Wall clock time and date at job start Sat Apr 11 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47354 * 222.89661 * 3 2 1 5 5 O 1.42893 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.35713 * 117.00214 * 179.97438 * 5 4 3 7 7 C 1.38996 * 119.91227 * 180.02562 * 6 5 4 8 8 C 1.37705 * 120.08682 * 180.02562 * 7 6 5 9 9 C 1.39726 * 119.90967 * 359.97438 * 8 7 6 10 10 C 1.47610 * 120.08187 * 180.02562 * 9 8 7 11 11 O 1.21582 * 120.00666 * 6.03190 * 10 9 8 12 12 N 1.34783 * 119.99519 * 186.02910 * 10 9 8 13 13 C 1.47866 * 126.94600 * 354.13867 * 12 10 9 14 14 C 1.56020 * 105.10150 * 182.02284 * 13 12 10 15 15 H 1.09004 * 116.24539 * 159.68412 * 14 13 12 16 16 C 1.57079 * 100.42056 * 33.04763 * 14 13 12 17 17 C 1.52318 * 127.22974 * 174.73731 * 12 10 9 18 18 H 1.09007 * 116.78361 * 15.60478 * 17 12 10 19 19 C 1.56022 * 103.37166 * 246.61846 * 17 12 10 20 20 N 1.47877 * 105.09759 * 288.99967 * 19 17 12 21 21 C 1.36943 * 126.93866 * 182.00075 * 20 19 17 22 22 H 1.08001 * 119.99529 * 180.02562 * 21 20 19 23 23 C 1.38810 * 119.99998 * 0.02602 * 21 20 19 24 24 N 1.31617 * 120.00396 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99525 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47110 * 60.00434 * 25 23 21 27 27 H 1.48508 * 109.47023 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47216 * 299.99741 * 25 23 21 29 29 C 1.39728 * 119.82912 * 0.28091 * 9 8 7 30 30 C 1.37707 * 119.90897 * 359.46674 * 29 9 8 31 31 H 4.44651 * 5.63386 * 180.02562 * 4 1 2 32 32 H 1.08999 * 109.47378 * 102.89760 * 3 2 1 33 33 H 1.09001 * 109.47288 * 342.90115 * 3 2 1 34 34 H 1.09008 * 109.46767 * 59.99971 * 4 3 2 35 35 H 1.09001 * 109.47294 * 300.00451 * 4 3 2 36 36 H 1.08003 * 119.95519 * 0.02562 * 7 6 5 37 37 H 1.08003 * 120.04028 * 180.02562 * 8 7 6 38 38 H 1.08994 * 110.32021 * 63.11217 * 13 12 10 39 39 H 1.08999 * 110.39599 * 300.96521 * 13 12 10 40 40 H 1.09006 * 112.36555 * 64.06573 * 16 14 13 41 41 H 1.09001 * 112.37049 * 191.50748 * 16 14 13 42 42 H 1.08996 * 110.31618 * 170.09450 * 19 17 12 43 43 H 1.08991 * 110.31665 * 47.90414 * 19 17 12 44 44 H 0.96993 * 120.00059 * 180.02562 * 24 23 21 45 45 H 1.07994 * 120.04622 * 179.70288 * 29 9 8 46 46 H 1.08000 * 119.95680 * 180.25340 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 1.0576 0.9818 5 8 4.5845 1.0578 0.9823 6 6 5.2002 1.9443 1.8050 7 6 6.5884 1.9966 1.8531 8 6 7.2169 2.8943 2.6870 9 6 6.4572 3.7536 3.4851 10 6 7.1270 4.7177 4.3799 11 8 8.3359 4.8421 4.3440 12 7 6.3983 5.4602 5.2368 13 6 4.9237 5.5229 5.3264 14 6 4.6286 6.5698 6.4450 15 1 3.6336 7.0149 6.4383 16 6 5.8375 7.5519 6.2411 17 6 6.9201 6.4155 6.3023 18 1 7.9644 6.7176 6.2222 19 6 6.5013 5.7286 7.6391 20 7 5.0317 5.8785 7.7053 21 6 4.2071 5.4665 8.7181 22 1 3.1424 5.6340 8.6494 23 6 4.7398 4.8336 9.8327 24 7 6.0375 4.6300 9.9166 25 14 3.6151 4.2723 11.2145 26 1 2.6293 3.2961 10.6847 27 1 4.4242 3.6299 12.2813 28 1 2.8978 5.4449 11.7763 29 6 5.0620 3.6942 3.4378 30 6 4.4410 2.7973 2.5975 31 1 -1.0502 -0.0003 0.0000 32 1 3.0093 0.2302 -1.0017 33 1 3.0098 -0.9814 0.3022 34 1 2.7923 0.8280 1.9836 35 1 2.7917 2.0397 0.6797 36 1 7.1748 1.3323 1.2356 37 1 8.2955 2.9346 2.7234 38 1 4.5196 4.5493 5.6032 39 1 4.4992 5.8526 4.3782 40 1 5.8104 8.0471 5.2703 41 1 5.9364 8.2638 7.0605 42 1 6.9713 6.2294 8.4854 43 1 6.7737 4.6733 7.6239 44 1 6.4096 4.1874 10.6953 45 1 4.4715 4.3534 4.0567 46 1 3.3626 2.7536 2.5573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268944429.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:07 Heat of formation + Delta-G solvation = 71.961292 kcal Electronic energy + Delta-G solvation = -28863.918323 eV Core-core repulsion = 24915.552366 eV Total energy + Delta-G solvation = -3948.365958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.85309 -41.01109 -39.54500 -38.12898 -35.59764 -35.41309 -33.63577 -32.21153 -31.70243 -31.03048 -30.29952 -29.94850 -27.09022 -25.93270 -25.51202 -23.85564 -23.31641 -21.87221 -21.40478 -20.54113 -19.49283 -19.05088 -18.54745 -18.09879 -17.59508 -17.29214 -16.90682 -16.49780 -16.29761 -15.82495 -15.62974 -15.05129 -15.02918 -14.92785 -14.70696 -14.61166 -14.38528 -14.01247 -13.71333 -13.48072 -13.30525 -13.15907 -13.11667 -13.01243 -12.81433 -12.66326 -12.32510 -12.15524 -12.11575 -11.98852 -11.93916 -11.55131 -11.48203 -11.25673 -11.05137 -11.04102 -10.66578 -10.12928 -9.64890 -9.27374 -8.89353 -7.83496 -5.19220 -0.13098 0.29533 1.47597 1.50288 1.56371 1.58677 1.77894 1.88080 1.92674 2.23238 2.49335 2.81121 3.33132 3.36586 3.55545 3.58164 3.64970 3.78348 3.82039 3.88166 3.96552 4.01223 4.04119 4.18505 4.21368 4.30408 4.37649 4.47345 4.52241 4.61336 4.72570 4.82801 4.85262 4.88481 4.95896 5.01357 5.08539 5.12485 5.13262 5.19929 5.22576 5.34332 5.45324 5.52862 5.60140 5.66371 6.10269 6.27335 6.62736 6.65219 7.03322 7.12070 7.71915 8.42217 9.27642 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009974 B = 0.002949 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.752575 B = 9493.868211 C =11209.549212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.225 4.225 3 C -0.005 4.005 4 C 0.058 3.942 5 O -0.314 6.314 6 C 0.154 3.846 7 C -0.162 4.162 8 C -0.032 4.032 9 C -0.189 4.189 10 C 0.566 3.434 11 O -0.597 6.597 12 N -0.610 5.610 13 C 0.081 3.919 14 C 0.135 3.865 15 H 0.140 0.860 16 C -0.127 4.127 17 C 0.102 3.898 18 H 0.117 0.883 19 C 0.188 3.812 20 N -0.615 5.615 21 C -0.229 4.229 22 H 0.098 0.902 23 C -0.072 4.072 24 N -0.958 5.958 25 Si 0.977 3.023 26 H -0.276 1.276 27 H -0.305 1.305 28 H -0.273 1.273 29 C -0.075 4.075 30 C -0.214 4.214 31 H 0.246 0.754 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.157 0.843 37 H 0.135 0.865 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.021 0.979 43 H -0.005 1.005 44 H 0.243 0.757 45 H 0.171 0.829 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.109 -3.494 -21.536 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.225 4.225 3 C -0.041 4.041 4 C -0.017 4.017 5 O -0.227 6.227 6 C 0.107 3.893 7 C -0.180 4.180 8 C -0.051 4.051 9 C -0.192 4.192 10 C 0.359 3.641 11 O -0.480 6.480 12 N -0.342 5.342 13 C -0.042 4.042 14 C 0.028 3.972 15 H 0.157 0.843 16 C -0.166 4.166 17 C 0.000 4.000 18 H 0.135 0.865 19 C 0.062 3.938 20 N -0.340 5.340 21 C -0.358 4.358 22 H 0.116 0.884 23 C -0.264 4.264 24 N -0.607 5.607 25 Si 0.806 3.194 26 H -0.202 1.202 27 H -0.232 1.232 28 H -0.199 1.199 29 C -0.093 4.093 30 C -0.233 4.233 31 H 0.262 0.738 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.174 0.826 37 H 0.153 0.847 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.039 0.961 43 H 0.014 0.986 44 H 0.052 0.948 45 H 0.187 0.813 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.382 -3.751 -21.500 23.756 hybrid contribution -0.071 -0.651 1.505 1.641 sum -9.453 -4.402 -19.995 22.550 Atomic orbital electron populations 1.25774 0.96907 0.98718 0.98867 1.22979 0.94670 1.02467 1.02385 1.18405 0.84612 1.00106 1.00998 1.22900 0.77089 1.00828 1.00870 1.85947 1.22384 1.54923 1.59465 1.19325 0.92354 0.88412 0.89168 1.20517 0.91694 1.02535 1.03274 1.21102 1.00504 0.91686 0.91771 1.19828 0.94904 1.01664 1.02793 1.18313 0.85963 0.80184 0.79679 1.90681 1.15462 1.70142 1.71743 1.49851 1.08407 1.42247 1.33714 1.23618 0.79215 1.00903 1.00511 1.23682 0.98705 0.90812 0.83974 0.84261 1.24023 0.94229 0.95367 1.03003 1.24799 0.99042 0.90118 0.86000 0.86536 1.21500 0.84762 0.95540 0.92030 1.45482 1.02411 1.67710 1.18375 1.19512 0.90669 1.30199 0.95437 0.88416 1.25665 0.97193 1.02266 1.01306 1.70151 1.11716 1.48800 1.30021 0.85173 0.77493 0.78193 0.78591 1.20231 1.23211 1.19868 1.22623 0.93457 0.97284 0.95942 1.21472 1.01501 0.99569 1.00712 0.73784 0.87465 0.87894 0.91001 0.90252 0.82560 0.84683 0.91682 0.87488 0.87854 0.89604 0.96113 0.98642 0.94778 0.81259 0.82453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 19.25 74.32 1.43 -0.74 16 2 C -0.22 -3.13 13.34 31.12 0.42 -2.71 16 3 C 0.00 -0.06 6.07 28.79 0.17 0.12 16 4 C 0.06 0.80 4.69 71.98 0.34 1.14 16 5 O -0.31 -5.91 10.12 -90.35 -0.91 -6.83 16 6 C 0.15 3.43 6.70 22.63 0.15 3.58 16 7 C -0.16 -3.82 9.97 22.33 0.22 -3.60 16 8 C -0.03 -0.92 9.58 22.50 0.22 -0.70 16 9 C -0.19 -6.11 5.87 -20.08 -0.12 -6.23 16 10 C 0.57 22.27 7.87 86.72 0.68 22.95 16 11 O -0.60 -27.21 16.79 -3.98 -0.07 -27.28 16 12 N -0.61 -22.64 3.02 -768.29 -2.32 -24.96 16 13 C 0.08 2.50 4.25 87.16 0.37 2.87 16 14 C 0.13 4.44 5.46 46.93 0.26 4.70 16 15 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 16 C -0.13 -3.88 6.84 33.46 0.23 -3.65 16 17 C 0.10 3.97 5.40 46.32 0.25 4.22 16 18 H 0.12 4.50 8.12 -2.38 -0.02 4.48 16 19 C 0.19 9.33 4.76 87.16 0.41 9.75 16 20 N -0.62 -28.84 3.01 -648.54 -1.95 -30.80 16 21 C -0.23 -11.89 10.37 84.03 0.87 -11.01 16 22 H 0.10 4.61 7.83 -2.91 -0.02 4.59 16 23 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 24 N -0.96 -58.19 10.56 21.65 0.23 -57.96 16 25 Si 0.98 44.76 29.55 68.60 2.03 46.79 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 29 C -0.08 -2.00 8.76 22.50 0.20 -1.80 16 30 C -0.21 -4.68 9.01 22.33 0.20 -4.48 16 31 H 0.25 1.11 7.80 -4.41 -0.03 1.08 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 0.99 7.65 -2.38 -0.02 0.97 16 35 H 0.08 0.96 7.65 -2.39 -0.02 0.94 16 36 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.14 3.96 7.66 -2.91 -0.02 3.94 16 38 H 0.07 2.24 6.86 -2.39 -0.02 2.23 16 39 H 0.11 2.38 6.88 -2.39 -0.02 2.37 16 40 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 41 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.02 1.16 7.46 -2.39 -0.02 1.14 16 43 H 0.00 -0.28 7.68 -2.39 -0.02 -0.29 16 44 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.17 4.16 2.79 -4.46 -0.01 4.15 16 46 H 0.16 2.53 6.28 -2.91 -0.02 2.52 16 Total: -1.00 -75.54 379.80 4.76 -70.77 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.99 Total: 19.39 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 6.77 Total: 10.88 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -4.05 Total: -113.72 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.98 Total: -34.11 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -75.54 4.76 -70.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268944429.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.736 kcal (2) G-P(sol) polarization free energy of solvation -75.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds