Wall clock time and date at job start Sat Apr 11 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00176 * 2 1 4 4 C 1.52998 * 109.47020 * 125.00034 * 3 2 1 5 5 S 1.81398 * 109.47051 * 179.97438 * 4 3 2 6 6 C 1.81395 * 103.00160 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47334 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47360 * 180.02562 * 7 6 5 9 9 C 1.34782 * 120.00166 * 180.02562 * 8 7 6 10 10 O 1.21350 * 119.99528 * 359.97438 * 9 8 7 11 11 C 1.49446 * 120.00084 * 179.97438 * 9 8 7 12 12 O 1.21356 * 119.99803 * 353.37756 * 11 9 8 13 13 N 1.34768 * 120.00057 * 173.37736 * 11 9 8 14 14 C 1.46923 * 120.63140 * 353.06161 * 13 11 9 15 15 C 1.53197 * 108.77603 * 126.41596 * 14 13 11 16 16 C 1.53036 * 109.34037 * 54.62030 * 15 14 13 17 17 C 1.53043 * 109.53781 * 298.68543 * 16 15 14 18 18 H 1.09000 * 109.49772 * 301.34791 * 17 16 15 19 19 C 1.50699 * 109.49861 * 181.28187 * 17 16 15 20 20 H 1.08009 * 119.99826 * 0.06421 * 19 17 16 21 21 C 1.37874 * 120.00391 * 180.34183 * 19 17 16 22 22 N 1.31511 * 119.99935 * 359.72505 * 21 19 17 23 23 Si 1.86803 * 120.00371 * 179.72468 * 21 19 17 24 24 H 1.48501 * 109.46987 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47049 * 119.99668 * 23 21 19 26 26 H 1.48495 * 109.47162 * 239.99991 * 23 21 19 27 27 C 1.46927 * 120.63303 * 173.08900 * 13 11 9 28 28 H 1.07997 * 119.99789 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.99464 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99677 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47105 * 4.99770 * 3 2 1 32 32 H 1.09004 * 109.47073 * 245.00146 * 3 2 1 33 33 H 1.09003 * 109.46879 * 60.00446 * 4 3 2 34 34 H 1.08990 * 109.47087 * 300.00030 * 4 3 2 35 35 H 1.09004 * 109.47117 * 60.00271 * 6 5 4 36 36 H 1.08999 * 109.47465 * 300.00374 * 6 5 4 37 37 H 1.09007 * 109.47352 * 60.00093 * 7 6 5 38 38 H 1.09010 * 109.47442 * 300.00179 * 7 6 5 39 39 H 0.96996 * 120.00059 * 359.97438 * 8 7 6 40 40 H 1.08998 * 109.59171 * 246.19792 * 14 13 11 41 41 H 1.09003 * 109.58922 * 6.48999 * 14 13 11 42 42 H 1.08995 * 109.50150 * 174.58993 * 15 14 13 43 43 H 1.09009 * 109.49617 * 294.68452 * 15 14 13 44 44 H 1.08997 * 109.49188 * 178.64856 * 16 15 14 45 45 H 1.09001 * 109.43006 * 58.68768 * 16 15 14 46 46 H 0.97000 * 120.00590 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.59192 * 113.79627 * 27 13 11 48 48 H 1.08998 * 109.70190 * 353.44355 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 16 3.9427 2.9036 1.1812 6 6 5.0241 2.7505 2.6295 7 6 5.8698 4.0176 2.7708 8 7 6.7436 3.8937 3.9402 9 6 7.5834 4.8971 4.2633 10 8 7.6160 5.9030 3.5853 11 6 8.4743 4.7709 5.4565 12 8 8.3582 3.8209 6.2027 13 7 9.4067 5.7121 5.7039 14 6 9.6629 6.7852 4.7336 15 6 9.5448 8.1350 5.4485 16 6 10.4771 8.1491 6.6620 17 6 10.0625 7.0463 7.6389 18 1 9.0295 7.2044 7.9488 19 6 10.9614 7.0813 8.8479 20 1 11.7492 7.8172 8.9140 21 6 10.7818 6.1704 9.8672 22 7 9.8225 5.2743 9.7867 23 14 11.9009 6.2088 11.3624 24 1 12.8928 7.3034 11.2102 25 1 11.0883 6.4427 12.5831 26 1 12.6117 4.9105 11.4821 27 6 10.1866 5.6843 6.9488 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6214 1.4026 -0.9314 33 1 3.7400 0.5065 1.0920 34 1 2.4773 1.2355 2.1129 35 1 5.6790 1.8882 2.5044 36 1 4.4162 2.6181 3.5245 37 1 5.2146 4.8797 2.8962 38 1 6.4778 4.1504 1.8758 39 1 6.7172 3.0898 4.4823 40 1 10.6671 6.6754 4.3240 41 1 8.9314 6.7312 3.9273 42 1 9.8264 8.9351 4.7641 43 1 8.5165 8.2830 5.7786 44 1 10.4129 9.1172 7.1588 45 1 11.5022 7.9768 6.3338 46 1 9.6959 4.6336 10.5039 47 1 11.2334 5.4847 6.7199 48 1 9.8014 4.9050 7.6064 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261721911.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:59 Heat of formation + Delta-G solvation = -48.504059 kcal Electronic energy + Delta-G solvation = -26559.903990 eV Core-core repulsion = 22741.758214 eV Total energy + Delta-G solvation = -3818.145776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54269 -38.38183 -36.89541 -36.18822 -35.63574 -33.27279 -31.75903 -31.04976 -30.89402 -29.74526 -26.15758 -25.03407 -24.59934 -23.48254 -22.01746 -21.79840 -20.37759 -20.25242 -18.81938 -17.38887 -16.85439 -16.37073 -16.24585 -16.21629 -16.00478 -15.52652 -15.15922 -14.84713 -14.74326 -14.56287 -14.01752 -13.83082 -13.66313 -13.30899 -13.27837 -12.87393 -12.79050 -12.60113 -12.50269 -12.23188 -12.04539 -11.79961 -11.71530 -11.48041 -11.34140 -11.00687 -10.69494 -10.45659 -10.43023 -10.29381 -10.06822 -9.90181 -9.89242 -9.36378 -9.21723 -9.12573 -8.54716 -8.43404 -8.10485 -7.84310 -6.03444 -4.11414 1.01011 1.74776 1.77138 2.09051 2.76184 3.28584 3.36903 3.40393 3.60911 3.96736 4.25956 4.29645 4.40846 4.46218 4.46744 4.54376 4.69003 4.75445 4.97416 5.01574 5.23592 5.27365 5.38260 5.40729 5.49173 5.50658 5.63597 5.69212 5.84780 6.03447 6.10135 6.22242 6.24978 6.39138 6.58512 6.60256 6.73948 6.85792 6.98984 7.02180 7.16300 7.17998 7.58154 7.81718 7.93729 7.95320 8.14202 8.33854 8.54968 8.92972 9.54271 11.02262 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022243 B = 0.001792 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.493022 B =15620.912177 C =16624.391285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.154 4.154 3 C -0.078 4.078 4 C -0.083 4.083 5 S -0.240 6.240 6 C -0.106 4.106 7 C 0.135 3.865 8 N -0.704 5.704 9 C 0.514 3.486 10 O -0.511 6.511 11 C 0.496 3.504 12 O -0.525 6.525 13 N -0.566 5.566 14 C 0.050 3.950 15 C -0.128 4.128 16 C -0.113 4.113 17 C 0.040 3.960 18 H 0.029 0.971 19 C -0.518 4.518 20 H 0.060 0.940 21 C 0.062 3.938 22 N -0.883 5.883 23 Si 0.894 3.106 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.108 3.892 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.414 0.586 40 H 0.055 0.945 41 H 0.143 0.857 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.263 0.737 47 H 0.048 0.952 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.025 -8.566 -19.587 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.116 4.116 4 C -0.231 4.231 5 S -0.013 6.013 6 C -0.254 4.254 7 C 0.011 3.989 8 N -0.359 5.359 9 C 0.297 3.703 10 O -0.388 6.388 11 C 0.276 3.724 12 O -0.403 6.403 13 N -0.297 5.297 14 C -0.072 4.072 15 C -0.166 4.166 16 C -0.151 4.151 17 C 0.021 3.979 18 H 0.048 0.952 19 C -0.556 4.556 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.521 5.521 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.012 4.012 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.250 0.750 40 H 0.073 0.927 41 H 0.160 0.840 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.185 -7.636 -20.256 25.881 hybrid contribution 0.739 -1.453 2.064 2.631 sum -13.446 -9.088 -18.192 24.379 Atomic orbital electron populations 1.23928 0.95903 1.02160 1.00367 1.22861 0.96001 0.97949 1.00526 1.20472 0.97493 0.96288 0.97383 1.23371 1.00346 0.96798 1.02629 1.86941 1.49484 1.26722 1.38149 1.23538 1.00515 1.01871 0.99505 1.21018 0.92501 0.96382 0.89037 1.45788 1.39629 1.20708 1.29749 1.20810 0.81036 0.82928 0.85570 1.90319 1.66772 1.28789 1.52896 1.19698 0.82524 0.84345 0.85804 1.90759 1.69872 1.30884 1.48753 1.48444 1.34913 1.24997 1.21369 1.23085 1.03602 0.86687 0.93828 1.21857 1.00728 0.95935 0.98064 1.21664 0.97761 1.00271 0.95390 1.18986 0.97697 0.89063 0.92198 0.95239 1.21141 1.16308 1.16113 1.02061 0.92165 1.25062 0.95302 0.95370 0.98359 1.69877 1.30863 1.18259 1.33117 0.86509 0.80688 0.77911 0.82754 1.19736 1.20996 1.20971 1.22497 0.92817 1.04308 0.81547 0.88247 0.88368 0.87124 0.90388 0.89899 0.89728 0.89727 0.88997 0.88929 0.89925 0.89959 0.74990 0.92670 0.84036 0.92227 0.92323 0.93045 0.93237 0.92695 0.93342 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.90 14.32 29.01 0.42 -0.49 16 2 C -0.15 -0.77 9.52 -36.03 -0.34 -1.12 16 3 C -0.08 -0.43 5.66 -27.88 -0.16 -0.58 16 4 C -0.08 -0.49 5.92 37.16 0.22 -0.27 16 5 S -0.24 -1.93 21.74 -107.50 -2.34 -4.27 16 6 C -0.11 -0.80 6.05 37.16 0.22 -0.57 16 7 C 0.13 1.35 5.68 -4.04 -0.02 1.32 16 8 N -0.70 -8.73 5.55 -60.72 -0.34 -9.07 16 9 C 0.51 8.37 7.78 -11.58 -0.09 8.28 16 10 O -0.51 -8.72 13.10 5.50 0.07 -8.65 16 11 C 0.50 9.94 7.74 -11.59 -0.09 9.85 16 12 O -0.53 -11.81 15.95 5.49 0.09 -11.72 16 13 N -0.57 -11.83 2.97 -173.27 -0.51 -12.34 16 14 C 0.05 0.89 6.27 -3.71 -0.02 0.87 16 15 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 16 C -0.11 -2.34 5.11 -26.69 -0.14 -2.48 16 17 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 18 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.52 -14.03 8.57 -34.44 -0.30 -14.32 16 20 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 21 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 22 N -0.88 -25.43 11.38 55.43 0.63 -24.79 16 23 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.11 2.63 5.38 -3.71 -0.02 2.61 16 28 H 0.10 0.39 8.06 -52.49 -0.42 -0.03 16 29 H 0.10 0.44 7.84 -52.49 -0.41 0.03 16 30 H 0.11 0.47 8.06 -52.48 -0.42 0.05 16 31 H 0.08 0.45 7.79 -51.93 -0.40 0.04 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 36 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.41 4.70 7.96 -40.82 -0.33 4.37 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.14 2.46 3.78 -56.75 -0.21 2.25 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.12 3.43 5.17 -51.93 -0.27 3.16 16 LS Contribution 401.88 15.07 6.06 6.06 Total: -1.00 -30.71 401.88 -10.07 -40.79 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.93 Total: 4.87 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -0.78 Total: 3.02 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.22 Total: -46.20 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.16 Total: -20.37 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.34 Total: -4.27 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.71 -10.07 -40.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261721911.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.718 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds