Wall clock time and date at job start Sat Apr 11 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 120.00176 * 2 1 4 4 C 1.52998 * 109.47020 * 125.00034 * 3 2 1 5 5 S 1.81398 * 109.47051 * 179.97438 * 4 3 2 6 6 C 1.81395 * 103.00160 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47334 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47360 * 180.02562 * 7 6 5 9 9 C 1.34782 * 120.00166 * 180.02562 * 8 7 6 10 10 O 1.21350 * 119.99528 * 359.97438 * 9 8 7 11 11 C 1.49446 * 120.00084 * 179.97438 * 9 8 7 12 12 O 1.21356 * 119.99803 * 353.37756 * 11 9 8 13 13 N 1.34768 * 120.00057 * 173.37736 * 11 9 8 14 14 C 1.46923 * 120.63140 * 353.06161 * 13 11 9 15 15 C 1.53197 * 108.77603 * 126.41596 * 14 13 11 16 16 C 1.53036 * 109.34037 * 54.62030 * 15 14 13 17 17 C 1.53043 * 109.53781 * 298.68543 * 16 15 14 18 18 H 1.09000 * 109.49772 * 301.34791 * 17 16 15 19 19 C 1.50699 * 109.49861 * 181.28187 * 17 16 15 20 20 H 1.08009 * 119.99826 * 0.06421 * 19 17 16 21 21 C 1.37874 * 120.00391 * 180.34183 * 19 17 16 22 22 N 1.31511 * 119.99935 * 359.72505 * 21 19 17 23 23 Si 1.86803 * 120.00371 * 179.72468 * 21 19 17 24 24 H 1.48501 * 109.46987 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47049 * 119.99668 * 23 21 19 26 26 H 1.48495 * 109.47162 * 239.99991 * 23 21 19 27 27 C 1.46927 * 120.63303 * 173.08900 * 13 11 9 28 28 H 1.07997 * 119.99789 * 179.97438 * 1 2 3 29 29 H 1.07995 * 119.99464 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99677 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47105 * 4.99770 * 3 2 1 32 32 H 1.09004 * 109.47073 * 245.00146 * 3 2 1 33 33 H 1.09003 * 109.46879 * 60.00446 * 4 3 2 34 34 H 1.08990 * 109.47087 * 300.00030 * 4 3 2 35 35 H 1.09004 * 109.47117 * 60.00271 * 6 5 4 36 36 H 1.08999 * 109.47465 * 300.00374 * 6 5 4 37 37 H 1.09007 * 109.47352 * 60.00093 * 7 6 5 38 38 H 1.09010 * 109.47442 * 300.00179 * 7 6 5 39 39 H 0.96996 * 120.00059 * 359.97438 * 8 7 6 40 40 H 1.08998 * 109.59171 * 246.19792 * 14 13 11 41 41 H 1.09003 * 109.58922 * 6.48999 * 14 13 11 42 42 H 1.08995 * 109.50150 * 174.58993 * 15 14 13 43 43 H 1.09009 * 109.49617 * 294.68452 * 15 14 13 44 44 H 1.08997 * 109.49188 * 178.64856 * 16 15 14 45 45 H 1.09001 * 109.43006 * 58.68768 * 16 15 14 46 46 H 0.97000 * 120.00590 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.59192 * 113.79627 * 27 13 11 48 48 H 1.08998 * 109.70190 * 353.44355 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 16 3.9427 2.9036 1.1812 6 6 5.0241 2.7505 2.6295 7 6 5.8698 4.0176 2.7708 8 7 6.7436 3.8937 3.9402 9 6 7.5834 4.8971 4.2633 10 8 7.6160 5.9030 3.5853 11 6 8.4743 4.7709 5.4565 12 8 8.3582 3.8209 6.2027 13 7 9.4067 5.7121 5.7039 14 6 9.6629 6.7852 4.7336 15 6 9.5448 8.1350 5.4485 16 6 10.4771 8.1491 6.6620 17 6 10.0625 7.0463 7.6389 18 1 9.0295 7.2044 7.9488 19 6 10.9614 7.0813 8.8479 20 1 11.7492 7.8172 8.9140 21 6 10.7818 6.1704 9.8672 22 7 9.8225 5.2743 9.7867 23 14 11.9009 6.2088 11.3624 24 1 12.8928 7.3034 11.2102 25 1 11.0883 6.4427 12.5831 26 1 12.6117 4.9105 11.4821 27 6 10.1866 5.6843 6.9488 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6214 1.4026 -0.9314 33 1 3.7400 0.5065 1.0920 34 1 2.4773 1.2355 2.1129 35 1 5.6790 1.8882 2.5044 36 1 4.4162 2.6181 3.5245 37 1 5.2146 4.8797 2.8962 38 1 6.4778 4.1504 1.8758 39 1 6.7172 3.0898 4.4823 40 1 10.6671 6.6754 4.3240 41 1 8.9314 6.7312 3.9273 42 1 9.8264 8.9351 4.7641 43 1 8.5165 8.2830 5.7786 44 1 10.4129 9.1172 7.1588 45 1 11.5022 7.9768 6.3338 46 1 9.6959 4.6336 10.5039 47 1 11.2334 5.4847 6.7199 48 1 9.8014 4.9050 7.6064 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261721911.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:58 Heat of formation + Delta-G solvation = -66.653653 kcal Electronic energy + Delta-G solvation = -26560.691015 eV Core-core repulsion = 22741.758214 eV Total energy + Delta-G solvation = -3818.932801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.97923 -39.86679 -38.55139 -36.78844 -36.57907 -35.18369 -33.48035 -31.93282 -31.57297 -31.35591 -27.74857 -26.85959 -25.46469 -24.41136 -23.52528 -23.12599 -21.75567 -20.71707 -20.47211 -18.94471 -18.27596 -17.96893 -17.32143 -17.14185 -16.85253 -16.53167 -16.49231 -16.15479 -16.10357 -15.52641 -15.40150 -15.08648 -14.87854 -14.55503 -14.46357 -14.42611 -13.86098 -13.79238 -13.51907 -13.37972 -13.17902 -13.00330 -12.91736 -12.89791 -12.46492 -12.30660 -12.17268 -12.16832 -11.83927 -11.71483 -11.61843 -11.16198 -11.00415 -10.98637 -10.56100 -10.45090 -10.27513 -10.02385 -9.55934 -8.72212 -8.13005 -6.29254 0.31395 0.38019 1.32132 1.40261 1.42449 1.47740 1.54393 1.58936 2.12138 2.41150 2.60480 3.15506 3.29481 3.54546 3.82409 3.87392 4.02898 4.14377 4.15212 4.18793 4.32249 4.33974 4.39349 4.57031 4.57850 4.61912 4.66594 4.73586 4.80667 4.81698 4.82262 5.02616 5.05500 5.11030 5.14175 5.23668 5.25909 5.37912 5.50053 5.56584 5.74019 5.83167 5.85500 5.92407 5.94946 6.28899 6.42901 6.70179 6.82445 6.95633 7.40708 8.91407 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022243 B = 0.001792 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.493022 B =15620.912177 C =16624.391285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 C -0.076 4.076 4 C -0.072 4.072 5 S -0.272 6.272 6 C -0.095 4.095 7 C 0.137 3.863 8 N -0.684 5.684 9 C 0.523 3.477 10 O -0.517 6.517 11 C 0.487 3.513 12 O -0.558 6.558 13 N -0.574 5.574 14 C 0.049 3.951 15 C -0.121 4.121 16 C -0.107 4.107 17 C 0.037 3.963 18 H -0.011 1.011 19 C -0.534 4.534 20 H 0.063 0.937 21 C 0.011 3.989 22 N -0.916 5.916 23 Si 0.960 3.040 24 H -0.262 1.262 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.121 3.879 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.420 0.580 40 H 0.072 0.928 41 H 0.156 0.844 42 H 0.098 0.902 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.262 0.738 47 H 0.044 0.956 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.048 -8.623 -21.023 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.179 4.179 3 C -0.114 4.114 4 C -0.221 4.221 5 S -0.045 6.045 6 C -0.244 4.244 7 C 0.013 3.987 8 N -0.338 5.338 9 C 0.304 3.696 10 O -0.396 6.396 11 C 0.269 3.731 12 O -0.437 6.437 13 N -0.305 5.305 14 C -0.071 4.071 15 C -0.159 4.159 16 C -0.144 4.144 17 C 0.018 3.982 18 H 0.007 0.993 19 C -0.573 4.573 20 H 0.081 0.919 21 C -0.188 4.188 22 N -0.554 5.554 23 Si 0.785 3.215 24 H -0.186 1.186 25 H -0.208 1.208 26 H -0.207 1.207 27 C 0.000 4.000 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.258 0.742 40 H 0.090 0.910 41 H 0.172 0.828 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.227 -7.691 -21.730 27.088 hybrid contribution 0.658 -1.476 2.465 2.947 sum -13.570 -9.167 -19.265 25.285 Atomic orbital electron populations 1.24076 0.96029 1.02676 0.99973 1.22919 0.96117 0.97979 1.00857 1.20444 0.97314 0.96464 0.97181 1.23396 1.00254 0.95448 1.02954 1.87077 1.50161 1.28879 1.38432 1.23436 1.00366 1.00933 0.99633 1.21146 0.92185 0.97653 0.87674 1.45713 1.38368 1.19649 1.30053 1.19948 0.81384 0.83833 0.84417 1.90295 1.67326 1.29228 1.52747 1.20403 0.82442 0.83482 0.86741 1.90731 1.70637 1.32105 1.50249 1.48464 1.34989 1.26215 1.20839 1.23320 1.05017 0.85565 0.93217 1.21827 0.99295 0.97279 0.97494 1.21559 0.98785 0.98509 0.95572 1.18927 0.95047 0.91122 0.93074 0.99265 1.21517 1.16534 1.16048 1.03163 0.91923 1.25876 0.96629 0.94982 1.01316 1.70048 1.32548 1.18962 1.33881 0.85475 0.78885 0.78112 0.79010 1.18614 1.20827 1.20694 1.21955 0.92728 1.02648 0.82709 0.87355 0.88359 0.86258 0.90915 0.90025 0.88674 0.89353 0.87591 0.88112 0.90344 0.89685 0.74228 0.91000 0.82835 0.88360 0.93547 0.92812 0.92399 0.92927 0.93720 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 14.32 67.78 0.97 -0.63 16 2 C -0.16 -1.37 9.52 25.64 0.24 -1.12 16 3 C -0.08 -0.73 5.66 29.85 0.17 -0.56 16 4 C -0.07 -0.73 5.92 71.98 0.43 -0.30 16 5 S -0.27 -3.99 21.74 -56.49 -1.23 -5.22 16 6 C -0.10 -1.25 6.05 71.98 0.44 -0.82 16 7 C 0.14 2.49 5.68 86.38 0.49 2.98 16 8 N -0.68 -16.07 5.55 -464.39 -2.58 -18.65 16 9 C 0.52 16.59 7.78 87.27 0.68 17.26 16 10 O -0.52 -16.87 13.10 -3.25 -0.04 -16.91 16 11 C 0.49 19.76 7.74 87.27 0.68 20.43 16 12 O -0.56 -25.84 15.95 -3.27 -0.05 -25.89 16 13 N -0.57 -24.20 2.97 -820.48 -2.44 -26.64 16 14 C 0.05 1.68 6.27 86.36 0.54 2.22 16 15 C -0.12 -4.13 6.08 30.67 0.19 -3.95 16 16 C -0.11 -4.34 5.11 30.62 0.16 -4.18 16 17 C 0.04 1.92 2.25 -11.46 -0.03 1.90 16 18 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 19 C -0.53 -29.44 8.57 25.60 0.22 -29.22 16 20 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 21 C 0.01 0.63 5.30 84.65 0.45 1.08 16 22 N -0.92 -54.55 11.38 21.45 0.24 -54.30 16 23 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 27 C 0.12 6.08 5.38 86.36 0.46 6.55 16 28 H 0.11 0.69 8.06 -2.91 -0.02 0.67 16 29 H 0.10 0.80 7.84 -2.91 -0.02 0.77 16 30 H 0.12 0.81 8.06 -2.91 -0.02 0.78 16 31 H 0.07 0.77 7.79 -2.39 -0.02 0.76 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.85 8.14 -2.40 -0.02 0.83 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.42 9.04 7.96 -92.71 -0.74 8.30 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.16 5.04 3.78 -78.73 -0.30 4.74 16 42 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 47 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.09 4.99 5.17 -2.39 -0.01 4.98 16 Total: -1.00 -68.12 401.88 1.93 -66.18 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.08 Total: 23.91 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 6.08 Total: 11.65 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -4.77 Total: -99.59 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -0.09 Total: -42.80 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -3.99 SS G_CDS: -1.23 Total: -5.22 kcal Total: -68.12 1.93 -66.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261721911.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.470 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds