Wall clock time and date at job start Sat Apr 11 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 120.00040 * 2 1 4 4 C 1.50695 * 119.99740 * 180.02562 * 2 1 3 5 5 N 1.46905 * 109.47127 * 94.99590 * 4 2 1 6 6 C 1.47023 * 110.99875 * 46.68791 * 5 4 2 7 7 C 1.53067 * 109.43696 * 182.35528 * 6 5 4 8 8 O 1.43078 * 109.35578 * 303.56774 * 7 6 5 9 9 C 1.42879 * 113.55198 * 58.27510 * 8 7 6 10 10 H 1.09005 * 108.82168 * 60.08430 * 9 8 7 11 11 C 1.52768 * 110.03631 * 179.83221 * 9 8 7 12 12 C 1.53643 * 109.50984 * 59.72149 * 11 9 8 13 13 N 1.46960 * 108.35747 * 54.78610 * 12 11 9 14 14 C 1.34777 * 120.68937 * 125.84161 * 13 12 11 15 15 O 1.21283 * 119.99750 * 179.72122 * 14 13 12 16 16 C 1.50702 * 119.99928 * 0.02562 * 14 13 12 17 17 S 1.80999 * 109.46903 * 179.72354 * 16 14 13 18 18 C 1.76200 * 99.99730 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00095 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00384 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46990 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47522 * 119.99735 * 22 20 18 25 25 H 1.48500 * 109.47073 * 240.00101 * 22 20 18 26 26 C 1.46862 * 118.61877 * 305.57183 * 13 12 11 27 27 C 1.47266 * 110.99715 * 170.00018 * 5 4 2 28 28 H 1.08993 * 110.49395 * 56.61425 * 27 5 4 29 29 H 1.08000 * 120.00092 * 179.97438 * 1 2 3 30 30 H 1.08008 * 119.99684 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47315 * 270.00242 * 3 2 1 32 32 H 1.08998 * 109.47316 * 30.00696 * 3 2 1 33 33 H 1.08998 * 109.46963 * 150.00385 * 3 2 1 34 34 H 1.09006 * 109.47366 * 334.99766 * 4 2 1 35 35 H 1.08998 * 109.47357 * 214.99489 * 4 2 1 36 36 H 1.09003 * 109.48178 * 62.36686 * 6 5 4 37 37 H 1.09004 * 109.48475 * 302.34632 * 6 5 4 38 38 H 1.09003 * 109.49249 * 183.59794 * 7 6 5 39 39 H 1.09001 * 109.50722 * 63.54089 * 7 6 5 40 40 H 1.09000 * 109.45116 * 179.89025 * 11 9 8 41 41 H 1.09003 * 109.44895 * 299.84231 * 11 9 8 42 42 H 1.08997 * 109.77196 * 295.10738 * 12 11 9 43 43 H 1.09001 * 109.70067 * 174.42505 * 12 11 9 44 44 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 45 45 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 46 46 H 0.97002 * 120.00288 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.55597 * 174.14273 * 26 13 12 48 48 H 1.08997 * 109.56093 * 294.45534 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4127 -1.6683 -1.3805 6 6 2.9795 -0.5185 -2.1005 7 6 3.2754 -0.9194 -3.5478 8 8 4.1478 -2.0534 -3.5569 9 6 3.6194 -3.1858 -2.8642 10 1 2.6843 -3.4835 -3.3388 11 6 4.6100 -4.3470 -2.9272 12 6 5.9370 -3.9253 -2.2778 13 7 5.6548 -3.4458 -0.9176 14 6 6.2986 -3.9703 0.1440 15 8 6.0596 -3.5617 1.2607 16 6 7.3203 -5.0597 -0.0572 17 16 8.0085 -5.5447 1.5451 18 6 9.1388 -6.7933 1.0272 19 1 9.2302 -7.0380 -0.0207 20 6 9.9125 -7.4616 1.9660 21 7 9.8022 -7.1623 3.2431 22 14 11.1114 -8.7848 1.4170 23 1 11.0462 -8.9300 -0.0595 24 1 12.4891 -8.4013 1.8167 25 1 10.7513 -10.0754 2.0571 26 6 4.6612 -2.3792 -0.7397 27 6 3.3484 -2.8052 -1.4062 28 1 2.9265 -3.6587 -0.8756 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 2.2452 1.6198 -1.0276 32 1 1.4746 2.0647 0.5139 33 1 3.0160 1.1747 0.5138 34 1 1.4385 -2.0857 0.4334 35 1 2.9742 -1.1992 0.5888 36 1 3.9032 -0.2045 -1.6143 37 1 2.2653 0.3049 -2.0903 38 1 3.7543 -0.0879 -4.0649 39 1 2.3435 -1.1734 -4.0529 40 1 4.1985 -5.2045 -2.3947 41 1 4.7869 -4.6171 -3.9684 42 1 6.3947 -3.1255 -2.8601 43 1 6.6117 -4.7802 -2.2319 44 1 6.8447 -5.9221 -0.5244 45 1 8.1203 -4.6932 -0.7003 46 1 10.3426 -7.6296 3.8992 47 1 4.4925 -2.2114 0.3241 48 1 5.0242 -1.4614 -1.2022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176931407.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:44 Heat of formation + Delta-G solvation = -63.522497 kcal Electronic energy + Delta-G solvation = -28464.186025 eV Core-core repulsion = 24645.389001 eV Total energy + Delta-G solvation = -3818.797024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.04980 -40.34682 -38.22087 -37.13674 -35.20478 -34.59118 -33.30091 -31.79174 -30.71240 -29.51311 -28.10116 -27.70825 -26.42553 -25.71956 -24.64500 -22.93545 -21.21327 -19.98973 -19.57798 -19.39351 -18.32427 -17.66754 -17.13360 -17.04588 -16.96511 -16.88326 -16.27722 -16.03710 -15.87149 -15.64193 -15.33609 -14.92663 -14.77292 -14.51832 -14.50149 -14.28030 -13.90671 -13.87508 -13.56665 -13.48797 -13.16484 -12.98862 -12.91381 -12.66631 -12.60328 -12.53109 -12.40104 -12.18027 -11.96343 -11.71984 -11.69437 -11.38259 -11.16437 -10.96393 -10.61241 -10.27184 -10.18367 -9.94762 -9.20740 -8.68751 -8.35302 -6.13926 1.20392 1.24804 1.41496 1.44701 1.50462 1.56872 2.01559 2.26380 2.75067 2.82827 2.99078 3.22427 3.48328 3.61379 3.76861 3.80750 3.87048 3.93440 3.99507 4.01927 4.09129 4.23663 4.24271 4.29301 4.37556 4.43146 4.46252 4.51253 4.61522 4.67002 4.71450 4.73141 4.76923 4.80330 4.88096 4.95988 4.99475 5.01122 5.12580 5.17912 5.38146 5.41767 5.63439 5.81991 5.87293 5.93098 6.19318 6.19906 6.22984 7.05936 7.06943 8.74274 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.002585 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.042679 B =10829.744747 C =11804.030700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.143 4.143 3 C -0.123 4.123 4 C 0.081 3.919 5 N -0.513 5.513 6 C 0.005 3.995 7 C 0.063 3.937 8 O -0.388 6.388 9 C 0.106 3.894 10 H 0.080 0.920 11 C -0.121 4.121 12 C 0.104 3.896 13 N -0.602 5.602 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.121 4.121 17 S -0.154 6.154 18 C -0.542 4.542 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.274 1.274 26 C 0.093 3.907 27 C 0.045 3.955 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.037 0.963 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.271 0.729 47 H 0.064 0.936 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.271 13.983 -18.347 29.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.179 4.179 4 C -0.046 4.046 5 N -0.237 5.237 6 C -0.123 4.123 7 C -0.014 4.014 8 O -0.307 6.307 9 C 0.048 3.952 10 H 0.098 0.902 11 C -0.160 4.160 12 C -0.018 4.018 13 N -0.336 5.336 14 C 0.321 3.679 15 O -0.447 6.447 16 C -0.272 4.272 17 S 0.073 5.927 18 C -0.690 4.690 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.822 3.178 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.031 4.031 27 C -0.065 4.065 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.130 0.870 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.833 14.426 -16.887 29.120 hybrid contribution 1.518 -0.870 -0.105 1.753 sum -17.315 13.556 -16.992 27.790 Atomic orbital electron populations 1.23861 0.94757 1.02694 0.98815 1.21590 0.95850 0.94652 1.02244 1.21084 0.99774 0.94218 1.02820 1.21289 0.98402 0.95869 0.89038 1.62875 1.39933 1.06403 1.14447 1.23187 0.99304 0.94317 0.95454 1.22831 0.94969 0.88867 0.94732 1.87966 1.45316 1.22429 1.74953 1.21971 0.97455 0.86843 0.88939 0.90247 1.22001 0.93980 0.96341 1.03651 1.22071 0.98468 1.00922 0.80316 1.48017 1.40411 1.37956 1.07226 1.20220 0.81215 0.82391 0.84117 1.90668 1.66028 1.62473 1.25546 1.23354 1.00242 1.00042 1.03597 1.85620 1.50510 1.48749 1.07785 1.23215 1.25973 1.23186 0.96630 0.89774 1.26153 0.98883 0.99805 0.94418 1.70197 1.40487 1.42149 1.02070 0.84886 0.77019 0.76852 0.79075 1.17852 1.20005 1.19924 1.22133 0.89321 0.90465 1.01214 1.22746 0.90028 0.95305 0.98446 0.89310 0.88310 0.86816 0.90048 0.90715 0.93089 0.90349 0.95160 0.94497 0.87317 0.86634 0.91514 0.89368 0.86967 0.89748 0.88536 0.87047 0.87460 0.92012 0.91722 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 13.89 67.78 0.94 -1.26 16 2 C -0.14 -2.24 4.42 -16.49 -0.07 -2.32 16 3 C -0.12 -1.61 9.06 71.24 0.65 -0.96 16 4 C 0.08 1.60 5.31 85.55 0.45 2.05 16 5 N -0.51 -9.45 4.83 -873.39 -4.22 -13.67 16 6 C 0.00 0.07 4.05 86.30 0.35 0.42 16 7 C 0.06 0.84 7.01 72.00 0.50 1.35 16 8 O -0.39 -6.91 9.43 -148.98 -1.41 -8.32 16 9 C 0.11 1.85 2.87 30.55 0.09 1.93 16 10 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 11 C -0.12 -1.97 5.84 30.73 0.18 -1.79 16 12 C 0.10 2.20 6.16 86.51 0.53 2.74 16 13 N -0.60 -17.59 2.96 -817.94 -2.42 -20.01 16 14 C 0.53 21.02 7.72 87.66 0.68 21.70 16 15 O -0.57 -27.70 15.28 -3.04 -0.05 -27.75 16 16 C -0.12 -4.95 4.50 71.24 0.32 -4.63 16 17 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 18 C -0.54 -31.02 9.50 67.95 0.65 -30.38 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.68 5.49 84.86 0.47 1.15 16 21 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 22 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 C 0.09 2.49 4.77 86.40 0.41 2.90 16 27 C 0.04 0.94 2.55 44.97 0.11 1.06 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.10 1.35 7.99 -2.91 -0.02 1.32 16 30 H 0.11 1.16 8.04 -2.91 -0.02 1.13 16 31 H 0.08 0.85 6.18 -2.39 -0.01 0.84 16 32 H 0.07 0.82 8.06 -2.39 -0.02 0.80 16 33 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 34 H 0.08 1.59 7.99 -2.38 -0.02 1.57 16 35 H 0.03 0.72 6.05 -2.39 -0.01 0.71 16 36 H 0.04 0.67 6.12 -2.39 -0.01 0.65 16 37 H 0.11 1.37 4.83 -2.38 -0.01 1.36 16 38 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.70 7.88 -2.39 -0.02 1.68 16 43 H 0.10 1.97 5.94 -2.39 -0.01 1.96 16 44 H 0.11 4.05 7.72 -2.39 -0.02 4.03 16 45 H 0.11 3.99 7.93 -2.40 -0.02 3.97 16 46 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 47 H 0.06 2.11 5.49 -2.39 -0.01 2.10 16 48 H 0.07 1.91 5.71 -2.39 -0.01 1.90 16 Total: -1.00 -75.97 379.27 0.27 -75.70 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.95 Total: 20.37 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 6.26 Total: -6.04 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -6.36 Total: -89.79 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -1.45 Total: -36.06 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -75.97 0.27 -75.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176931407.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.177 kcal (2) G-P(sol) polarization free energy of solvation -75.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds