: -72.38 0.25 -72.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176931368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.452 kcal (2) G-P(sol) polarization free energy of solvation -72.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds