Wall clock time and date at job start Sat Apr 11 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39898 * 109.46935 * 2 1 4 4 F 1.39898 * 109.47052 * 240.00032 * 2 1 3 5 5 C 1.52999 * 109.47482 * 120.00046 * 2 1 3 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 2 1 7 7 C 1.50701 * 109.47445 * 179.97438 * 6 5 2 8 8 O 1.21279 * 119.99791 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00218 * 180.02562 * 7 6 5 10 10 C 1.46507 * 120.00237 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46944 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.49704 * 304.93027 * 11 10 9 13 13 C 1.53185 * 109.49740 * 65.00132 * 11 10 9 14 14 N 1.46925 * 108.77643 * 174.58379 * 13 11 10 15 15 C 1.36932 * 120.63287 * 126.36919 * 14 13 11 16 16 H 1.07999 * 120.00262 * 331.83461 * 15 14 13 17 17 C 1.38821 * 120.00060 * 151.83553 * 15 14 13 18 18 N 1.31612 * 119.99909 * 343.07810 * 17 15 14 19 19 Si 1.86801 * 119.99965 * 163.07908 * 17 15 14 20 20 H 1.48503 * 109.46882 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46915 * 119.99822 * 19 17 15 22 22 H 1.48493 * 109.47228 * 239.99825 * 19 17 15 23 23 C 1.46929 * 118.73765 * 306.38947 * 14 13 11 24 24 C 1.53194 * 108.77538 * 53.60808 * 23 14 13 25 25 C 1.53040 * 109.31137 * 305.36505 * 24 23 14 26 26 F 1.39901 * 109.46327 * 301.34320 * 25 24 23 27 27 F 1.39901 * 109.45859 * 181.38314 * 25 24 23 28 28 H 1.08999 * 109.47140 * 299.99904 * 1 2 3 29 29 H 1.08994 * 109.47673 * 60.00080 * 1 2 3 30 30 H 1.09008 * 109.46954 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47127 * 59.99888 * 5 2 1 32 32 H 1.09008 * 109.47185 * 300.00121 * 5 2 1 33 33 H 1.09010 * 109.46885 * 60.00275 * 6 5 2 34 34 H 1.08997 * 109.47289 * 300.00566 * 6 5 2 35 35 H 0.97001 * 120.00068 * 359.97438 * 9 7 6 36 36 H 1.09000 * 109.46791 * 59.99649 * 10 9 7 37 37 H 1.08999 * 109.46918 * 299.99565 * 10 9 7 38 38 H 1.08999 * 109.58758 * 294.36655 * 13 11 10 39 39 H 1.09005 * 109.59148 * 54.79282 * 13 11 10 40 40 H 0.96999 * 120.00366 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.58836 * 173.39728 * 23 14 13 42 42 H 1.09005 * 109.59000 * 293.82196 * 23 14 13 43 43 H 1.08998 * 109.49630 * 65.31264 * 24 23 14 44 44 H 1.08999 * 109.49982 * 185.41143 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3190 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0401 -0.7212 1.2492 6 6 3.5700 -0.7218 1.2489 7 6 4.0724 -1.4317 2.4796 8 8 3.2844 -1.8922 3.2782 9 7 5.3975 -1.5547 2.6929 10 6 5.8859 -2.2453 3.8892 11 6 7.4159 -2.2457 3.8888 12 1 7.7793 -2.6812 2.9581 13 6 7.9276 -0.8073 4.0143 14 7 9.3909 -0.8354 4.1433 15 6 10.1799 -0.0989 3.3007 16 1 9.8362 0.1322 2.3033 17 6 11.4216 0.3508 3.7285 18 7 11.7079 0.3696 5.0129 19 14 12.6860 0.9294 2.4811 20 1 12.1218 0.8099 1.1126 21 1 13.0340 2.3477 2.7504 22 1 13.9070 0.0912 2.5887 23 6 9.9915 -1.6692 5.1934 24 6 9.4567 -3.0981 5.0547 25 6 7.9267 -3.0697 5.0729 26 9 7.4854 -2.4916 6.2680 27 9 7.4352 -4.3761 4.9781 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.6767 -1.7489 1.2492 32 1 1.6767 -0.2074 2.1393 33 1 3.9337 0.3058 1.2487 34 1 3.9330 -1.2358 0.3589 35 1 6.0278 -1.1866 2.0541 36 1 5.5226 -3.2729 3.8891 37 1 5.5226 -1.7314 4.7791 38 1 7.6501 -0.2417 3.1248 39 1 7.4918 -0.3401 4.8975 40 1 12.5754 0.6842 5.3120 41 1 11.0759 -1.6725 5.0819 42 1 9.7241 -1.2725 6.1728 43 1 9.8014 -3.5257 4.1133 44 1 9.8193 -3.7045 5.8847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271094205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:17 Heat of formation + Delta-G solvation = -237.096072 kcal Electronic energy + Delta-G solvation = -30618.228958 eV Core-core repulsion = 25683.835302 eV Total energy + Delta-G solvation = -4934.393656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.24140 -48.55597 -47.21233 -46.50706 -39.81698 -37.43916 -35.14436 -34.36584 -32.75098 -31.35752 -30.57642 -30.17816 -26.41127 -25.27493 -24.55201 -22.50604 -21.86620 -21.38456 -20.44107 -19.56732 -17.92408 -17.74631 -17.10798 -16.83437 -16.61103 -16.26744 -16.03706 -15.91969 -15.44997 -15.24513 -15.05116 -14.54924 -14.13036 -13.76666 -13.61797 -13.58889 -13.50109 -13.48068 -13.27979 -13.12304 -12.95328 -12.82260 -12.70820 -12.59224 -12.25338 -12.12935 -11.71729 -11.64835 -11.59977 -11.47770 -11.27000 -11.15497 -10.86670 -10.66112 -10.53655 -10.10884 -10.03166 -9.92799 -9.66856 -9.07055 -8.64748 -6.92869 -5.96751 -3.41827 2.57204 2.98863 3.27691 3.36290 3.37764 3.50563 3.82156 4.02562 4.10774 4.20326 4.34470 4.57050 4.62773 4.65107 4.74774 4.86256 4.87081 5.10646 5.16381 5.18082 5.24818 5.26171 5.38313 5.42707 5.51332 5.60043 5.61163 5.64585 5.88104 5.96915 6.12382 6.23746 6.29059 6.36533 6.40001 6.65616 7.07159 7.41698 7.43932 7.62897 8.14676 8.23760 8.99831 9.62219 10.17585 11.12413 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.002867 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.444067 B = 9762.636892 C =11650.023470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.285 3.715 3 F -0.200 7.200 4 F -0.202 7.202 5 C -0.143 4.143 6 C -0.148 4.148 7 C 0.517 3.483 8 O -0.545 6.545 9 N -0.721 5.721 10 C 0.125 3.875 11 C -0.155 4.155 12 H 0.102 0.898 13 C 0.153 3.847 14 N -0.590 5.590 15 C -0.262 4.262 16 H 0.070 0.930 17 C 0.007 3.993 18 N -0.899 5.899 19 Si 0.905 3.095 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.170 3.830 24 C -0.179 4.179 25 C 0.300 3.700 26 F -0.199 7.199 27 F -0.214 7.214 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.405 0.595 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.033 0.967 40 H 0.256 0.744 41 H 0.101 0.899 42 H 0.032 0.968 43 H 0.086 0.914 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.840 -3.774 -7.783 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.249 3.751 3 F -0.182 7.182 4 F -0.183 7.183 5 C -0.181 4.181 6 C -0.188 4.188 7 C 0.303 3.697 8 O -0.423 6.423 9 N -0.373 5.373 10 C 0.001 3.999 11 C -0.177 4.177 12 H 0.120 0.880 13 C 0.026 3.974 14 N -0.312 5.312 15 C -0.391 4.391 16 H 0.087 0.913 17 C -0.193 4.193 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.214 1.214 23 C 0.044 3.956 24 C -0.219 4.219 25 C 0.264 3.736 26 F -0.180 7.180 27 F -0.195 7.195 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.240 0.760 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.119 0.881 42 H 0.051 0.949 43 H 0.104 0.896 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.223 -4.024 -7.124 19.068 hybrid contribution 1.091 0.411 -0.837 1.435 sum -16.133 -3.613 -7.961 18.349 Atomic orbital electron populations 1.22757 0.91459 1.05555 1.05397 1.21189 0.93931 0.75793 0.84221 1.93022 1.90554 1.37712 1.96874 1.93012 1.90575 1.80948 1.53751 1.22377 0.95759 1.03520 0.96489 1.21642 0.96066 1.03280 0.97787 1.20417 0.82286 0.79690 0.87322 1.90705 1.55290 1.48996 1.47288 1.45960 1.07070 1.58652 1.25636 1.21331 0.92749 0.97772 0.88095 1.22975 0.94537 1.01767 0.98425 0.87992 1.20912 0.86560 0.89899 1.00055 1.44096 0.98944 1.50603 1.37553 1.19191 0.98492 1.28115 0.93317 0.91254 1.25101 0.99960 0.98539 0.95666 1.70021 1.22287 1.49355 1.12522 0.86193 0.81476 0.78080 0.80803 1.20125 1.21572 1.21416 1.20846 1.00091 0.83438 0.91242 1.23273 0.90204 1.04494 1.03897 1.21030 0.94763 0.75643 0.82207 1.92967 1.91228 1.84508 1.49312 1.92956 1.90029 1.40054 1.96427 0.89105 0.90040 0.89157 0.87975 0.87880 0.87801 0.87982 0.75967 0.91038 0.90645 0.91599 0.94955 0.93345 0.88133 0.94941 0.89569 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.08 9.38 37.16 0.35 -0.74 16 2 C 0.28 2.35 2.11 -26.73 -0.06 2.30 16 3 F -0.20 -2.02 16.54 2.25 0.04 -1.98 16 4 F -0.20 -1.98 16.54 2.25 0.04 -1.94 16 5 C -0.14 -1.22 4.09 -26.73 -0.11 -1.33 16 6 C -0.15 -1.38 5.46 -27.88 -0.15 -1.53 16 7 C 0.52 6.53 7.83 -10.99 -0.09 6.44 16 8 O -0.55 -8.73 15.98 5.56 0.09 -8.64 16 9 N -0.72 -8.95 5.33 -60.29 -0.32 -9.28 16 10 C 0.12 1.83 4.83 -4.04 -0.02 1.81 16 11 C -0.16 -2.48 2.03 -90.50 -0.18 -2.67 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 13 C 0.15 2.87 5.40 -3.71 -0.02 2.85 16 14 N -0.59 -13.49 2.99 -172.31 -0.52 -14.01 16 15 C -0.26 -6.58 9.58 -15.06 -0.14 -6.73 16 16 H 0.07 1.69 7.88 -52.49 -0.41 1.27 16 17 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 18 N -0.90 -24.63 11.20 55.49 0.62 -24.01 16 19 Si 0.91 20.38 29.59 -169.99 -5.03 15.35 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.17 3.78 5.10 -3.71 -0.02 3.76 16 24 C -0.18 -3.23 5.62 -26.61 -0.15 -3.38 16 25 C 0.30 5.24 1.63 -26.69 -0.04 5.20 16 26 F -0.20 -3.78 15.73 2.25 0.04 -3.74 16 27 F -0.21 -3.65 16.41 2.25 0.04 -3.61 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.10 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.10 0.88 8.10 -51.92 -0.42 0.46 16 33 H 0.10 0.90 7.80 -51.92 -0.41 0.49 16 34 H 0.10 0.83 7.80 -51.93 -0.41 0.43 16 35 H 0.41 4.29 7.70 -40.82 -0.31 3.97 16 36 H 0.07 1.09 7.63 -51.93 -0.40 0.69 16 37 H 0.08 1.21 7.97 -51.93 -0.41 0.80 16 38 H 0.07 1.14 7.13 -51.93 -0.37 0.77 16 39 H 0.03 0.66 7.92 -51.93 -0.41 0.24 16 40 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.10 2.48 6.06 -51.93 -0.31 2.16 16 42 H 0.03 0.78 7.92 -51.93 -0.41 0.37 16 43 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -30.14 368.79 -6.54 -36.68 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.37 Total: 3.54 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.72 Total: 6.08 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.22 Total: -47.30 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 9 Polarization: -11.42 SS G_CDS: 0.15 Total: -11.28 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.14 -6.54 -36.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271094205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.415 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds