Wall clock time and date at job start Sat Apr 11 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00040 * 2 1 4 4 C 1.50695 * 119.99740 * 180.02562 * 2 1 3 5 5 N 1.46905 * 109.47127 * 94.99590 * 4 2 1 6 6 C 1.47023 * 110.99875 * 46.68791 * 5 4 2 7 7 C 1.53067 * 109.43696 * 182.35528 * 6 5 4 8 8 O 1.43078 * 109.35578 * 303.56774 * 7 6 5 9 9 C 1.42879 * 113.55198 * 58.27510 * 8 7 6 10 10 H 1.09005 * 108.82168 * 60.08430 * 9 8 7 11 11 C 1.52768 * 110.03631 * 179.83221 * 9 8 7 12 12 C 1.53643 * 109.50984 * 59.72149 * 11 9 8 13 13 N 1.46960 * 108.35747 * 54.78610 * 12 11 9 14 14 C 1.34777 * 120.68937 * 125.84161 * 13 12 11 15 15 O 1.21283 * 119.99750 * 179.72122 * 14 13 12 16 16 C 1.50702 * 119.99928 * 0.02562 * 14 13 12 17 17 S 1.80999 * 109.46903 * 179.72354 * 16 14 13 18 18 C 1.76200 * 99.99730 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00095 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00384 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46990 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47522 * 119.99735 * 22 20 18 25 25 H 1.48500 * 109.47073 * 240.00101 * 22 20 18 26 26 C 1.46862 * 118.61877 * 305.57183 * 13 12 11 27 27 C 1.47266 * 110.99715 * 170.00018 * 5 4 2 28 28 H 1.08993 * 110.49395 * 56.61425 * 27 5 4 29 29 H 1.08000 * 120.00092 * 179.97438 * 1 2 3 30 30 H 1.08008 * 119.99684 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47315 * 270.00242 * 3 2 1 32 32 H 1.08998 * 109.47316 * 30.00696 * 3 2 1 33 33 H 1.08998 * 109.46963 * 150.00385 * 3 2 1 34 34 H 1.09006 * 109.47366 * 334.99766 * 4 2 1 35 35 H 1.08998 * 109.47357 * 214.99489 * 4 2 1 36 36 H 1.09003 * 109.48178 * 62.36686 * 6 5 4 37 37 H 1.09004 * 109.48475 * 302.34632 * 6 5 4 38 38 H 1.09003 * 109.49249 * 183.59794 * 7 6 5 39 39 H 1.09001 * 109.50722 * 63.54089 * 7 6 5 40 40 H 1.09000 * 109.45116 * 179.89025 * 11 9 8 41 41 H 1.09003 * 109.44895 * 299.84231 * 11 9 8 42 42 H 1.08997 * 109.77196 * 295.10738 * 12 11 9 43 43 H 1.09001 * 109.70067 * 174.42505 * 12 11 9 44 44 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 45 45 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 46 46 H 0.97002 * 120.00288 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.55597 * 174.14273 * 26 13 12 48 48 H 1.08997 * 109.56093 * 294.45534 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4127 -1.6683 -1.3805 6 6 2.9795 -0.5185 -2.1005 7 6 3.2754 -0.9194 -3.5478 8 8 4.1478 -2.0534 -3.5569 9 6 3.6194 -3.1858 -2.8642 10 1 2.6843 -3.4835 -3.3388 11 6 4.6100 -4.3470 -2.9272 12 6 5.9370 -3.9253 -2.2778 13 7 5.6548 -3.4458 -0.9176 14 6 6.2986 -3.9703 0.1440 15 8 6.0596 -3.5617 1.2607 16 6 7.3203 -5.0597 -0.0572 17 16 8.0085 -5.5447 1.5451 18 6 9.1388 -6.7933 1.0272 19 1 9.2302 -7.0380 -0.0207 20 6 9.9125 -7.4616 1.9660 21 7 9.8022 -7.1623 3.2431 22 14 11.1114 -8.7848 1.4170 23 1 11.0462 -8.9300 -0.0595 24 1 12.4891 -8.4013 1.8167 25 1 10.7513 -10.0754 2.0571 26 6 4.6612 -2.3792 -0.7397 27 6 3.3484 -2.8052 -1.4062 28 1 2.9265 -3.6587 -0.8756 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 2.2452 1.6198 -1.0276 32 1 1.4746 2.0647 0.5139 33 1 3.0160 1.1747 0.5138 34 1 1.4385 -2.0857 0.4334 35 1 2.9742 -1.1992 0.5888 36 1 3.9032 -0.2045 -1.6143 37 1 2.2653 0.3049 -2.0903 38 1 3.7543 -0.0879 -4.0649 39 1 2.3435 -1.1734 -4.0529 40 1 4.1985 -5.2045 -2.3947 41 1 4.7869 -4.6171 -3.9684 42 1 6.3947 -3.1255 -2.8601 43 1 6.6117 -4.7802 -2.2319 44 1 6.8447 -5.9221 -0.5244 45 1 8.1203 -4.6932 -0.7003 46 1 10.3426 -7.6296 3.8992 47 1 4.4925 -2.2114 0.3241 48 1 5.0242 -1.4614 -1.2022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176931407.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:44 Heat of formation + Delta-G solvation = -40.210870 kcal Electronic energy + Delta-G solvation = -28463.175157 eV Core-core repulsion = 24645.389001 eV Total energy + Delta-G solvation = -3817.786156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.10954 -39.02987 -37.45509 -35.99320 -34.46816 -32.43419 -32.27483 -30.68944 -29.64923 -28.47814 -27.50002 -25.66369 -25.24676 -24.82813 -23.83944 -22.06610 -19.98586 -18.94206 -18.70671 -17.72671 -16.94347 -16.77432 -16.31439 -16.03581 -15.81389 -15.20529 -15.07461 -14.84739 -14.80646 -14.50224 -14.19091 -13.89686 -13.73283 -13.53684 -13.45405 -13.03254 -12.82591 -12.71666 -12.55580 -12.28703 -12.01837 -11.83285 -11.79412 -11.62958 -11.34467 -11.21422 -11.07372 -11.01801 -10.88479 -10.76550 -10.60193 -9.85984 -9.79715 -9.52564 -9.34079 -9.07754 -8.93850 -8.22630 -8.20453 -6.50457 -6.21977 -3.92519 1.85035 2.90306 3.03659 3.21413 3.25376 3.30773 3.46491 3.53578 3.68334 4.19819 4.32097 4.43185 4.59430 4.64186 4.68938 4.73097 4.84184 4.87135 4.92828 5.01318 5.10265 5.12675 5.13301 5.20701 5.29033 5.31673 5.38079 5.44393 5.50322 5.52926 5.57199 5.59341 5.66532 5.68388 5.69016 5.78534 5.84787 5.87872 6.00452 6.11792 6.26516 6.47061 6.53659 6.62913 6.73420 6.92249 7.56186 7.59927 8.35218 8.55064 9.23478 10.85510 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.002585 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.042679 B =10829.744747 C =11804.030700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.130 4.130 3 C -0.125 4.125 4 C 0.080 3.920 5 N -0.518 5.518 6 C 0.003 3.997 7 C 0.065 3.935 8 O -0.376 6.376 9 C 0.103 3.897 10 H 0.067 0.933 11 C -0.127 4.127 12 C 0.111 3.889 13 N -0.615 5.615 14 C 0.535 3.465 15 O -0.519 6.519 16 C -0.149 4.149 17 S -0.062 6.062 18 C -0.533 4.533 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.088 3.912 27 C 0.039 3.961 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.092 0.908 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.635 14.050 -15.009 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.130 4.130 3 C -0.182 4.182 4 C -0.046 4.046 5 N -0.242 5.242 6 C -0.124 4.124 7 C -0.012 4.012 8 O -0.295 6.295 9 C 0.044 3.956 10 H 0.085 0.915 11 C -0.165 4.165 12 C -0.012 4.012 13 N -0.351 5.351 14 C 0.323 3.677 15 O -0.394 6.394 16 C -0.300 4.300 17 S 0.164 5.836 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.036 4.036 27 C -0.071 4.071 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.110 0.890 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.168 14.472 -13.487 26.859 hybrid contribution 1.439 -1.015 -1.078 2.065 sum -16.729 13.457 -14.565 25.944 Atomic orbital electron populations 1.23718 0.95078 1.01912 1.00299 1.21594 0.95523 0.95035 1.00876 1.21100 1.00410 0.94563 1.02129 1.21325 0.99180 0.94935 0.89185 1.62812 1.40653 1.06142 1.14556 1.23127 0.99555 0.94443 0.95321 1.22653 0.94536 0.88920 0.95131 1.87981 1.44481 1.21923 1.75120 1.21971 0.96795 0.86673 0.90114 0.91509 1.21992 0.95621 0.96480 1.02454 1.21775 0.96725 1.00460 0.82244 1.48010 1.41532 1.38671 1.06936 1.20374 0.81078 0.82466 0.83785 1.90683 1.64380 1.60873 1.23428 1.23545 0.99626 0.98816 1.07995 1.85409 1.49195 1.47764 1.01198 1.22894 1.25973 1.23261 0.96032 0.90875 1.24999 0.96896 0.97227 0.94514 1.70031 1.39171 1.40567 1.00540 0.86114 0.80076 0.80527 0.78766 1.19595 1.20572 1.20572 1.22089 0.88371 0.90751 1.02418 1.22811 0.91477 0.95099 0.97714 0.88278 0.88201 0.88496 0.91181 0.91767 0.91785 0.89746 0.93073 0.93275 0.88726 0.88546 0.92439 0.89617 0.89487 0.90667 0.89001 0.89200 0.89224 0.92247 0.89008 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 13.89 29.01 0.40 -0.88 16 2 C -0.13 -1.07 4.42 -101.07 -0.45 -1.51 16 3 C -0.13 -0.88 9.06 36.00 0.33 -0.56 16 4 C 0.08 0.78 5.31 -4.98 -0.03 0.75 16 5 N -0.52 -4.97 4.83 -227.41 -1.10 -6.07 16 6 C 0.00 0.03 4.05 -3.72 -0.02 0.01 16 7 C 0.06 0.52 7.01 37.19 0.26 0.79 16 8 O -0.38 -3.87 9.43 -35.23 -0.33 -4.21 16 9 C 0.10 1.01 2.87 -26.80 -0.08 0.94 16 10 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 11 C -0.13 -1.21 5.84 -26.52 -0.15 -1.36 16 12 C 0.11 1.30 6.16 -3.46 -0.02 1.27 16 13 N -0.62 -9.09 2.96 -172.46 -0.51 -9.60 16 14 C 0.53 10.36 7.72 -10.98 -0.08 10.27 16 15 O -0.52 -12.02 15.28 5.55 0.08 -11.93 16 16 C -0.15 -3.05 4.50 36.01 0.16 -2.89 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.18 9.50 30.94 0.29 -14.88 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 22 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.09 1.17 4.77 -3.70 -0.02 1.15 16 27 C 0.04 0.42 2.55 -67.32 -0.17 0.25 16 28 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.10 0.74 7.99 -52.49 -0.42 0.32 16 30 H 0.10 0.61 8.04 -52.48 -0.42 0.18 16 31 H 0.07 0.43 6.18 -51.93 -0.32 0.11 16 32 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 33 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.08 0.82 7.99 -51.93 -0.41 0.41 16 35 H 0.05 0.56 6.05 -51.93 -0.31 0.25 16 36 H 0.05 0.46 6.12 -51.93 -0.32 0.14 16 37 H 0.09 0.70 4.83 -51.93 -0.25 0.44 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.86 7.88 -51.93 -0.41 0.45 16 43 H 0.09 1.06 5.94 -51.93 -0.31 0.75 16 44 H 0.09 1.68 7.72 -51.91 -0.40 1.28 16 45 H 0.09 1.71 7.93 -51.92 -0.41 1.30 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.09 1.40 5.49 -51.93 -0.28 1.11 16 48 H 0.07 0.90 5.71 -51.93 -0.30 0.60 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -33.82 379.27 -9.80 -43.62 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.49 Total: 0.17 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 0.34 Total: -4.67 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: -0.88 Total: -41.16 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.25 Total: -16.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.82 -9.80 -43.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176931407.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.411 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds