Wall clock time and date at job start Sat Apr 11 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47354 * 222.89661 * 3 2 1 5 5 O 1.42893 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.35713 * 117.00214 * 179.97438 * 5 4 3 7 7 C 1.38996 * 119.91227 * 180.02562 * 6 5 4 8 8 C 1.37705 * 120.08682 * 180.02562 * 7 6 5 9 9 C 1.39726 * 119.90967 * 359.97438 * 8 7 6 10 10 C 1.47610 * 120.08187 * 180.02562 * 9 8 7 11 11 O 1.21582 * 120.00666 * 6.03190 * 10 9 8 12 12 N 1.34783 * 119.99519 * 186.02910 * 10 9 8 13 13 C 1.47866 * 126.94600 * 354.13867 * 12 10 9 14 14 C 1.56020 * 105.10150 * 182.02284 * 13 12 10 15 15 H 1.09004 * 116.24539 * 159.68412 * 14 13 12 16 16 C 1.57079 * 100.42056 * 33.04763 * 14 13 12 17 17 C 1.52318 * 127.22974 * 174.73731 * 12 10 9 18 18 H 1.09007 * 116.78361 * 15.60478 * 17 12 10 19 19 C 1.56022 * 103.37166 * 246.61846 * 17 12 10 20 20 N 1.47877 * 105.09759 * 288.99967 * 19 17 12 21 21 C 1.36943 * 126.93866 * 182.00075 * 20 19 17 22 22 H 1.08001 * 119.99529 * 180.02562 * 21 20 19 23 23 C 1.38810 * 119.99998 * 0.02602 * 21 20 19 24 24 N 1.31617 * 120.00396 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99525 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47110 * 60.00434 * 25 23 21 27 27 H 1.48508 * 109.47023 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47216 * 299.99741 * 25 23 21 29 29 C 1.39728 * 119.82912 * 0.28091 * 9 8 7 30 30 C 1.37707 * 119.90897 * 359.46674 * 29 9 8 31 31 H 4.44651 * 5.63386 * 180.02562 * 4 1 2 32 32 H 1.08999 * 109.47378 * 102.89760 * 3 2 1 33 33 H 1.09001 * 109.47288 * 342.90115 * 3 2 1 34 34 H 1.09008 * 109.46767 * 59.99971 * 4 3 2 35 35 H 1.09001 * 109.47294 * 300.00451 * 4 3 2 36 36 H 1.08003 * 119.95519 * 0.02562 * 7 6 5 37 37 H 1.08003 * 120.04028 * 180.02562 * 8 7 6 38 38 H 1.08994 * 110.32021 * 63.11217 * 13 12 10 39 39 H 1.08999 * 110.39599 * 300.96521 * 13 12 10 40 40 H 1.09006 * 112.36555 * 64.06573 * 16 14 13 41 41 H 1.09001 * 112.37049 * 191.50748 * 16 14 13 42 42 H 1.08996 * 110.31618 * 170.09450 * 19 17 12 43 43 H 1.08991 * 110.31665 * 47.90414 * 19 17 12 44 44 H 0.96993 * 120.00059 * 180.02562 * 24 23 21 45 45 H 1.07994 * 120.04622 * 179.70288 * 29 9 8 46 46 H 1.08000 * 119.95680 * 180.25340 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 1.0576 0.9818 5 8 4.5845 1.0578 0.9823 6 6 5.2002 1.9443 1.8050 7 6 6.5884 1.9966 1.8531 8 6 7.2169 2.8943 2.6870 9 6 6.4572 3.7536 3.4851 10 6 7.1270 4.7177 4.3799 11 8 8.3359 4.8421 4.3440 12 7 6.3983 5.4602 5.2368 13 6 4.9237 5.5229 5.3264 14 6 4.6286 6.5698 6.4450 15 1 3.6336 7.0149 6.4383 16 6 5.8375 7.5519 6.2411 17 6 6.9201 6.4155 6.3023 18 1 7.9644 6.7176 6.2222 19 6 6.5013 5.7286 7.6391 20 7 5.0317 5.8785 7.7053 21 6 4.2071 5.4665 8.7181 22 1 3.1424 5.6340 8.6494 23 6 4.7398 4.8336 9.8327 24 7 6.0375 4.6300 9.9166 25 14 3.6151 4.2723 11.2145 26 1 2.6293 3.2961 10.6847 27 1 4.4242 3.6299 12.2813 28 1 2.8978 5.4449 11.7763 29 6 5.0620 3.6942 3.4378 30 6 4.4410 2.7973 2.5975 31 1 -1.0502 -0.0003 0.0000 32 1 3.0093 0.2302 -1.0017 33 1 3.0098 -0.9814 0.3022 34 1 2.7923 0.8280 1.9836 35 1 2.7917 2.0397 0.6797 36 1 7.1748 1.3323 1.2356 37 1 8.2955 2.9346 2.7234 38 1 4.5196 4.5493 5.6032 39 1 4.4992 5.8526 4.3782 40 1 5.8104 8.0471 5.2703 41 1 5.9364 8.2638 7.0605 42 1 6.9713 6.2294 8.4854 43 1 6.7737 4.6733 7.6239 44 1 6.4096 4.1874 10.6953 45 1 4.4715 4.3534 4.0567 46 1 3.3626 2.7536 2.5573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268944429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:08 Heat of formation + Delta-G solvation = 90.515517 kcal Electronic energy + Delta-G solvation = -28863.113752 eV Core-core repulsion = 24915.552366 eV Total energy + Delta-G solvation = -3947.561386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.60518 -39.83709 -38.19044 -36.94149 -34.91761 -33.73334 -32.07946 -31.02738 -30.81809 -29.79411 -28.80298 -28.50290 -25.42933 -24.89649 -24.15494 -22.55114 -22.28141 -20.52331 -19.87106 -19.11830 -18.68279 -17.85688 -17.46210 -16.58008 -16.53630 -16.24008 -15.53755 -15.09009 -14.70922 -14.60428 -14.24759 -14.14608 -13.98006 -13.90782 -13.42016 -13.33713 -13.22344 -12.90713 -12.33895 -12.28780 -12.05042 -11.81965 -11.71298 -11.34941 -11.15821 -11.05136 -11.02731 -10.87320 -10.72599 -10.61539 -10.52395 -10.51334 -10.18443 -10.07381 -9.67119 -9.49231 -9.08803 -8.72362 -8.34292 -8.00272 -6.95863 -5.79714 -3.14640 1.00335 1.32547 2.20239 2.41302 2.96147 3.11664 3.31159 3.35596 3.39638 3.42004 4.00354 4.06918 4.38946 4.50776 4.54061 4.71953 4.77818 4.81013 4.90159 5.07973 5.10190 5.20584 5.30039 5.35975 5.36062 5.42656 5.52123 5.54203 5.56707 5.62152 5.72903 5.79614 5.93596 6.02337 6.09670 6.23067 6.24436 6.34751 6.37776 6.49430 6.54066 6.59240 6.66356 7.16204 7.18616 7.38472 7.45759 7.68803 8.05500 8.08973 8.59538 9.06768 9.67845 10.36461 11.32300 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009974 B = 0.002949 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.752575 B = 9493.868211 C =11209.549212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.193 4.193 3 C -0.008 4.008 4 C 0.063 3.937 5 O -0.314 6.314 6 C 0.147 3.853 7 C -0.163 4.163 8 C -0.024 4.024 9 C -0.160 4.160 10 C 0.574 3.426 11 O -0.557 6.557 12 N -0.606 5.606 13 C 0.075 3.925 14 C 0.139 3.861 15 H 0.106 0.894 16 C -0.150 4.150 17 C 0.102 3.898 18 H 0.117 0.883 19 C 0.174 3.826 20 N -0.597 5.597 21 C -0.234 4.234 22 H 0.080 0.920 23 C -0.004 4.004 24 N -0.918 5.918 25 Si 0.913 3.087 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 C -0.076 4.076 30 C -0.218 4.218 31 H 0.220 0.780 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.255 0.745 45 H 0.165 0.835 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.765 -3.779 -19.045 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C -0.045 4.045 4 C -0.013 4.013 5 O -0.227 6.227 6 C 0.101 3.899 7 C -0.182 4.182 8 C -0.042 4.042 9 C -0.163 4.163 10 C 0.364 3.636 11 O -0.438 6.438 12 N -0.339 5.339 13 C -0.050 4.050 14 C 0.030 3.970 15 H 0.124 0.876 16 C -0.189 4.189 17 C 0.001 3.999 18 H 0.135 0.865 19 C 0.049 3.951 20 N -0.321 5.321 21 C -0.362 4.362 22 H 0.098 0.902 23 C -0.201 4.201 24 N -0.565 5.565 25 Si 0.743 3.257 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 C -0.094 4.094 30 C -0.236 4.236 31 H 0.237 0.763 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.182 0.818 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.972 -4.059 -18.958 20.287 hybrid contribution -1.025 -0.490 0.853 1.420 sum -6.997 -4.549 -18.106 19.936 Atomic orbital electron populations 1.24991 0.95979 0.99825 0.99934 1.22600 0.93963 1.01397 1.01339 1.18427 0.84883 1.00315 1.00861 1.22697 0.78629 0.99704 1.00239 1.85934 1.20852 1.55695 1.60233 1.19216 0.92303 0.88722 0.89618 1.20332 0.91070 1.02996 1.03772 1.21071 1.00616 0.91225 0.91334 1.19925 0.93761 1.00908 1.01745 1.17747 0.86212 0.80143 0.79464 1.90721 1.13769 1.69001 1.70314 1.49787 1.07365 1.42435 1.34309 1.23624 0.80532 1.01964 0.98892 1.23237 0.96657 0.90636 0.86510 0.87580 1.24111 0.97092 0.96659 1.01074 1.24937 0.97868 0.88966 0.88148 0.86493 1.21934 0.83958 0.98674 0.90581 1.45235 1.02794 1.67292 1.16773 1.18989 0.89577 1.32286 0.95370 0.90182 1.24822 0.96049 1.00803 0.98465 1.69897 1.09773 1.46927 1.29868 0.86198 0.79373 0.78428 0.81697 1.21158 1.21609 1.21091 1.22607 0.94511 0.96663 0.95572 1.21223 1.00127 1.00565 1.01722 0.76276 0.88361 0.88304 0.91189 0.91297 0.84715 0.84092 0.90175 0.92143 0.91526 0.89506 0.92451 0.93356 0.93470 0.81834 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.35 19.25 29.55 0.57 -0.79 16 2 C -0.19 -1.56 13.34 -37.12 -0.50 -2.05 16 3 C -0.01 -0.06 6.07 -29.52 -0.18 -0.24 16 4 C 0.06 0.52 4.69 37.16 0.17 0.70 16 5 O -0.31 -3.40 10.12 -18.85 -0.19 -3.59 16 6 C 0.15 1.82 6.70 -39.02 -0.26 1.56 16 7 C -0.16 -2.06 9.97 -39.50 -0.39 -2.45 16 8 C -0.02 -0.34 9.58 -39.22 -0.38 -0.72 16 9 C -0.16 -2.62 5.87 -104.96 -0.62 -3.24 16 10 C 0.57 11.10 7.87 -12.43 -0.10 11.00 16 11 O -0.56 -12.22 16.79 5.29 0.09 -12.13 16 12 N -0.61 -11.32 3.02 -156.81 -0.47 -11.79 16 13 C 0.07 1.24 4.25 -1.68 -0.01 1.23 16 14 C 0.14 2.47 5.46 -62.56 -0.34 2.13 16 15 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 16 C -0.15 -2.46 6.84 -22.30 -0.15 -2.61 16 17 C 0.10 1.95 5.40 -60.79 -0.33 1.63 16 18 H 0.12 2.18 8.12 -51.92 -0.42 1.75 16 19 C 0.17 4.10 4.76 -1.67 -0.01 4.09 16 20 N -0.60 -13.97 3.01 -156.34 -0.47 -14.44 16 21 C -0.23 -6.10 10.37 -15.06 -0.16 -6.25 16 22 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 23 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 24 N -0.92 -26.47 10.56 55.49 0.59 -25.88 16 25 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 C -0.08 -1.08 8.76 -39.22 -0.34 -1.42 16 30 C -0.22 -2.69 9.01 -39.49 -0.36 -3.05 16 31 H 0.22 0.84 7.80 -54.08 -0.42 0.41 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.59 7.65 -51.92 -0.40 0.19 16 35 H 0.07 0.53 7.65 -51.93 -0.40 0.14 16 36 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 37 H 0.14 1.99 7.66 -52.48 -0.40 1.59 16 38 H 0.08 1.44 6.86 -51.93 -0.36 1.09 16 39 H 0.06 0.81 6.88 -51.93 -0.36 0.45 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.06 1.49 7.46 -51.93 -0.39 1.10 16 43 H 0.05 1.33 7.68 -51.93 -0.40 0.93 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.16 2.23 2.79 -54.13 -0.15 2.08 16 46 H 0.13 1.31 6.28 -52.49 -0.33 0.98 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -32.69 379.80 -9.33 -42.02 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.10 Total: 4.38 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -3.47 Total: -0.70 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.36 Total: -52.11 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.10 Total: -15.71 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.69 -9.33 -42.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268944429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.532 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds